Wall clock time and date at job start Sun Mar 7 2021 00:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47046 * 2 1 4 4 C 1.53001 * 109.46991 * 240.00736 * 2 1 3 5 5 Si 1.86295 * 109.47216 * 120.00268 * 2 1 3 6 6 C 1.86299 * 109.47033 * 299.99937 * 5 2 1 7 7 C 1.86297 * 109.47222 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.46952 * 59.99923 * 5 2 1 9 9 C 1.42899 * 113.99946 * 179.97438 * 8 5 2 10 10 C 1.53004 * 109.47448 * 180.02562 * 9 8 5 11 11 C 1.53498 * 114.20765 * 175.00153 * 10 9 8 12 12 N 1.47070 * 87.98528 * 139.65412 * 11 10 9 13 13 C 1.34767 * 136.05988 * 152.84154 * 12 11 10 14 14 O 1.21555 * 119.99812 * 3.11300 * 13 12 11 15 15 C 1.47836 * 120.00275 * 183.11634 * 13 12 11 16 16 C 1.39987 * 120.56185 * 352.37403 * 15 13 12 17 17 C 1.38398 * 118.28831 * 179.73012 * 16 15 13 18 18 C 1.50708 * 120.34375 * 180.22821 * 17 16 15 19 19 O 1.42897 * 109.46919 * 300.00253 * 18 17 16 20 20 Si 1.86301 * 109.46860 * 179.97438 * 18 17 16 21 21 H 1.48504 * 109.46975 * 60.00296 * 20 18 17 22 22 H 1.48501 * 109.46790 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47349 * 300.00282 * 20 18 17 24 24 C 1.38305 * 119.30829 * 0.25028 * 17 16 15 25 25 N 1.31957 * 121.08073 * 0.02562 * 24 17 16 26 26 C 1.31666 * 121.87665 * 359.97438 * 25 24 17 27 27 C 1.47074 * 87.88328 * 333.10278 * 12 11 10 28 28 H 1.08999 * 109.47416 * 299.99771 * 1 2 3 29 29 H 1.09004 * 109.47175 * 59.99310 * 1 2 3 30 30 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46878 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47094 * 300.00354 * 3 2 1 33 33 H 1.09005 * 109.46516 * 60.00488 * 3 2 1 34 34 H 1.09007 * 109.46615 * 299.99380 * 4 2 1 35 35 H 1.08996 * 109.47517 * 59.99980 * 4 2 1 36 36 H 1.08997 * 109.46810 * 180.02562 * 4 2 1 37 37 H 1.09010 * 109.47126 * 179.97438 * 6 5 2 38 38 H 1.08995 * 109.47612 * 299.99937 * 6 5 2 39 39 H 1.09000 * 109.47182 * 60.00543 * 6 5 2 40 40 H 1.08999 * 109.47374 * 299.99939 * 7 5 2 41 41 H 1.09001 * 109.47386 * 59.99793 * 7 5 2 42 42 H 1.08996 * 109.47469 * 179.97438 * 7 5 2 43 43 H 1.09002 * 109.46994 * 59.99966 * 9 8 5 44 44 H 1.09005 * 109.47383 * 300.00092 * 9 8 5 45 45 H 1.09001 * 113.41053 * 41.79905 * 10 9 8 46 46 H 1.08993 * 113.46608 * 24.87697 * 11 10 9 47 47 H 1.09001 * 113.51786 * 254.43920 * 11 10 9 48 48 H 1.07999 * 120.85278 * 0.02562 * 16 15 13 49 49 H 1.09006 * 109.46792 * 60.00123 * 18 17 16 50 50 H 0.96699 * 113.99743 * 299.99475 * 19 18 17 51 51 H 1.07999 * 119.45750 * 180.02562 * 24 17 16 52 52 H 1.08000 * 119.71498 * 180.02562 * 26 25 24 53 53 H 1.08995 * 113.46702 * 141.67850 * 27 12 11 54 54 H 1.09005 * 113.46277 * 272.11662 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 14 2.1510 -0.8783 1.5210 6 6 1.5300 -0.0001 3.0422 7 6 4.0140 -0.8776 1.5214 8 8 1.6073 -2.4160 1.5209 9 6 2.0295 -3.1818 2.6511 10 6 1.4646 -4.5998 2.5462 11 6 1.9509 -5.5540 3.6459 12 7 0.5843 -6.0939 3.7096 13 6 0.0200 -7.2686 4.0530 14 8 0.7118 -8.1750 4.4742 15 6 -1.4403 -7.4548 3.9173 16 6 -2.2678 -6.3753 3.5865 17 6 -3.6274 -6.6040 3.4661 18 6 -4.5603 -5.4762 3.1067 19 8 -4.4736 -4.4517 4.0991 20 14 -6.3076 -6.1174 3.0261 21 1 -6.6916 -6.6753 4.3477 22 1 -7.2268 -5.0060 2.6725 23 1 -6.3972 -7.1818 1.9945 24 6 -4.1212 -7.8781 3.6796 25 7 -3.3177 -8.8759 3.9958 26 6 -2.0178 -8.7087 4.1220 27 6 0.1051 -4.7897 3.2273 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7488 -1.2493 35 1 1.6767 -0.2072 -2.1393 36 1 3.1299 -0.7215 -1.2491 37 1 1.8930 -0.5143 3.9322 38 1 1.8933 1.0275 3.0423 39 1 0.4400 -0.0002 3.0423 40 1 4.3777 -1.3911 0.6315 41 1 4.3770 0.1502 1.5217 42 1 4.3774 -1.3910 2.4116 43 1 1.6654 -2.7119 3.5648 44 1 3.1184 -3.2256 2.6742 45 1 1.5181 -5.0139 1.5393 46 1 2.2589 -5.0437 4.5583 47 1 2.6879 -6.2782 3.2987 48 1 -1.8553 -5.3904 3.4246 49 1 -4.2786 -5.0670 2.1364 50 1 -4.7108 -4.7454 4.9893 51 1 -5.1817 -8.0594 3.5859 52 1 -1.3925 -9.5501 4.3818 53 1 -0.7243 -4.8650 2.5241 54 1 -0.0835 -4.0737 4.0273 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_13287814.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:19 Heat of formation + Delta-G solvation = -77.676486 kcal Electronic energy + Delta-G solvation = -31642.123449 eV Core-core repulsion = 27511.172650 eV Total energy + Delta-G solvation = -4130.950799 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.16659 -41.05023 -39.25302 -37.87042 -37.42875 -36.75682 -34.14338 -33.21241 -31.44913 -29.30499 -28.97998 -27.79032 -27.55406 -27.31659 -27.27992 -26.86432 -25.31445 -23.51018 -21.81791 -20.47701 -20.34529 -18.80203 -18.48767 -18.15617 -17.63870 -17.31294 -17.17900 -16.93878 -16.34966 -16.16202 -15.83580 -15.73134 -15.44644 -14.93080 -14.81311 -14.74830 -14.66729 -14.56978 -14.32327 -14.02620 -13.80430 -13.60934 -13.50174 -13.46069 -13.30175 -13.24131 -13.08888 -12.88876 -12.87176 -12.71004 -12.44475 -12.33165 -12.17374 -12.05154 -11.92717 -11.64461 -11.60984 -11.49927 -11.25114 -11.15624 -11.07479 -10.60373 -10.53140 -10.28580 -10.20950 -9.98692 -9.84619 -0.61309 -0.06409 1.13180 1.46675 1.49488 1.51560 1.57378 1.69577 1.87916 1.92948 2.21378 2.54209 2.57893 3.00097 3.23798 3.33694 3.37508 3.55372 3.61782 3.68579 3.92676 3.98190 4.07650 4.18923 4.19072 4.26997 4.34569 4.41833 4.45484 4.52257 4.57702 4.59483 4.60758 4.66321 4.78101 4.78679 4.81981 4.84089 4.86834 4.87576 4.88277 4.88810 4.90588 5.06513 5.15386 5.16213 5.22362 5.28646 5.32351 5.41299 5.48198 5.50903 5.61969 5.68361 5.73651 6.46463 6.62471 6.66305 6.86613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.387 4.387 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.331 2.669 6 C -0.520 4.520 7 C -0.524 4.524 8 O -0.633 6.633 9 C 0.086 3.914 10 C -0.109 4.109 11 C 0.103 3.897 12 N -0.646 5.646 13 C 0.588 3.412 14 O -0.578 6.578 15 C -0.189 4.189 16 C -0.019 4.019 17 C -0.172 4.172 18 C -0.066 4.066 19 O -0.543 6.543 20 Si 0.966 3.034 21 H -0.251 1.251 22 H -0.264 1.264 23 H -0.255 1.255 24 C 0.111 3.889 25 N -0.501 5.501 26 C 0.151 3.849 27 C 0.087 3.913 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.077 0.923 48 H 0.178 0.822 49 H 0.142 0.858 50 H 0.390 0.610 51 H 0.169 0.831 52 H 0.165 0.835 53 H 0.099 0.901 54 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 6.883 -0.545 6.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.429 4.429 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.459 2.541 6 C -0.621 4.621 7 C -0.625 4.625 8 O -0.592 6.592 9 C 0.010 3.990 10 C -0.128 4.128 11 C -0.019 4.019 12 N -0.379 5.379 13 C 0.379 3.621 14 O -0.459 6.459 15 C -0.195 4.195 16 C -0.045 4.045 17 C -0.174 4.174 18 C -0.178 4.178 19 O -0.350 6.350 20 Si 0.790 3.210 21 H -0.175 1.175 22 H -0.189 1.189 23 H -0.180 1.180 24 C -0.045 4.045 25 N -0.209 5.209 26 C -0.007 4.007 27 C -0.034 4.034 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.096 0.904 48 H 0.195 0.805 49 H 0.159 0.841 50 H 0.240 0.760 51 H 0.186 0.814 52 H 0.182 0.818 53 H 0.117 0.883 54 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.439 5.229 -0.825 5.486 hybrid contribution 0.916 0.713 0.313 1.202 sum -0.523 5.942 -0.513 5.987 Atomic orbital electron populations 1.21542 0.94112 1.02025 1.01692 1.26021 1.00545 1.02810 1.13523 1.21611 1.01150 0.95078 1.02077 1.21545 1.00873 1.00172 0.96862 0.75913 0.61863 0.52724 0.63586 1.27119 1.07113 1.09659 1.18226 1.27192 1.25988 1.04760 1.04572 1.85344 1.79440 1.46291 1.48159 1.22113 0.99520 0.89728 0.87614 1.22906 0.95295 0.95049 0.99589 1.23259 0.84634 0.94574 0.99413 1.49467 1.12330 1.11124 1.64978 1.17688 0.86822 0.81022 0.76556 1.90795 1.64563 1.42458 1.48060 1.20913 0.93676 0.96750 1.08112 1.22463 0.92342 0.99831 0.89852 1.21533 0.95993 0.96870 1.03020 1.24894 1.06967 0.89562 0.96342 1.86506 1.91785 1.35553 1.21164 0.85414 0.74841 0.79211 0.81487 1.17520 1.18899 1.17955 1.23267 1.00545 0.88581 0.92125 1.67832 1.04887 1.34650 1.13540 1.23099 0.90751 0.96170 0.90710 1.23723 0.99046 0.81946 0.98649 0.91976 0.93845 0.91994 0.92046 0.93485 0.91771 0.92198 0.93756 0.92352 0.90630 0.90869 0.90825 0.91389 0.90860 0.90764 0.89881 0.90362 0.86881 0.87108 0.90401 0.80544 0.84072 0.76029 0.81416 0.81767 0.88313 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.37 7.85 71.98 0.56 0.93 16 2 C -0.39 1.30 0.53 -10.79 -0.01 1.30 16 3 C -0.14 0.44 7.85 71.98 0.56 1.01 16 4 C -0.14 0.25 7.85 71.98 0.56 0.82 16 5 Si 1.33 -9.06 8.45 68.60 0.58 -8.48 16 6 C -0.52 3.37 8.50 113.37 0.96 4.33 16 7 C -0.52 2.71 8.50 113.37 0.96 3.68 16 8 O -0.63 3.90 8.56 -148.98 -1.28 2.63 16 9 C 0.09 -0.82 5.04 71.98 0.36 -0.45 16 10 C -0.11 0.84 4.34 -10.55 -0.05 0.80 16 11 C 0.10 -0.48 8.20 83.18 0.68 0.20 16 12 N -0.65 0.05 3.69 -862.20 -3.18 -3.12 16 13 C 0.59 4.22 8.01 86.79 0.70 4.92 16 14 O -0.58 -8.97 17.18 -3.89 -0.07 -9.04 16 15 C -0.19 -0.81 5.89 -19.99 -0.12 -0.92 16 16 C -0.02 0.03 8.88 22.73 0.20 0.23 16 17 C -0.17 0.41 5.39 -19.81 -0.11 0.30 16 18 C -0.07 0.43 2.83 71.24 0.20 0.63 16 19 O -0.54 3.27 12.78 -148.98 -1.90 1.37 16 20 Si 0.97 -4.83 25.10 68.60 1.72 -3.11 16 21 H -0.25 1.06 7.11 99.48 0.71 1.77 16 22 H -0.26 0.46 7.11 99.48 0.71 1.17 16 23 H -0.26 0.84 7.11 99.48 0.71 1.55 16 24 C 0.11 0.14 9.84 84.69 0.83 0.98 16 25 N -0.50 -3.34 10.35 -194.76 -2.01 -5.36 16 26 C 0.15 1.02 10.77 85.04 0.92 1.94 16 27 C 0.09 -0.66 6.10 83.09 0.51 -0.15 16 28 H 0.06 -0.26 7.79 -2.39 -0.02 -0.28 16 29 H 0.04 -0.04 8.14 -2.38 -0.02 -0.06 16 30 H 0.06 -0.19 7.97 -2.39 -0.02 -0.21 16 31 H 0.06 -0.26 7.79 -2.39 -0.02 -0.28 16 32 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.06 -0.30 7.79 -2.38 -0.02 -0.32 16 34 H 0.06 -0.11 7.97 -2.38 -0.02 -0.13 16 35 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 37 H 0.07 -0.61 7.48 -2.38 -0.02 -0.63 16 38 H 0.07 -0.43 7.79 -2.39 -0.02 -0.44 16 39 H 0.07 -0.45 7.79 -2.39 -0.02 -0.47 16 40 H 0.07 -0.27 7.79 -2.39 -0.02 -0.28 16 41 H 0.07 -0.35 7.79 -2.39 -0.02 -0.37 16 42 H 0.07 -0.49 7.48 -2.39 -0.02 -0.51 16 43 H 0.08 -1.11 6.89 -2.39 -0.02 -1.13 16 44 H 0.08 -0.92 7.22 -2.38 -0.02 -0.94 16 45 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 46 H 0.11 -0.95 8.10 -2.39 -0.02 -0.97 16 47 H 0.08 -0.20 8.14 -2.39 -0.02 -0.21 16 48 H 0.18 -1.11 4.01 -2.91 -0.01 -1.12 16 49 H 0.14 -1.35 7.96 -2.38 -0.02 -1.37 16 50 H 0.39 -4.44 8.70 -74.06 -0.64 -5.08 16 51 H 0.17 -0.40 4.88 -2.91 -0.01 -0.41 16 52 H 0.17 1.19 7.68 -2.91 -0.02 1.16 16 53 H 0.10 -0.89 6.14 -2.39 -0.01 -0.90 16 54 H 0.12 -1.38 7.88 -2.38 -0.02 -1.40 16 Total: 0.00 -20.04 427.16 2.61 -17.42 By element: Atomic # 1 Polarization: -13.85 SS G_CDS: 1.00 Total: -12.85 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 7.75 Total: 20.53 kcal Atomic # 7 Polarization: -3.29 SS G_CDS: -5.19 Total: -8.48 kcal Atomic # 8 Polarization: -1.79 SS G_CDS: -3.25 Total: -5.04 kcal Atomic # 14 Polarization: -13.89 SS G_CDS: 2.30 Total: -11.58 kcal Total: -20.04 2.61 -17.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_13287814.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.252 kcal (2) G-P(sol) polarization free energy of solvation -20.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds