Wall clock time and date at job start Sun Mar 7 2021 00:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 C 1.52997 * 109.47230 * 239.99845 * 2 1 3 5 5 Si 1.86298 * 109.47092 * 119.99718 * 2 1 3 6 6 C 1.86302 * 109.47471 * 299.99970 * 5 2 1 7 7 C 1.86305 * 109.47104 * 180.02562 * 5 2 1 8 8 O 1.63097 * 109.47068 * 60.00180 * 5 2 1 9 9 C 1.42907 * 113.99995 * 179.97438 * 8 5 2 10 10 C 1.52999 * 109.47008 * 180.02562 * 9 8 5 11 11 C 1.53500 * 114.20635 * 185.00208 * 10 9 8 12 12 N 1.47060 * 87.98365 * 220.34251 * 11 10 9 13 13 C 1.34780 * 136.05804 * 207.07918 * 12 11 10 14 14 O 1.21519 * 119.99818 * 0.02562 * 13 12 11 15 15 C 1.48165 * 120.00195 * 179.97438 * 13 12 11 16 16 C 1.39272 * 119.72299 * 180.02562 * 15 13 12 17 17 C 1.38628 * 119.05967 * 180.02562 * 16 15 13 18 18 C 1.38583 * 118.49218 * 359.72649 * 17 16 15 19 19 C 1.50696 * 120.32810 * 180.27002 * 18 17 16 20 20 O 1.42900 * 109.47295 * 65.24789 * 19 18 17 21 21 Si 1.86299 * 109.47338 * 185.25213 * 19 18 17 22 22 H 1.48494 * 109.47392 * 179.97438 * 21 19 18 23 23 H 1.48499 * 109.46951 * 299.99954 * 21 19 18 24 24 H 1.48502 * 109.47165 * 59.99642 * 21 19 18 25 25 C 1.38603 * 119.34786 * 0.51982 * 18 17 16 26 26 N 1.31498 * 120.90149 * 359.46849 * 25 18 17 27 27 C 1.47061 * 87.88829 * 27.34253 * 12 11 10 28 28 H 1.09005 * 109.47112 * 300.00269 * 1 2 3 29 29 H 1.08992 * 109.47197 * 60.00152 * 1 2 3 30 30 H 1.08997 * 109.47322 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47078 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46869 * 300.00049 * 3 2 1 33 33 H 1.09005 * 109.47353 * 59.99879 * 3 2 1 34 34 H 1.08997 * 109.46804 * 300.00116 * 4 2 1 35 35 H 1.09006 * 109.47029 * 59.99778 * 4 2 1 36 36 H 1.08999 * 109.47255 * 180.02562 * 4 2 1 37 37 H 1.08992 * 109.47313 * 180.02562 * 6 5 2 38 38 H 1.09002 * 109.47223 * 300.00579 * 6 5 2 39 39 H 1.08999 * 109.46963 * 59.99914 * 6 5 2 40 40 H 1.08997 * 109.47160 * 300.00284 * 7 5 2 41 41 H 1.09002 * 109.46675 * 59.99982 * 7 5 2 42 42 H 1.09000 * 109.46891 * 180.02562 * 7 5 2 43 43 H 1.09001 * 109.46585 * 60.00096 * 9 8 5 44 44 H 1.08994 * 109.46887 * 299.99733 * 9 8 5 45 45 H 1.09006 * 113.28054 * 318.06365 * 10 9 8 46 46 H 1.09003 * 113.46882 * 105.55916 * 11 10 9 47 47 H 1.09000 * 113.46455 * 335.12578 * 11 10 9 48 48 H 1.08003 * 120.46998 * 0.02745 * 16 15 13 49 49 H 1.08004 * 120.75079 * 180.02562 * 17 16 15 50 50 H 1.09004 * 109.47174 * 305.24938 * 19 18 17 51 51 H 0.96701 * 113.99760 * 179.97438 * 20 19 18 52 52 H 1.08002 * 119.55225 * 179.75221 * 25 18 17 53 53 H 1.09003 * 113.47331 * 87.43609 * 27 12 11 54 54 H 1.09007 * 113.46877 * 217.88038 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8781 1.5212 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8775 1.5216 8 8 1.6073 -2.4158 1.5212 9 6 2.0295 -3.1816 2.6516 10 6 1.4646 -4.5996 2.5466 11 6 1.7516 -5.4834 3.7684 12 7 2.0051 -6.5951 2.8397 13 6 1.9219 -7.9394 2.8895 14 8 1.5553 -8.4881 3.9099 15 6 2.2765 -8.7482 1.6998 16 6 2.1880 -10.1369 1.7575 17 6 2.5236 -10.8802 0.6365 18 6 2.9306 -10.2079 -0.5049 19 6 3.2992 -10.9745 -1.7489 20 8 2.1430 -11.6437 -2.2562 21 14 3.9485 -9.7945 -3.0360 22 1 4.3123 -10.5500 -4.2616 23 1 2.9013 -8.7938 -3.3634 24 1 5.1501 -9.0991 -2.5088 25 6 3.0002 -8.8237 -0.4896 26 7 2.6760 -8.1431 0.5879 27 6 2.3956 -5.5949 1.8348 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2491 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.8937 -0.5134 3.9323 38 1 1.8933 1.0278 3.0423 39 1 0.4400 0.0001 3.0423 40 1 4.3777 -1.3910 0.6316 41 1 4.3769 0.1504 1.5217 42 1 4.3773 -1.3917 2.4114 43 1 1.6653 -2.7116 3.5651 44 1 3.1183 -3.2254 2.6745 45 1 0.4286 -4.6268 2.2089 46 1 0.8809 -5.6396 4.4053 47 1 2.6345 -5.1759 4.3288 48 1 1.8624 -10.6278 2.6628 49 1 2.4645 -11.9585 0.6509 50 1 4.0679 -11.7090 -1.5086 51 1 2.3066 -12.1579 -3.0586 52 1 3.3208 -8.2966 -1.3760 53 1 3.4484 -5.3168 1.8854 54 1 2.0735 -5.8462 0.8242 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_13287726.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:14:26 Heat of formation + Delta-G solvation = -81.451937 kcal Electronic energy + Delta-G solvation = -31136.146901 eV Core-core repulsion = 27005.032386 eV Total energy + Delta-G solvation = -4131.114515 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.02754 -41.00688 -39.23462 -37.79583 -37.43388 -36.78178 -34.07410 -33.07083 -31.65794 -29.33593 -29.00542 -28.17892 -27.79817 -27.33066 -26.95634 -26.38639 -25.03859 -23.44983 -21.92240 -20.63745 -20.37308 -18.73358 -18.59720 -18.27848 -17.63962 -17.16732 -17.03135 -16.82396 -16.20431 -16.02192 -15.88047 -15.69391 -15.49225 -14.84125 -14.81471 -14.74580 -14.52124 -14.43217 -14.30364 -14.14093 -13.90478 -13.81729 -13.59375 -13.48312 -13.33974 -13.27061 -13.10692 -12.91180 -12.89111 -12.51251 -12.43809 -12.35654 -12.10051 -12.05396 -11.93670 -11.67562 -11.63784 -11.54999 -11.28580 -11.16469 -11.05486 -10.64606 -10.48283 -10.22937 -10.20310 -10.00665 -9.80225 -0.62451 0.05406 1.12133 1.45094 1.46708 1.50735 1.54664 1.70402 1.85605 1.91903 2.19467 2.52912 2.59833 2.81146 3.25848 3.32309 3.47741 3.65078 3.79937 3.90435 3.95344 3.98890 4.14317 4.16576 4.16749 4.34199 4.37320 4.40210 4.49742 4.52443 4.55056 4.56628 4.63381 4.72681 4.80503 4.81690 4.84041 4.85811 4.86178 4.86915 4.88405 4.97335 5.00225 5.04152 5.12966 5.13387 5.22719 5.27233 5.36542 5.38689 5.45344 5.48915 5.60738 5.66611 5.70884 6.43236 6.48684 6.79183 6.91415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.386 4.386 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.323 2.677 6 C -0.520 4.520 7 C -0.518 4.518 8 O -0.636 6.636 9 C 0.089 3.911 10 C -0.114 4.114 11 C 0.104 3.896 12 N -0.635 5.635 13 C 0.591 3.409 14 O -0.573 6.573 15 C 0.063 3.937 16 C -0.115 4.115 17 C -0.049 4.049 18 C -0.106 4.106 19 C -0.078 4.078 20 O -0.561 6.561 21 Si 0.966 3.034 22 H -0.248 1.248 23 H -0.265 1.265 24 H -0.252 1.252 25 C 0.086 3.914 26 N -0.455 5.455 27 C 0.114 3.886 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.112 0.888 48 H 0.152 0.848 49 H 0.170 0.830 50 H 0.110 0.890 51 H 0.403 0.597 52 H 0.172 0.828 53 H 0.104 0.896 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 0.518 -3.394 5.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.428 4.428 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.452 2.548 6 C -0.622 4.622 7 C -0.620 4.620 8 O -0.596 6.596 9 C 0.014 3.986 10 C -0.133 4.133 11 C -0.018 4.018 12 N -0.367 5.367 13 C 0.380 3.620 14 O -0.453 6.453 15 C -0.074 4.074 16 C -0.136 4.136 17 C -0.074 4.074 18 C -0.108 4.108 19 C -0.189 4.189 20 O -0.371 6.371 21 Si 0.790 3.210 22 H -0.171 1.171 23 H -0.190 1.190 24 H -0.176 1.176 25 C -0.074 4.074 26 N -0.166 5.166 27 C -0.007 4.007 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.127 0.873 46 H 0.099 0.901 47 H 0.130 0.870 48 H 0.169 0.831 49 H 0.188 0.812 50 H 0.128 0.872 51 H 0.254 0.746 52 H 0.188 0.812 53 H 0.122 0.878 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.984 1.602 -3.082 5.285 hybrid contribution 0.010 -0.972 -0.083 0.975 sum 3.994 0.631 -3.164 5.134 Atomic orbital electron populations 1.21539 0.94467 1.01749 1.01663 1.25987 1.00245 1.02996 1.13560 1.21605 1.01296 0.94848 1.02055 1.21538 1.01057 1.00057 0.96727 0.76059 0.62487 0.52660 0.63582 1.27136 1.06807 1.09802 1.18441 1.27099 1.25171 1.04941 1.04766 1.85347 1.79587 1.46443 1.48174 1.22083 0.99162 0.89766 0.87625 1.23042 1.01387 0.92880 0.96037 1.23279 1.02894 0.81592 0.94024 1.49441 1.64300 1.03118 1.19865 1.17609 0.77519 0.80565 0.86296 1.90778 1.50091 1.71354 1.33030 1.21014 1.01292 0.92335 0.92783 1.22310 0.97305 0.93164 1.00788 1.21778 0.92995 1.02383 0.90290 1.20870 0.98824 0.94587 0.96493 1.24689 0.92875 1.03006 0.98310 1.86455 1.33015 1.68949 1.48662 0.85432 0.79229 0.78519 0.77862 1.17134 1.19004 1.17561 1.22977 0.96686 0.91300 0.96452 1.67614 1.09320 1.40662 0.99046 1.23406 1.00101 0.82752 0.94481 0.92178 0.93633 0.92471 0.91754 0.93396 0.91893 0.92392 0.93669 0.91987 0.90718 0.90659 0.91326 0.91050 0.90644 0.90687 0.90117 0.90172 0.87316 0.90126 0.86968 0.83052 0.81204 0.87238 0.74553 0.81152 0.87829 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.01 7.85 71.98 0.56 0.55 16 2 C -0.39 0.53 0.53 -10.79 -0.01 0.52 16 3 C -0.14 0.26 7.85 71.98 0.56 0.82 16 4 C -0.14 0.05 7.85 71.98 0.56 0.61 16 5 Si 1.32 -5.76 8.45 68.60 0.58 -5.18 16 6 C -0.52 1.86 8.50 113.37 0.96 2.82 16 7 C -0.52 2.19 8.50 113.37 0.96 3.15 16 8 O -0.64 1.52 8.56 -148.98 -1.28 0.24 16 9 C 0.09 -0.50 5.04 71.98 0.36 -0.13 16 10 C -0.11 0.29 4.38 -10.37 -0.05 0.24 16 11 C 0.10 -0.06 8.19 83.18 0.68 0.62 16 12 N -0.64 -3.65 3.69 -860.89 -3.17 -6.82 16 13 C 0.59 6.87 8.06 86.88 0.70 7.57 16 14 O -0.57 -10.17 17.10 -3.77 -0.06 -10.23 16 15 C 0.06 0.55 6.75 41.89 0.28 0.83 16 16 C -0.11 -0.63 9.63 22.61 0.22 -0.41 16 17 C -0.05 -0.05 9.84 22.45 0.22 0.17 16 18 C -0.11 -0.06 5.40 -19.70 -0.11 -0.17 16 19 C -0.08 0.39 2.81 71.23 0.20 0.59 16 20 O -0.56 2.11 12.82 -148.98 -1.91 0.20 16 21 Si 0.97 -4.67 25.16 68.60 1.73 -2.94 16 22 H -0.25 1.26 7.11 99.48 0.71 1.97 16 23 H -0.27 0.29 7.04 99.48 0.70 0.99 16 24 H -0.25 0.93 7.11 99.48 0.71 1.63 16 25 C 0.09 0.24 9.84 84.83 0.83 1.08 16 26 N -0.46 -2.96 8.01 -184.91 -1.48 -4.45 16 27 C 0.11 0.02 7.08 83.26 0.59 0.61 16 28 H 0.06 -0.08 7.79 -2.38 -0.02 -0.09 16 29 H 0.04 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 31 H 0.06 -0.23 7.79 -2.39 -0.02 -0.24 16 32 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 33 H 0.06 -0.20 7.79 -2.38 -0.02 -0.22 16 34 H 0.06 0.01 7.96 -2.39 -0.02 -0.01 16 35 H 0.04 0.05 8.14 -2.38 -0.02 0.03 16 36 H 0.06 -0.13 7.79 -2.39 -0.02 -0.14 16 37 H 0.07 -0.37 7.48 -2.39 -0.02 -0.39 16 38 H 0.07 -0.28 7.79 -2.39 -0.02 -0.29 16 39 H 0.07 -0.17 7.79 -2.39 -0.02 -0.18 16 40 H 0.07 -0.25 7.79 -2.39 -0.02 -0.27 16 41 H 0.07 -0.32 7.79 -2.39 -0.02 -0.34 16 42 H 0.07 -0.42 7.48 -2.39 -0.02 -0.44 16 43 H 0.08 -0.71 7.21 -2.39 -0.02 -0.72 16 44 H 0.08 -0.74 6.87 -2.39 -0.02 -0.75 16 45 H 0.11 -0.06 8.14 -2.38 -0.02 -0.08 16 46 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 47 H 0.11 -0.57 8.10 -2.39 -0.02 -0.59 16 48 H 0.15 0.75 7.64 -2.91 -0.02 0.73 16 49 H 0.17 -0.68 8.06 -2.91 -0.02 -0.71 16 50 H 0.11 -1.10 7.96 -2.39 -0.02 -1.12 16 51 H 0.40 -5.14 8.74 -74.06 -0.65 -5.79 16 52 H 0.17 -0.19 4.88 -2.91 -0.01 -0.20 16 53 H 0.10 -0.34 7.87 -2.39 -0.02 -0.36 16 54 H 0.09 0.20 7.14 -2.38 -0.02 0.18 16 Total: 0.00 -20.01 431.53 2.93 -17.08 By element: Atomic # 1 Polarization: -8.35 SS G_CDS: 0.98 Total: -7.37 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 7.55 Total: 19.47 kcal Atomic # 7 Polarization: -6.61 SS G_CDS: -4.66 Total: -11.27 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -3.25 Total: -9.79 kcal Atomic # 14 Polarization: -10.43 SS G_CDS: 2.31 Total: -8.12 kcal Total: -20.01 2.93 -17.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_13287726.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.375 kcal (2) G-P(sol) polarization free energy of solvation -20.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds