Wall clock time and date at job start Sun Mar 7 2021 00:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47430 * 2 1 4 4 C 1.53008 * 109.47084 * 240.00015 * 2 1 3 5 5 Si 1.86301 * 109.46878 * 120.00400 * 2 1 3 6 6 C 1.86294 * 109.47237 * 299.99647 * 5 2 1 7 7 C 1.86306 * 109.46953 * 179.97438 * 5 2 1 8 8 O 1.63101 * 109.47192 * 60.00174 * 5 2 1 9 9 C 1.42907 * 113.99813 * 180.02562 * 8 5 2 10 10 C 1.52991 * 109.47051 * 179.97438 * 9 8 5 11 11 C 1.53494 * 114.20705 * 174.99834 * 10 9 8 12 12 N 1.47072 * 87.98804 * 139.65488 * 11 10 9 13 13 C 1.34773 * 136.05808 * 152.84158 * 12 11 10 14 14 O 1.21563 * 120.00449 * 2.86591 * 13 12 11 15 15 C 1.47731 * 119.99857 * 182.85725 * 13 12 11 16 16 C 1.39635 * 120.11777 * 352.38117 * 15 13 12 17 17 C 1.37856 * 119.87970 * 180.29829 * 16 15 13 18 18 C 1.38639 * 120.11531 * 359.72211 * 17 16 15 19 19 F 1.35097 * 119.87864 * 180.02562 * 18 17 16 20 20 C 1.38674 * 120.24035 * 359.97438 * 18 17 16 21 21 C 1.50700 * 119.94155 * 180.02562 * 20 18 17 22 22 O 1.42901 * 109.46706 * 74.98221 * 21 20 18 23 23 Si 1.86300 * 109.47317 * 314.98420 * 21 20 18 24 24 H 1.48507 * 109.47185 * 59.99738 * 23 21 20 25 25 H 1.48501 * 109.47419 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47003 * 300.00090 * 23 21 20 27 27 C 1.37816 * 120.11973 * 0.02874 * 20 18 17 28 28 C 1.47069 * 87.88148 * 333.10281 * 12 11 10 29 29 H 1.09004 * 109.47374 * 299.99699 * 1 2 3 30 30 H 1.09001 * 109.47184 * 59.99619 * 1 2 3 31 31 H 1.09003 * 109.47281 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47576 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47247 * 300.00342 * 3 2 1 34 34 H 1.09004 * 109.46596 * 59.99825 * 3 2 1 35 35 H 1.09003 * 109.47259 * 300.00255 * 4 2 1 36 36 H 1.09001 * 109.46811 * 60.00137 * 4 2 1 37 37 H 1.08996 * 109.46813 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.47100 * 180.02562 * 6 5 2 39 39 H 1.09003 * 109.47157 * 300.00287 * 6 5 2 40 40 H 1.09003 * 109.47192 * 60.00072 * 6 5 2 41 41 H 1.09001 * 109.46787 * 300.00167 * 7 5 2 42 42 H 1.09003 * 109.47082 * 59.99933 * 7 5 2 43 43 H 1.09001 * 109.47259 * 179.97438 * 7 5 2 44 44 H 1.08996 * 109.47224 * 59.99263 * 9 8 5 45 45 H 1.09002 * 109.46965 * 299.99699 * 9 8 5 46 46 H 1.09000 * 113.41414 * 41.79521 * 10 9 8 47 47 H 1.09000 * 113.46794 * 24.87464 * 11 10 9 48 48 H 1.08998 * 113.46916 * 254.43413 * 11 10 9 49 49 H 1.08001 * 120.06289 * 0.02562 * 16 15 13 50 50 H 1.07996 * 119.94264 * 179.70021 * 17 16 15 51 51 H 1.08999 * 109.47265 * 194.98308 * 21 20 18 52 52 H 0.96696 * 114.00306 * 299.99882 * 22 21 20 53 53 H 1.07995 * 120.06254 * 179.97438 * 27 20 18 54 54 H 1.08996 * 113.46586 * 141.68191 * 28 12 11 55 55 H 1.09001 * 113.46770 * 272.11903 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1509 -0.8784 1.5211 6 6 1.5300 -0.0002 3.0422 7 6 4.0140 -0.8790 1.5207 8 8 1.6073 -2.4161 1.5210 9 6 2.0284 -3.1816 2.6519 10 6 1.4627 -4.5992 2.5474 11 6 1.9479 -5.5531 3.6477 12 7 0.5809 -6.0921 3.7112 13 6 0.0158 -7.2663 4.0550 14 8 0.7073 -8.1746 4.4728 15 6 -1.4443 -7.4495 3.9244 16 6 -2.2603 -6.3643 3.5984 17 6 -3.6228 -6.5396 3.4838 18 6 -4.1826 -7.7917 3.6861 19 9 -5.5184 -7.9582 3.5721 20 6 -3.3761 -8.8741 4.0039 21 6 -3.9916 -10.2324 4.2218 22 8 -4.3618 -10.7952 2.9615 23 14 -5.5050 -10.0635 5.2950 24 1 -6.4896 -9.1753 4.6262 25 1 -6.1119 -11.4018 5.5092 26 1 -5.1203 -9.4785 6.6046 27 6 -2.0128 -8.7100 4.1210 28 6 0.1028 -4.7879 3.2281 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.6766 -1.7490 -1.2494 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2495 38 1 1.8937 -0.5139 3.9322 39 1 1.8934 1.0275 3.0423 40 1 0.4400 -0.0001 3.0423 41 1 4.3769 -1.3931 0.6307 42 1 4.3777 0.1485 1.5206 43 1 4.3773 -1.3925 2.4109 44 1 1.6637 -2.7114 3.5651 45 1 3.1173 -3.2254 2.6758 46 1 1.5162 -5.0138 1.5408 47 1 2.2559 -5.0425 4.5601 48 1 2.6844 -6.2776 3.3004 49 1 -1.8252 -5.3885 3.4405 50 1 -4.2554 -5.6999 3.2364 51 1 -3.2690 -10.8842 4.7126 52 1 -5.0039 -10.2667 2.4681 53 1 -1.3856 -9.5535 4.3689 54 1 -0.7264 -4.8630 2.5247 55 1 -0.0856 -4.0713 4.0276 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_12496548.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:09:32 Heat of formation + Delta-G solvation = -123.025542 kcal Electronic energy + Delta-G solvation = -33568.640887 eV Core-core repulsion = 29031.695541 eV Total energy + Delta-G solvation = -4536.945346 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 383.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.46247 -41.88899 -40.31975 -39.04420 -37.69775 -37.42254 -36.75795 -33.27809 -32.34700 -31.12868 -29.29862 -28.98134 -27.79142 -27.60228 -27.30189 -27.08428 -26.59963 -24.30929 -23.45379 -21.70080 -20.45743 -20.34494 -19.11721 -18.82359 -17.97188 -17.80672 -17.58622 -17.32402 -17.09003 -16.96383 -16.24120 -15.94107 -15.84094 -15.49988 -15.40018 -15.11089 -14.91003 -14.79169 -14.75795 -14.58307 -14.44465 -14.28885 -13.93365 -13.78219 -13.63675 -13.53280 -13.36847 -13.30826 -13.23180 -13.09097 -12.91732 -12.89003 -12.87309 -12.45153 -12.40399 -12.33167 -12.17008 -11.88723 -11.63701 -11.59548 -11.42175 -11.30052 -11.18511 -10.93878 -10.67324 -10.20994 -10.18299 -10.00055 -9.98353 -9.72679 -0.55268 -0.02556 1.06072 1.41101 1.43702 1.52111 1.54314 1.71827 1.87586 1.88914 2.21419 2.49545 2.55664 2.93695 3.19176 3.25176 3.35269 3.54503 3.57975 3.87476 3.95985 4.03709 4.07849 4.18774 4.18880 4.20964 4.36419 4.45724 4.48784 4.52123 4.57659 4.59880 4.63682 4.69475 4.74878 4.79780 4.81883 4.84234 4.86480 4.87793 4.88543 4.90108 4.91349 4.96801 5.06370 5.10420 5.15194 5.16123 5.24290 5.29281 5.41272 5.47974 5.50879 5.57575 5.62727 5.68455 5.73707 6.52071 6.54005 6.93387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.388 4.388 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.332 2.668 6 C -0.519 4.519 7 C -0.526 4.526 8 O -0.632 6.632 9 C 0.086 3.914 10 C -0.110 4.110 11 C 0.101 3.899 12 N -0.647 5.647 13 C 0.583 3.417 14 O -0.583 6.583 15 C -0.151 4.151 16 C -0.059 4.059 17 C -0.147 4.147 18 C 0.109 3.891 19 F -0.125 7.125 20 C -0.163 4.163 21 C -0.082 4.082 22 O -0.547 6.547 23 Si 0.969 3.031 24 H -0.229 1.229 25 H -0.271 1.271 26 H -0.264 1.264 27 C -0.025 4.025 28 C 0.087 3.913 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.112 0.888 47 H 0.110 0.890 48 H 0.074 0.926 49 H 0.178 0.822 50 H 0.176 0.824 51 H 0.129 0.871 52 H 0.387 0.613 53 H 0.139 0.861 54 H 0.105 0.895 55 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 7.993 -0.218 7.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.430 4.430 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.460 2.540 6 C -0.621 4.621 7 C -0.626 4.626 8 O -0.592 6.592 9 C 0.010 3.990 10 C -0.130 4.130 11 C -0.020 4.020 12 N -0.380 5.380 13 C 0.375 3.625 14 O -0.465 6.465 15 C -0.154 4.154 16 C -0.076 4.076 17 C -0.165 4.165 18 C 0.089 3.911 19 F -0.104 7.104 20 C -0.164 4.164 21 C -0.191 4.191 22 O -0.353 6.353 23 Si 0.791 3.209 24 H -0.151 1.151 25 H -0.196 1.196 26 H -0.188 1.188 27 C -0.044 4.044 28 C -0.034 4.034 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.130 0.870 47 H 0.128 0.872 48 H 0.092 0.908 49 H 0.195 0.805 50 H 0.193 0.807 51 H 0.146 0.854 52 H 0.236 0.764 53 H 0.157 0.843 54 H 0.123 0.877 55 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.314 6.757 0.596 6.791 hybrid contribution 0.261 0.495 -0.475 0.734 sum -0.054 7.253 0.121 7.254 Atomic orbital electron populations 1.21541 0.94049 1.02058 1.01696 1.26034 1.00611 1.02789 1.13548 1.21609 1.01124 0.95108 1.02076 1.21546 1.00842 1.00191 0.96881 0.75896 0.61750 0.52759 0.63591 1.27105 1.07174 1.09624 1.18150 1.27214 1.26185 1.04706 1.04524 1.85347 1.79428 1.46256 1.48155 1.22109 0.99455 0.89787 0.87605 1.22899 0.95608 0.94934 0.99514 1.23246 0.84798 0.94593 0.99411 1.49463 1.12182 1.11281 1.65109 1.17902 0.87357 0.80872 0.76409 1.90789 1.64899 1.42427 1.48375 1.19943 0.92502 0.95573 1.07421 1.22114 0.92493 0.99892 0.93148 1.21478 0.96162 0.96424 1.02435 1.18105 0.77332 0.95006 1.00635 1.91581 1.29947 1.95807 1.93062 1.20304 0.94191 0.96314 1.05577 1.25033 1.08606 0.92513 0.92970 1.86533 1.65932 1.51112 1.31767 0.85698 0.77519 0.80091 0.77596 1.15134 1.19590 1.18806 1.21034 0.93063 0.97031 0.93315 1.23750 0.99020 0.81905 0.98742 0.91889 0.93919 0.91919 0.92107 0.93530 0.91721 0.92164 0.93807 0.92418 0.90586 0.90915 0.90676 0.91467 0.90914 0.90794 0.89733 0.90584 0.87029 0.87176 0.90771 0.80481 0.80681 0.85361 0.76438 0.84327 0.87736 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.47 7.85 71.98 0.56 1.03 16 2 C -0.39 1.49 0.53 -10.79 -0.01 1.49 16 3 C -0.14 0.50 7.85 71.98 0.56 1.06 16 4 C -0.14 0.29 7.85 71.98 0.56 0.85 16 5 Si 1.33 -9.88 8.45 68.60 0.58 -9.30 16 6 C -0.52 3.84 8.50 113.37 0.96 4.80 16 7 C -0.53 2.83 8.50 113.37 0.96 3.80 16 8 O -0.63 4.39 8.56 -148.98 -1.28 3.11 16 9 C 0.09 -0.88 5.04 71.98 0.36 -0.52 16 10 C -0.11 0.93 4.34 -10.55 -0.05 0.89 16 11 C 0.10 -0.50 8.20 83.18 0.68 0.18 16 12 N -0.65 0.51 3.69 -862.38 -3.18 -2.67 16 13 C 0.58 3.92 8.00 86.75 0.69 4.61 16 14 O -0.58 -9.16 17.15 -3.91 -0.07 -9.23 16 15 C -0.15 -0.44 5.87 -20.09 -0.12 -0.56 16 16 C -0.06 0.22 9.18 22.52 0.21 0.43 16 17 C -0.15 0.60 10.01 22.28 0.22 0.83 16 18 C 0.11 0.01 6.62 22.47 0.15 0.16 16 19 F -0.13 -0.07 12.58 44.97 0.57 0.49 16 20 C -0.16 -0.36 4.78 -19.86 -0.09 -0.46 16 21 C -0.08 -0.14 2.80 71.24 0.20 0.06 16 22 O -0.55 -1.73 12.88 -148.98 -1.92 -3.65 16 23 Si 0.97 1.58 26.09 68.60 1.79 3.37 16 24 H -0.23 -0.33 5.29 99.48 0.53 0.20 16 25 H -0.27 -1.23 7.11 99.48 0.71 -0.53 16 26 H -0.26 -0.93 7.11 99.48 0.71 -0.23 16 27 C -0.03 -0.11 9.20 22.52 0.21 0.10 16 28 C 0.09 -0.80 6.05 83.09 0.50 -0.30 16 29 H 0.06 -0.33 7.79 -2.38 -0.02 -0.35 16 30 H 0.04 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.06 -0.25 7.97 -2.39 -0.02 -0.27 16 32 H 0.06 -0.27 7.79 -2.39 -0.02 -0.29 16 33 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.06 -0.34 7.79 -2.38 -0.02 -0.36 16 35 H 0.06 -0.13 7.97 -2.39 -0.02 -0.15 16 36 H 0.04 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 38 H 0.08 -0.68 7.48 -2.39 -0.02 -0.70 16 39 H 0.07 -0.48 7.79 -2.39 -0.02 -0.49 16 40 H 0.07 -0.55 7.79 -2.39 -0.02 -0.57 16 41 H 0.07 -0.27 7.79 -2.39 -0.02 -0.29 16 42 H 0.07 -0.36 7.79 -2.39 -0.02 -0.38 16 43 H 0.07 -0.50 7.48 -2.39 -0.02 -0.52 16 44 H 0.08 -1.22 6.88 -2.39 -0.02 -1.24 16 45 H 0.08 -0.92 7.21 -2.39 -0.02 -0.93 16 46 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 47 H 0.11 -0.98 8.10 -2.39 -0.02 -0.99 16 48 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 49 H 0.18 -1.75 3.86 -2.91 -0.01 -1.76 16 50 H 0.18 -1.73 8.06 -2.91 -0.02 -1.75 16 51 H 0.13 0.02 7.77 -2.39 -0.02 0.00 16 52 H 0.39 -1.11 8.41 -74.06 -0.62 -1.73 16 53 H 0.14 0.81 7.61 -2.91 -0.02 0.79 16 54 H 0.10 -1.20 6.16 -2.39 -0.01 -1.21 16 55 H 0.12 -1.71 7.88 -2.39 -0.02 -1.73 16 Total: 0.00 -20.13 435.92 3.92 -16.22 By element: Atomic # 1 Polarization: -17.63 SS G_CDS: 0.84 Total: -16.80 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 6.58 Total: 18.45 kcal Atomic # 7 Polarization: 0.51 SS G_CDS: -3.18 Total: -2.67 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -3.26 Total: -9.77 kcal Atomic # 9 Polarization: -0.07 SS G_CDS: 0.57 Total: 0.49 kcal Atomic # 14 Polarization: -8.30 SS G_CDS: 2.37 Total: -5.93 kcal Total: -20.13 3.92 -16.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_12496548.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.808 kcal (2) G-P(sol) polarization free energy of solvation -20.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds