Wall clock time and date at job start Sun Mar 7 2021 00:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34656 * 124.85181 * 2 1 4 4 C 1.36761 * 108.39879 * 179.97438 * 3 2 1 5 5 C 1.47264 * 126.94290 * 179.97438 * 4 3 2 6 6 O 1.21635 * 119.99710 * 180.02562 * 5 4 3 7 7 N 1.34772 * 119.99895 * 0.02562 * 5 4 3 8 8 C 1.47066 * 136.05397 * 180.02562 * 7 5 4 9 9 C 1.53503 * 87.98596 * 152.84244 * 8 7 5 10 10 C 1.53001 * 114.20744 * 139.64985 * 9 8 7 11 11 O 1.42895 * 109.46969 * 174.99896 * 10 9 8 12 12 Si 1.63095 * 113.99997 * 180.02562 * 11 10 9 13 13 C 1.86298 * 109.47333 * 300.00603 * 12 11 10 14 14 C 1.86301 * 109.47043 * 60.00607 * 12 11 10 15 15 C 1.86307 * 109.47343 * 180.02562 * 12 11 10 16 16 C 1.52994 * 109.47038 * 60.00117 * 15 12 11 17 17 C 1.52995 * 109.47133 * 180.02562 * 15 12 11 18 18 C 1.53006 * 109.46817 * 300.00010 * 15 12 11 19 19 C 1.47060 * 136.06000 * 359.94907 * 7 5 4 20 20 C 1.46687 * 106.11457 * 0.22365 * 4 3 2 21 21 C 1.34489 * 106.33490 * 359.63100 * 20 4 3 22 22 C 1.50699 * 125.57536 * 180.16179 * 21 20 4 23 23 O 1.42901 * 109.47200 * 150.24895 * 22 21 20 24 24 Si 1.86301 * 109.46925 * 30.24616 * 22 21 20 25 25 H 1.48503 * 109.47171 * 60.00333 * 24 22 21 26 26 H 1.48502 * 109.46725 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47228 * 299.99655 * 24 22 21 28 28 H 1.09004 * 109.47328 * 90.02529 * 1 2 3 29 29 H 1.08999 * 109.47280 * 210.02597 * 1 2 3 30 30 H 1.09002 * 109.47311 * 330.02076 * 1 2 3 31 31 H 1.08003 * 125.79705 * 359.96036 * 3 2 1 32 32 H 1.09000 * 113.46827 * 267.61848 * 8 7 5 33 33 H 1.09003 * 113.47151 * 38.06638 * 8 7 5 34 34 H 1.08995 * 114.20536 * 272.48261 * 9 8 7 35 35 H 1.08998 * 109.47234 * 295.00789 * 10 9 8 36 36 H 1.08999 * 109.46658 * 55.00254 * 10 9 8 37 37 H 1.09002 * 109.47280 * 60.00246 * 13 12 11 38 38 H 1.09008 * 109.47133 * 179.97438 * 13 12 11 39 39 H 1.08998 * 109.47501 * 299.99415 * 13 12 11 40 40 H 1.08999 * 109.47036 * 60.00131 * 14 12 11 41 41 H 1.09001 * 109.47000 * 179.97438 * 14 12 11 42 42 H 1.09001 * 109.46782 * 299.99745 * 14 12 11 43 43 H 1.08999 * 109.47103 * 59.99977 * 16 15 12 44 44 H 1.09000 * 109.46964 * 179.97438 * 16 15 12 45 45 H 1.09001 * 109.46915 * 300.00123 * 16 15 12 46 46 H 1.09002 * 109.47731 * 60.00028 * 17 15 12 47 47 H 1.09000 * 109.47257 * 179.97438 * 17 15 12 48 48 H 1.09007 * 109.47257 * 299.99437 * 17 15 12 49 49 H 1.09003 * 109.46539 * 60.00219 * 18 15 12 50 50 H 1.09001 * 109.46655 * 179.97438 * 18 15 12 51 51 H 1.08996 * 109.47286 * 300.00260 * 18 15 12 52 52 H 1.09007 * 113.46761 * 321.93701 * 19 7 5 53 53 H 1.08996 * 113.47187 * 92.31935 * 19 7 5 54 54 H 1.08002 * 126.83544 * 179.75049 * 20 4 3 55 55 H 1.09004 * 109.46672 * 270.24640 * 22 21 20 56 56 H 0.96705 * 113.99458 * 300.00096 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1050 0.0000 4 6 3.5461 0.7177 0.0006 5 6 4.7283 1.5958 0.0003 6 8 5.8446 1.1127 0.0004 7 7 4.5733 2.9346 -0.0002 8 6 5.4653 4.1038 -0.0010 9 6 4.3471 4.8886 -0.7010 10 6 4.1808 6.3249 -0.2008 11 8 3.1993 6.9949 -0.9943 12 14 2.9341 8.5428 -0.5539 13 6 2.3418 8.5934 1.2117 14 6 4.5182 9.5116 -0.7056 15 6 1.6391 9.2913 -1.6646 16 6 0.3383 8.4956 -1.5396 17 6 1.3908 10.7435 -1.2518 18 6 2.1251 9.2497 -3.1148 19 6 3.4378 3.8691 -0.0013 20 6 3.5374 -0.7492 -0.0045 21 6 2.2447 -1.1198 0.0006 22 6 1.7397 -2.5397 0.0015 23 8 0.4808 -2.5971 0.6753 24 14 2.9650 -3.6339 0.8803 25 1 3.1310 -3.1666 2.2801 26 1 2.4670 -5.0329 0.8818 27 1 4.2731 -3.5743 0.1800 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 1.8766 2.1240 -0.0006 32 1 5.6961 4.4745 0.9977 33 1 6.3542 3.9713 -0.6179 34 1 4.3565 4.8067 -1.7878 35 1 3.8593 6.3121 0.8406 36 1 5.1327 6.8499 -0.2807 37 1 3.0993 8.1554 1.8617 38 1 2.1650 9.6280 1.5061 39 1 1.4150 8.0267 1.3004 40 1 4.8647 9.4820 -1.7386 41 1 4.3409 10.5461 -0.4117 42 1 5.2756 9.0735 -0.0555 43 1 -0.0079 8.5252 -0.5064 44 1 -0.4195 8.9339 -2.1890 45 1 0.5155 7.4612 -1.8339 46 1 2.3176 11.3102 -1.3412 47 1 0.6335 11.1816 -1.9019 48 1 1.0447 10.7735 -0.2186 49 1 2.3022 8.2152 -3.4090 50 1 1.3672 9.6873 -3.7646 51 1 3.0518 9.8166 -3.2038 52 1 2.6029 3.5369 -0.6185 53 1 3.1274 4.1764 0.9973 54 1 4.3980 -1.4017 -0.0093 55 1 1.6178 -2.8826 -1.0260 56 1 0.5143 -2.3054 1.5968 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_13287730.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:14:38 Heat of formation + Delta-G solvation = -69.040522 kcal Electronic energy + Delta-G solvation = -31920.708329 eV Core-core repulsion = 27762.820536 eV Total energy + Delta-G solvation = -4157.887794 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.209 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.53626 -41.24937 -39.01191 -37.80820 -37.38204 -36.76541 -33.79405 -32.27390 -30.90610 -29.30883 -28.98958 -27.85040 -27.76821 -27.31439 -27.15646 -26.74645 -25.77163 -23.25372 -21.42229 -20.81247 -20.35952 -20.11468 -18.65715 -17.71304 -17.57257 -17.26993 -16.98637 -16.72068 -16.38783 -15.90608 -15.81040 -15.72722 -15.60725 -15.17511 -14.93077 -14.80807 -14.72447 -14.55942 -14.24326 -14.06394 -13.84807 -13.68745 -13.54695 -13.38130 -13.30535 -13.24617 -13.20122 -13.08833 -13.00637 -12.89607 -12.87704 -12.42474 -12.37459 -12.33721 -12.07433 -11.91478 -11.90276 -11.63903 -11.60370 -11.34545 -11.22425 -10.89448 -10.68743 -10.21745 -9.99337 -9.88381 -9.53496 -9.24426 0.67808 0.92649 1.32235 1.47084 1.52104 1.54957 1.79526 1.87393 1.91449 2.09397 2.20490 2.46553 2.55746 3.28527 3.30184 3.49716 3.70662 3.81829 3.98278 4.06562 4.16772 4.18322 4.18595 4.36440 4.40735 4.48738 4.51100 4.51384 4.52948 4.54576 4.60775 4.63132 4.71269 4.78890 4.80810 4.83767 4.85044 4.86968 4.87328 4.88120 4.90096 4.96331 5.05752 5.06776 5.14543 5.15466 5.25002 5.29496 5.40482 5.47254 5.50333 5.60117 5.62303 5.67696 5.72666 5.93475 6.21885 6.51732 6.70327 7.19229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.421 5.421 3 C 0.070 3.930 4 C -0.258 4.258 5 C 0.610 3.390 6 O -0.603 6.603 7 N -0.653 5.653 8 C 0.101 3.899 9 C -0.109 4.109 10 C 0.088 3.912 11 O -0.633 6.633 12 Si 1.328 2.672 13 C -0.518 4.518 14 C -0.525 4.525 15 C -0.387 4.387 16 C -0.136 4.136 17 C -0.142 4.142 18 C -0.137 4.137 19 C 0.098 3.902 20 C -0.175 4.175 21 C -0.014 4.014 22 C -0.041 4.041 23 O -0.541 6.541 24 Si 0.998 3.002 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.271 1.271 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.205 0.795 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.046 0.954 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.044 0.956 51 H 0.057 0.943 52 H 0.094 0.906 53 H 0.114 0.886 54 H 0.135 0.865 55 H 0.134 0.866 56 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.231 4.265 2.481 8.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.095 5.095 3 C -0.068 4.068 4 C -0.268 4.268 5 C 0.404 3.596 6 O -0.486 6.486 7 N -0.387 5.387 8 C -0.022 4.022 9 C -0.128 4.128 10 C 0.012 3.988 11 O -0.592 6.592 12 Si 1.457 2.543 13 C -0.620 4.620 14 C -0.626 4.626 15 C -0.428 4.428 16 C -0.193 4.193 17 C -0.199 4.199 18 C -0.195 4.195 19 C -0.023 4.023 20 C -0.199 4.199 21 C -0.124 4.124 22 C -0.152 4.152 23 O -0.348 6.348 24 Si 0.821 3.179 25 H -0.187 1.187 26 H -0.181 1.181 27 H -0.196 1.196 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.124 0.876 31 H 0.221 0.779 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.077 0.923 50 H 0.063 0.937 51 H 0.076 0.924 52 H 0.112 0.888 53 H 0.132 0.868 54 H 0.153 0.847 55 H 0.151 0.849 56 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.712 2.788 2.147 7.578 hybrid contribution 0.428 1.057 0.150 1.150 sum -6.284 3.845 2.297 7.717 Atomic orbital electron populations 1.22834 0.73941 1.07578 1.05166 1.43786 1.08313 1.04214 1.53191 1.22625 0.89021 0.93223 1.01891 1.20234 0.92272 0.93566 1.20755 1.17255 0.87762 0.80013 0.74590 1.90742 1.28253 1.75176 1.54459 1.49423 1.13424 1.02819 1.73011 1.23180 0.95282 0.81743 1.01966 1.22926 0.95331 0.93000 1.01582 1.22086 0.91520 0.91140 0.94016 1.85339 1.59668 1.49436 1.64796 0.75959 0.63508 0.52273 0.62558 1.27095 1.07041 1.04971 1.22863 1.27207 1.19945 1.10872 1.04569 1.26003 1.09374 1.01494 1.05977 1.21535 0.96088 0.99822 1.01863 1.21608 1.01815 0.94894 1.01571 1.21546 1.00766 1.01843 0.95311 1.23568 0.91106 0.85304 1.02367 1.21787 0.95826 0.93617 1.08686 1.20888 0.89944 0.90431 1.11140 1.24598 0.93404 0.93076 1.04145 1.86444 1.29135 1.89008 1.30219 0.85006 0.76259 0.77670 0.78962 1.18667 1.18144 1.19598 0.90206 0.86203 0.87616 0.77856 0.87555 0.91249 0.87263 0.89840 0.90666 0.90686 0.90819 0.90682 0.91478 0.90822 0.90867 0.91875 0.93812 0.92022 0.92111 0.93451 0.91691 0.92268 0.93702 0.92417 0.88754 0.86787 0.84702 0.84863 0.75823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.38 10.71 127.77 1.37 0.99 16 2 N -0.42 0.58 3.09 -533.24 -1.65 -1.06 16 3 C 0.07 0.00 10.50 83.91 0.88 0.89 16 4 C -0.26 -2.19 6.29 -19.04 -0.12 -2.31 16 5 C 0.61 7.82 8.06 86.62 0.70 8.51 16 6 O -0.60 -13.68 17.75 -4.14 -0.07 -13.75 16 7 N -0.65 -2.54 3.69 -862.44 -3.18 -5.72 16 8 C 0.10 -0.10 8.19 83.18 0.68 0.58 16 9 C -0.11 0.58 4.36 -10.46 -0.05 0.54 16 10 C 0.09 -0.70 5.04 71.98 0.36 -0.34 16 11 O -0.63 3.33 8.56 -148.98 -1.28 2.05 16 12 Si 1.33 -8.38 8.45 68.60 0.58 -7.80 16 13 C -0.52 3.33 8.50 113.37 0.96 4.29 16 14 C -0.53 2.27 8.50 113.37 0.96 3.23 16 15 C -0.39 1.23 0.53 -10.80 -0.01 1.23 16 16 C -0.14 0.40 7.85 71.98 0.56 0.96 16 17 C -0.14 0.44 7.85 71.98 0.56 1.00 16 18 C -0.14 0.19 7.85 71.98 0.56 0.76 16 19 C 0.10 -0.56 6.69 83.17 0.56 0.00 16 20 C -0.17 -1.53 9.49 23.62 0.22 -1.30 16 21 C -0.01 -0.03 6.13 40.98 0.25 0.22 16 22 C -0.04 0.09 2.98 71.24 0.21 0.30 16 23 O -0.54 2.68 9.95 -148.98 -1.48 1.20 16 24 Si 1.00 0.30 26.57 68.60 1.82 2.12 16 25 H -0.26 -0.60 7.11 99.48 0.71 0.11 16 26 H -0.26 -0.34 7.11 99.48 0.71 0.37 16 27 H -0.27 -1.22 6.81 99.48 0.68 -0.54 16 28 H 0.08 -0.69 8.14 -2.38 -0.02 -0.71 16 29 H 0.12 -1.14 4.93 -2.39 -0.01 -1.15 16 30 H 0.11 -1.38 8.13 -2.39 -0.02 -1.40 16 31 H 0.20 -1.49 5.18 -2.91 -0.02 -1.51 16 32 H 0.11 -0.54 8.10 -2.39 -0.02 -0.56 16 33 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 35 H 0.08 -1.01 6.88 -2.39 -0.02 -1.03 16 36 H 0.08 -0.74 7.21 -2.39 -0.02 -0.76 16 37 H 0.07 -0.58 7.48 -2.39 -0.02 -0.60 16 38 H 0.07 -0.43 7.79 -2.38 -0.02 -0.45 16 39 H 0.07 -0.49 7.79 -2.39 -0.02 -0.50 16 40 H 0.07 -0.20 7.79 -2.39 -0.02 -0.21 16 41 H 0.07 -0.31 7.79 -2.39 -0.02 -0.33 16 42 H 0.07 -0.40 7.48 -2.39 -0.02 -0.42 16 43 H 0.06 -0.30 7.79 -2.39 -0.02 -0.32 16 44 H 0.04 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.06 -0.20 7.97 -2.39 -0.02 -0.22 16 46 H 0.06 -0.25 7.79 -2.39 -0.02 -0.26 16 47 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 48 H 0.06 -0.31 7.79 -2.38 -0.02 -0.33 16 49 H 0.06 -0.08 7.97 -2.39 -0.02 -0.09 16 50 H 0.04 0.00 8.14 -2.39 -0.02 -0.02 16 51 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 52 H 0.09 -0.77 6.20 -2.38 -0.01 -0.79 16 53 H 0.11 -1.19 7.88 -2.39 -0.02 -1.21 16 54 H 0.14 1.47 6.70 -2.91 -0.02 1.45 16 55 H 0.13 -0.53 7.96 -2.39 -0.02 -0.55 16 56 H 0.39 -4.21 8.38 -74.05 -0.62 -4.83 16 Total: 0.00 -25.22 438.23 4.39 -20.83 By element: Atomic # 1 Polarization: -18.37 SS G_CDS: 0.96 Total: -17.41 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 8.69 Total: 19.54 kcal Atomic # 7 Polarization: -1.96 SS G_CDS: -4.83 Total: -6.78 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -2.83 Total: -10.50 kcal Atomic # 14 Polarization: -8.08 SS G_CDS: 2.40 Total: -5.68 kcal Total: -25.22 4.39 -20.83 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_13287730.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.215 kcal (2) G-P(sol) polarization free energy of solvation -25.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds