Wall clock time and date at job start Sun Mar 7 2021 00:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36414 * 125.79823 * 2 1 4 4 C 1.47374 * 127.19569 * 359.97438 * 3 2 1 5 5 O 1.21616 * 120.00240 * 0.02562 * 4 3 2 6 6 N 1.34783 * 120.00404 * 180.02562 * 4 3 2 7 7 C 1.47065 * 136.05361 * 359.63433 * 6 4 3 8 8 C 1.53236 * 88.08029 * 207.19894 * 7 6 4 9 9 C 1.52993 * 114.32629 * 220.46718 * 8 7 6 10 10 O 1.42902 * 109.47468 * 268.76031 * 9 8 7 11 11 Si 1.63095 * 114.00189 * 180.02562 * 10 9 8 12 12 C 1.86310 * 109.47079 * 299.99915 * 11 10 9 13 13 C 1.86294 * 109.47566 * 59.99941 * 11 10 9 14 14 C 1.86308 * 109.47223 * 180.02562 * 11 10 9 15 15 C 1.52999 * 109.46739 * 59.99742 * 14 11 10 16 16 C 1.53000 * 109.46906 * 179.97438 * 14 11 10 17 17 C 1.53001 * 109.46668 * 299.99580 * 14 11 10 18 18 C 1.47067 * 136.05896 * 179.97438 * 6 4 3 19 19 C 1.47029 * 105.61423 * 179.97438 * 3 2 1 20 20 C 1.34177 * 105.95271 * 0.23221 * 19 3 2 21 21 C 1.50696 * 125.43736 * 179.74229 * 20 19 3 22 22 O 1.42899 * 109.47230 * 299.99447 * 21 20 19 23 23 Si 1.86294 * 109.47220 * 179.97438 * 21 20 19 24 24 H 1.48504 * 109.47344 * 60.00115 * 23 21 20 25 25 H 1.48504 * 109.47273 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47298 * 299.99740 * 23 21 20 27 27 O 1.33647 * 125.80133 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47629 * 90.00165 * 1 2 3 29 29 H 1.09005 * 109.46808 * 209.99760 * 1 2 3 30 30 H 1.08999 * 109.47327 * 329.99094 * 1 2 3 31 31 H 1.08998 * 113.46922 * 321.93147 * 7 6 4 32 32 H 1.08996 * 113.47034 * 92.37274 * 7 6 4 33 33 H 1.09004 * 114.01723 * 87.71464 * 8 7 6 34 34 H 1.09000 * 109.47322 * 28.76237 * 9 8 7 35 35 H 1.08998 * 109.47163 * 148.75797 * 9 8 7 36 36 H 1.08998 * 109.46602 * 59.99772 * 12 11 10 37 37 H 1.08998 * 109.47135 * 180.02562 * 12 11 10 38 38 H 1.08996 * 109.47005 * 300.00201 * 12 11 10 39 39 H 1.08997 * 109.46974 * 59.99781 * 13 11 10 40 40 H 1.09003 * 109.47696 * 180.02562 * 13 11 10 41 41 H 1.09009 * 109.47258 * 300.00357 * 13 11 10 42 42 H 1.08997 * 109.47405 * 60.00531 * 15 14 11 43 43 H 1.09004 * 109.46463 * 180.02562 * 15 14 11 44 44 H 1.09001 * 109.47092 * 299.99688 * 15 14 11 45 45 H 1.08996 * 109.47377 * 59.99862 * 16 14 11 46 46 H 1.08998 * 109.46600 * 179.97438 * 16 14 11 47 47 H 1.08997 * 109.47459 * 299.99604 * 16 14 11 48 48 H 1.09000 * 109.46811 * 60.00437 * 17 14 11 49 49 H 1.08998 * 109.47037 * 179.97438 * 17 14 11 50 50 H 1.08996 * 109.47304 * 299.99948 * 17 14 11 51 51 H 1.09001 * 113.46365 * 267.62310 * 18 6 4 52 52 H 1.08993 * 113.46614 * 38.06435 * 18 6 4 53 53 H 1.08002 * 127.02021 * 179.97438 * 19 3 2 54 54 H 1.09004 * 109.47055 * 59.99415 * 21 20 19 55 55 H 0.96700 * 114.00042 * 300.00308 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.1064 0.0000 4 6 1.8739 2.5157 -0.0005 5 8 0.6889 2.7892 -0.0006 6 7 2.7929 3.5016 -0.0010 7 6 4.2615 3.5802 0.0054 8 6 4.1342 4.9410 0.6984 9 6 5.1202 5.9981 0.1973 10 8 6.3079 5.9560 0.9909 11 14 7.4396 7.0443 0.5495 12 6 7.9465 6.7319 -1.2158 13 6 6.7392 8.7641 0.6993 14 6 8.9262 6.8797 1.6603 15 6 9.5012 5.4672 1.5366 16 6 9.9880 7.9002 1.2458 17 6 8.5102 7.1359 3.1102 18 6 2.7685 4.9721 -0.0020 19 6 3.6849 0.5991 0.0006 20 6 3.5859 -0.7390 -0.0043 21 6 4.7459 -1.7009 -0.0112 22 8 5.5393 -1.4820 -1.1793 23 14 4.1027 -3.4493 -0.0154 24 1 3.2712 -3.6680 -1.2262 25 1 5.2459 -4.3973 -0.0216 26 1 3.2785 -3.6766 1.1988 27 8 2.2888 -1.0839 0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5140 31 1 4.7342 2.8204 0.6277 32 1 4.6973 3.6400 -0.9918 33 1 4.0780 4.8818 1.7854 34 1 5.3715 5.7960 -0.8439 35 1 4.6654 6.9855 0.2762 36 1 7.0769 6.8279 -1.8659 37 1 8.7032 7.4590 -1.5107 38 1 8.3563 5.7257 -1.3035 39 1 6.4426 8.9469 1.7321 40 1 7.4954 9.4915 0.4039 41 1 5.8695 8.8602 0.0491 42 1 9.7975 5.2847 0.5037 43 1 10.3707 5.3708 2.1869 44 1 8.7448 4.7399 1.8317 45 1 9.5786 8.9066 1.3335 46 1 10.8576 7.8042 1.8960 47 1 10.2843 7.7173 0.2130 48 1 7.7539 6.4085 3.4052 49 1 9.3798 7.0392 3.7602 50 1 8.1006 8.1421 3.1983 51 1 2.8030 5.4060 -1.0013 52 1 1.9741 5.3934 0.6139 53 1 4.5928 1.1841 0.0004 54 1 5.3561 -1.5407 0.8778 55 1 5.0598 -1.6073 -2.0096 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_13308374.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:30 Heat of formation + Delta-G solvation = -108.890130 kcal Electronic energy + Delta-G solvation = -32247.585902 eV Core-core repulsion = 27990.251437 eV Total energy + Delta-G solvation = -4257.334464 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.198 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.82040 -41.43769 -39.21363 -38.00139 -37.41811 -36.76827 -34.25764 -33.21488 -31.67306 -29.45593 -29.26742 -28.99410 -27.79629 -27.31843 -27.17480 -27.10634 -25.47280 -23.89803 -22.21300 -21.34445 -20.36033 -19.76613 -18.70124 -18.09592 -17.78888 -17.66280 -17.20015 -17.00837 -16.66549 -16.14354 -15.86609 -15.81126 -15.59765 -15.22336 -14.84072 -14.78269 -14.73333 -14.48952 -14.29903 -14.07910 -13.95603 -13.85171 -13.80896 -13.56746 -13.45705 -13.32898 -13.24960 -13.09929 -12.91654 -12.89814 -12.88083 -12.79634 -12.44802 -12.34268 -12.24549 -12.07451 -11.93277 -11.64389 -11.61502 -11.38380 -11.23983 -11.00069 -10.93252 -10.59457 -10.22467 -9.99636 -9.88886 -9.54404 0.16695 0.79665 1.06454 1.32360 1.45670 1.53976 1.67914 1.81060 1.87192 1.90636 2.18681 2.20189 2.54084 3.18771 3.26584 3.42569 3.49947 3.73178 3.94801 4.01551 4.08724 4.17917 4.18058 4.29365 4.35138 4.40491 4.42435 4.50498 4.52375 4.53266 4.56418 4.60267 4.61904 4.71472 4.77922 4.81015 4.83294 4.85664 4.86799 4.87321 4.89003 4.91487 5.05508 5.10350 5.14395 5.14981 5.18897 5.23747 5.28067 5.40174 5.46939 5.49977 5.61056 5.67235 5.72020 5.86601 6.55002 6.58468 7.00757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.081 3.919 3 C -0.264 4.264 4 C 0.612 3.388 5 O -0.580 6.580 6 N -0.647 5.647 7 C 0.098 3.902 8 C -0.111 4.111 9 C 0.088 3.912 10 O -0.634 6.634 11 Si 1.327 2.673 12 C -0.519 4.519 13 C -0.523 4.523 14 C -0.386 4.386 15 C -0.137 4.137 16 C -0.142 4.142 17 C -0.137 4.137 18 C 0.105 3.895 19 C -0.147 4.147 20 C -0.063 4.063 21 C -0.031 4.031 22 O -0.536 6.536 23 Si 0.987 3.013 24 H -0.263 1.263 25 H -0.252 1.252 26 H -0.266 1.266 27 O -0.179 6.179 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.043 0.957 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.044 0.956 50 H 0.058 0.942 51 H 0.108 0.892 52 H 0.076 0.924 53 H 0.179 0.821 54 H 0.155 0.845 55 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.625 0.963 -1.767 4.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.028 3.972 3 C -0.268 4.268 4 C 0.405 3.595 5 O -0.462 6.462 6 N -0.381 5.381 7 C -0.024 4.024 8 C -0.130 4.130 9 C 0.012 3.988 10 O -0.594 6.594 11 Si 1.456 2.544 12 C -0.621 4.621 13 C -0.624 4.624 14 C -0.428 4.428 15 C -0.194 4.194 16 C -0.199 4.199 17 C -0.194 4.194 18 C -0.017 4.017 19 C -0.166 4.166 20 C -0.111 4.111 21 C -0.141 4.141 22 O -0.343 6.343 23 Si 0.810 3.190 24 H -0.187 1.187 25 H -0.175 1.175 26 H -0.191 1.191 27 O -0.076 6.076 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.063 0.937 50 H 0.077 0.923 51 H 0.126 0.874 52 H 0.095 0.905 53 H 0.196 0.804 54 H 0.173 0.827 55 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.873 -0.301 -1.146 3.108 hybrid contribution -0.014 0.959 -0.416 1.045 sum 2.859 0.658 -1.562 3.323 Atomic orbital electron populations 1.20697 0.82611 1.05472 1.05232 1.23189 0.94775 0.82940 0.96301 1.21147 0.94534 0.93024 1.18111 1.16859 0.83838 0.83539 0.75309 1.90750 1.17508 1.84269 1.53688 1.49346 1.08978 1.07495 1.72245 1.23500 0.78962 0.97660 1.02248 1.22903 0.93597 0.94813 1.01666 1.22088 0.83938 0.98818 0.93930 1.85345 1.35249 1.74034 1.64746 0.75987 0.58528 0.57466 0.62453 1.27110 1.06552 1.05361 1.23033 1.27167 1.07603 1.22938 1.04658 1.26000 1.12772 0.98000 1.06055 1.21540 1.00654 0.95370 1.01812 1.21605 0.98245 0.98481 1.01534 1.21541 1.01019 1.01636 0.95236 1.23205 0.97312 0.79029 1.02162 1.22976 0.96438 0.93512 1.03704 1.23133 0.82773 0.96308 1.08853 1.24407 0.90026 1.06136 0.93569 1.86546 1.38582 1.93230 1.15913 0.85087 0.78869 0.74079 0.80968 1.18726 1.17519 1.19066 1.83677 1.17156 1.35148 1.71664 0.88234 0.88317 0.88585 0.89285 0.87273 0.87174 0.90076 0.90324 0.90693 0.90755 0.90926 0.91347 0.90749 0.90773 0.91989 0.93745 0.92175 0.91981 0.93428 0.91764 0.92320 0.93684 0.92270 0.87358 0.90502 0.80362 0.82736 0.75692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 9.89 71.24 0.70 0.48 16 2 C 0.08 0.50 7.37 25.26 0.19 0.69 16 3 C -0.26 -1.84 6.31 -18.99 -0.12 -1.96 16 4 C 0.61 5.90 8.06 86.65 0.70 6.60 16 5 O -0.58 -9.22 15.62 -4.08 -0.06 -9.28 16 6 N -0.65 -1.94 3.69 -862.77 -3.19 -5.12 16 7 C 0.10 -0.39 6.76 83.09 0.56 0.17 16 8 C -0.11 0.56 4.34 -10.54 -0.05 0.51 16 9 C 0.09 -0.66 5.04 71.98 0.36 -0.29 16 10 O -0.63 2.74 8.56 -148.98 -1.28 1.46 16 11 Si 1.33 -7.40 8.45 68.60 0.58 -6.82 16 12 C -0.52 2.76 8.50 113.37 0.96 3.72 16 13 C -0.52 2.26 8.50 113.37 0.96 3.22 16 14 C -0.39 0.93 0.53 -10.79 -0.01 0.92 16 15 C -0.14 0.21 7.85 71.98 0.56 0.78 16 16 C -0.14 0.35 7.85 71.98 0.56 0.92 16 17 C -0.14 0.13 7.85 71.98 0.56 0.69 16 18 C 0.10 -0.24 8.20 83.19 0.68 0.44 16 19 C -0.15 -0.32 10.00 23.65 0.24 -0.08 16 20 C -0.06 -0.10 6.20 24.76 0.15 0.05 16 21 C -0.03 0.10 2.97 71.23 0.21 0.31 16 22 O -0.54 1.74 12.86 -148.98 -1.92 -0.17 16 23 Si 0.99 -1.57 27.37 68.60 1.88 0.31 16 24 H -0.26 -0.17 7.11 99.48 0.71 0.54 16 25 H -0.25 0.13 7.11 99.48 0.71 0.83 16 26 H -0.27 -0.43 7.11 99.48 0.71 0.28 16 27 O -0.18 -0.85 8.89 4.44 0.04 -0.81 16 28 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.10 -0.14 8.14 -2.38 -0.02 -0.16 16 30 H 0.10 0.58 6.49 -2.39 -0.02 0.57 16 31 H 0.09 -0.41 6.19 -2.39 -0.01 -0.42 16 32 H 0.11 -0.85 7.88 -2.39 -0.02 -0.86 16 33 H 0.11 -0.35 8.14 -2.38 -0.02 -0.37 16 34 H 0.08 -0.90 6.88 -2.39 -0.02 -0.92 16 35 H 0.08 -0.79 7.21 -2.39 -0.02 -0.81 16 36 H 0.07 -0.51 7.48 -2.39 -0.02 -0.52 16 37 H 0.07 -0.37 7.79 -2.39 -0.02 -0.39 16 38 H 0.07 -0.35 7.79 -2.39 -0.02 -0.37 16 39 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 40 H 0.07 -0.31 7.79 -2.39 -0.02 -0.33 16 41 H 0.07 -0.42 7.48 -2.38 -0.02 -0.44 16 42 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 43 H 0.04 0.00 8.14 -2.38 -0.02 -0.02 16 44 H 0.06 -0.09 7.97 -2.39 -0.02 -0.11 16 45 H 0.06 -0.23 7.80 -2.39 -0.02 -0.25 16 46 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.06 -0.26 7.79 -2.39 -0.02 -0.28 16 48 H 0.06 -0.04 7.97 -2.39 -0.02 -0.06 16 49 H 0.04 0.02 8.14 -2.39 -0.02 0.00 16 50 H 0.06 -0.12 7.80 -2.39 -0.02 -0.14 16 51 H 0.11 -0.68 8.10 -2.39 -0.02 -0.70 16 52 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 53 H 0.18 -0.38 5.57 -2.91 -0.02 -0.39 16 54 H 0.16 -1.07 7.96 -2.38 -0.02 -1.09 16 55 H 0.39 -3.49 8.70 -74.06 -0.64 -4.13 16 Total: 0.00 -18.59 438.18 4.28 -14.31 By element: Atomic # 1 Polarization: -12.02 SS G_CDS: 0.98 Total: -11.04 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 7.25 Total: 17.17 kcal Atomic # 7 Polarization: -1.94 SS G_CDS: -3.19 Total: -5.12 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -3.22 Total: -8.80 kcal Atomic # 14 Polarization: -8.97 SS G_CDS: 2.46 Total: -6.52 kcal Total: -18.59 4.28 -14.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_13308374.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.581 kcal (2) G-P(sol) polarization free energy of solvation -18.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds