Wall clock time and date at job start Sun Mar 7 2021 00:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47010 * 2 1 4 4 C 1.53005 * 109.47024 * 239.99937 * 2 1 3 5 5 Si 1.86294 * 109.47097 * 119.99936 * 2 1 3 6 6 C 1.86302 * 109.47307 * 300.00023 * 5 2 1 7 7 C 1.86301 * 109.47374 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.47241 * 59.99914 * 5 2 1 9 9 C 1.42903 * 113.99937 * 179.97438 * 8 5 2 10 10 C 1.53000 * 109.46818 * 180.02562 * 9 8 5 11 11 C 1.53949 * 113.74397 * 273.74341 * 10 9 8 12 12 N 1.47815 * 86.03752 * 222.08517 * 11 10 9 13 13 C 1.34772 * 134.45714 * 204.64185 * 12 11 10 14 14 O 1.21591 * 119.99942 * 174.53842 * 13 12 11 15 15 C 1.47540 * 119.99978 * 354.53927 * 13 12 11 16 16 C 1.39668 * 120.18884 * 335.27888 * 15 13 12 17 17 C 1.37825 * 119.90298 * 180.02562 * 16 15 13 18 18 C 1.38504 * 120.30320 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.80441 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.47056 * 119.99605 * 19 18 17 21 21 Si 1.86297 * 109.47440 * 359.97438 * 19 18 17 22 22 H 1.48500 * 109.46944 * 59.99804 * 21 19 18 23 23 H 1.48498 * 109.47396 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46968 * 300.00256 * 21 19 18 25 25 C 1.38098 * 120.39163 * 359.97438 * 18 17 16 26 26 C 1.38674 * 120.07965 * 359.76354 * 25 18 17 27 27 O 1.35652 * 120.14702 * 180.27432 * 26 25 18 28 28 C 1.47587 * 91.04899 * 24.54567 * 12 11 10 29 29 H 1.08991 * 109.47259 * 299.99817 * 1 2 3 30 30 H 1.08999 * 109.47354 * 60.00370 * 1 2 3 31 31 H 1.09007 * 109.46986 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47177 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47266 * 299.99994 * 3 2 1 34 34 H 1.09003 * 109.47297 * 59.99748 * 3 2 1 35 35 H 1.08997 * 109.46748 * 300.00085 * 4 2 1 36 36 H 1.09002 * 109.47052 * 60.00128 * 4 2 1 37 37 H 1.08996 * 109.46723 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.47175 * 179.97438 * 6 5 2 39 39 H 1.08997 * 109.47042 * 300.00227 * 6 5 2 40 40 H 1.09004 * 109.47060 * 59.99973 * 6 5 2 41 41 H 1.08996 * 109.46870 * 300.00731 * 7 5 2 42 42 H 1.09007 * 109.46767 * 59.99941 * 7 5 2 43 43 H 1.08999 * 109.47630 * 179.97438 * 7 5 2 44 44 H 1.08998 * 109.46791 * 60.00821 * 9 8 5 45 45 H 1.08997 * 109.47275 * 299.99707 * 9 8 5 46 46 H 1.08998 * 112.94814 * 45.33505 * 10 9 8 47 47 H 1.08997 * 113.76486 * 336.34916 * 11 10 9 48 48 H 1.08993 * 113.76874 * 107.74971 * 11 10 9 49 49 H 1.07993 * 120.04804 * 359.97438 * 16 15 13 50 50 H 1.08005 * 119.84955 * 180.02562 * 17 16 15 51 51 H 1.09000 * 109.47001 * 239.99408 * 19 18 17 52 52 H 0.96693 * 114.00427 * 299.99864 * 20 19 18 53 53 H 1.07992 * 119.96208 * 180.02562 * 25 18 17 54 54 H 0.96697 * 114.00468 * 270.24104 * 27 26 25 55 55 H 1.08994 * 113.76917 * 221.14900 * 28 12 11 56 56 H 1.08999 * 113.76591 * 89.75748 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8789 1.5208 8 8 1.6073 -2.4159 1.5212 9 6 2.0295 -3.1816 2.6515 10 6 1.4646 -4.5997 2.5465 11 6 0.0467 -4.7467 3.1280 12 7 0.5278 -6.0178 3.7092 13 6 -0.0680 -7.1603 4.1043 14 8 0.6073 -8.1044 4.4662 15 6 -1.5397 -7.2654 4.0975 16 6 -2.3263 -6.1154 4.1948 17 6 -3.7006 -6.2205 4.1884 18 6 -4.3061 -7.4620 4.0865 19 6 -5.8096 -7.5639 4.0812 20 8 -6.2418 -8.1691 2.8609 21 14 -6.5481 -5.8596 4.2252 22 1 -6.1042 -5.0291 3.0770 23 1 -8.0297 -5.9601 4.2206 24 1 -6.0990 -5.2311 5.4936 25 6 -3.5402 -8.6070 3.9896 26 6 -2.1562 -8.5195 3.9890 27 8 -1.4026 -9.6429 3.8884 28 6 1.9220 -5.5346 3.6808 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2495 38 1 1.8930 -0.5141 3.9323 39 1 1.8933 1.0277 3.0422 40 1 0.4400 0.0000 3.0423 41 1 4.3770 -1.3929 0.6308 42 1 4.3777 0.1487 1.5205 43 1 4.3774 -1.3923 2.4110 44 1 1.6653 -2.7118 3.5651 45 1 3.1183 -3.2255 2.6744 46 1 1.5774 -5.0295 1.5513 47 1 -0.2035 -3.9904 3.8720 48 1 -0.7274 -4.8735 2.3714 49 1 -1.8585 -5.1455 4.2757 50 1 -4.3081 -5.3307 4.2632 51 1 -6.1355 -8.1732 4.9242 52 1 -5.9862 -7.6798 2.0670 53 1 -4.0196 -9.5714 3.9100 54 1 -1.1820 -10.0461 4.7391 55 1 2.6422 -6.2892 3.3647 56 1 2.2237 -5.0103 4.5875 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_13422076.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:58 Heat of formation + Delta-G solvation = -140.869532 kcal Electronic energy + Delta-G solvation = -33630.363496 eV Core-core repulsion = 29243.416160 eV Total energy + Delta-G solvation = -4386.947336 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 381.198 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.86349 -40.67505 -39.10135 -38.33610 -37.36502 -37.09817 -36.77193 -33.22802 -31.27580 -31.15906 -29.31657 -28.99786 -27.86561 -27.77522 -27.32769 -27.23867 -26.22409 -23.89111 -23.22557 -21.67010 -20.59146 -20.36099 -19.17310 -18.49908 -18.33910 -17.65445 -17.43734 -17.18514 -16.74760 -16.37259 -16.19194 -16.03093 -15.81955 -15.61511 -15.40960 -15.10471 -14.90665 -14.79919 -14.71857 -14.30177 -14.25917 -13.88166 -13.78335 -13.58522 -13.56094 -13.36779 -13.30192 -13.16355 -13.09757 -12.90553 -12.88583 -12.84975 -12.45367 -12.36922 -12.34518 -12.15037 -12.04223 -12.03159 -11.66869 -11.64381 -11.54749 -11.36588 -11.25056 -10.83986 -10.50696 -10.22805 -10.09087 -10.00015 -9.90052 -9.69221 -0.41346 0.11190 1.16636 1.50815 1.52502 1.54449 1.65638 1.71954 1.86543 1.95685 2.19976 2.48065 2.53858 3.10116 3.20981 3.36375 3.51852 3.59694 3.74500 3.96226 3.98036 4.00692 4.17370 4.17452 4.24706 4.34371 4.39309 4.45640 4.50111 4.51766 4.57674 4.59086 4.64122 4.71420 4.78025 4.80181 4.81628 4.83968 4.85393 4.86573 4.87437 4.89173 5.00195 5.04905 5.13740 5.14581 5.16600 5.20672 5.23774 5.27663 5.39756 5.46341 5.49440 5.57505 5.60618 5.66835 5.72122 6.54020 6.65842 6.67934 6.99252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.387 4.387 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.328 2.672 6 C -0.517 4.517 7 C -0.524 4.524 8 O -0.634 6.634 9 C 0.085 3.915 10 C -0.111 4.111 11 C 0.099 3.901 12 N -0.647 5.647 13 C 0.576 3.424 14 O -0.576 6.576 15 C -0.176 4.176 16 C -0.058 4.058 17 C -0.142 4.142 18 C -0.073 4.073 19 C -0.089 4.089 20 O -0.552 6.552 21 Si 0.985 3.015 22 H -0.242 1.242 23 H -0.278 1.278 24 H -0.248 1.248 25 C -0.132 4.132 26 C 0.149 3.851 27 O -0.503 6.503 28 C 0.106 3.894 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.104 0.896 47 H 0.121 0.879 48 H 0.094 0.906 49 H 0.160 0.840 50 H 0.152 0.848 51 H 0.128 0.872 52 H 0.390 0.610 53 H 0.142 0.858 54 H 0.409 0.591 55 H 0.075 0.925 56 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 7.501 1.669 7.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.429 4.429 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.457 2.543 6 C -0.619 4.619 7 C -0.625 4.625 8 O -0.594 6.594 9 C 0.009 3.991 10 C -0.130 4.130 11 C -0.022 4.022 12 N -0.382 5.382 13 C 0.368 3.632 14 O -0.456 6.456 15 C -0.179 4.179 16 C -0.076 4.076 17 C -0.160 4.160 18 C -0.074 4.074 19 C -0.199 4.199 20 O -0.359 6.359 21 Si 0.808 3.192 22 H -0.165 1.165 23 H -0.204 1.204 24 H -0.171 1.171 25 C -0.150 4.150 26 C 0.103 3.897 27 O -0.316 6.316 28 C -0.015 4.015 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.123 0.877 47 H 0.138 0.862 48 H 0.112 0.888 49 H 0.178 0.822 50 H 0.169 0.831 51 H 0.146 0.854 52 H 0.240 0.760 53 H 0.160 0.840 54 H 0.269 0.731 55 H 0.094 0.906 56 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.645 7.123 1.642 7.493 hybrid contribution 0.918 -0.158 -0.030 0.932 sum -0.727 6.965 1.612 7.186 Atomic orbital electron populations 1.21540 0.94084 1.01977 1.01748 1.26017 1.00576 1.02835 1.13463 1.21606 1.01136 0.95020 1.02119 1.21545 1.00856 1.00130 0.96936 0.75967 0.61858 0.52770 0.63742 1.27084 1.07158 1.09633 1.18046 1.27198 1.26084 1.04744 1.04500 1.85350 1.79434 1.46342 1.48230 1.22168 0.99406 0.89907 0.87605 1.23117 0.95290 0.95066 0.99513 1.23837 0.98302 0.82946 0.97118 1.50022 1.11443 1.14187 1.62513 1.18011 0.87434 0.81469 0.76311 1.90757 1.66420 1.38408 1.50063 1.20400 0.92713 0.95099 1.09722 1.21539 0.93422 0.97782 0.94888 1.21249 0.94966 0.97553 1.02212 1.20599 0.97108 0.92765 0.96920 1.25265 0.91077 1.12386 0.91142 1.86512 1.79446 1.54270 1.15697 0.85175 0.78532 0.73605 0.81891 1.16525 1.20358 1.17147 1.21338 0.91462 1.00402 1.01818 1.18746 0.89729 0.85497 0.95719 1.84654 1.71665 1.39149 1.36159 1.23404 0.83826 0.95194 0.99090 0.91838 0.93835 0.92094 0.92084 0.93476 0.91675 0.92321 0.93729 0.92390 0.90591 0.90812 0.90689 0.91508 0.90819 0.90811 0.89762 0.90648 0.87741 0.86159 0.88795 0.82224 0.83092 0.85384 0.76021 0.84010 0.73058 0.90616 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.36 7.85 71.98 0.56 0.93 16 2 C -0.39 1.21 0.53 -10.79 -0.01 1.21 16 3 C -0.14 0.44 7.85 71.98 0.56 1.00 16 4 C -0.14 0.18 7.85 71.98 0.56 0.74 16 5 Si 1.33 -8.65 8.45 68.60 0.58 -8.07 16 6 C -0.52 3.52 8.50 113.37 0.96 4.48 16 7 C -0.52 2.45 8.50 113.37 0.96 3.42 16 8 O -0.63 3.44 8.56 -148.98 -1.28 2.16 16 9 C 0.08 -0.73 4.96 71.98 0.36 -0.37 16 10 C -0.11 0.67 4.19 -10.13 -0.04 0.62 16 11 C 0.10 -0.63 5.85 86.44 0.51 -0.12 16 12 N -0.65 -0.98 3.58 -839.64 -3.00 -3.99 16 13 C 0.58 5.19 7.76 86.70 0.67 5.87 16 14 O -0.58 -9.82 16.31 15.27 0.25 -9.57 16 15 C -0.18 -0.92 5.83 -20.01 -0.12 -1.04 16 16 C -0.06 0.09 8.82 22.52 0.20 0.29 16 17 C -0.14 0.45 8.64 22.24 0.19 0.64 16 18 C -0.07 0.09 5.39 -19.83 -0.11 -0.02 16 19 C -0.09 0.31 2.81 71.24 0.20 0.51 16 20 O -0.55 0.63 12.76 -148.98 -1.90 -1.27 16 21 Si 0.99 -4.83 25.05 68.60 1.72 -3.12 16 22 H -0.24 1.43 7.11 99.48 0.71 2.14 16 23 H -0.28 0.11 7.11 99.48 0.71 0.81 16 24 H -0.25 1.23 7.11 99.48 0.71 1.93 16 25 C -0.13 -0.35 9.53 22.34 0.21 -0.14 16 26 C 0.15 0.99 6.69 22.84 0.15 1.14 16 27 O -0.50 -4.65 11.89 -70.41 -0.84 -5.48 16 28 C 0.11 -0.32 8.41 86.48 0.73 0.40 16 29 H 0.06 -0.29 7.79 -2.39 -0.02 -0.31 16 30 H 0.04 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 -0.17 7.97 -2.38 -0.02 -0.19 16 32 H 0.06 -0.25 7.79 -2.39 -0.02 -0.27 16 33 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.06 -0.32 7.79 -2.39 -0.02 -0.34 16 35 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 36 H 0.04 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 38 H 0.07 -0.63 7.48 -2.39 -0.02 -0.65 16 39 H 0.07 -0.45 7.79 -2.39 -0.02 -0.47 16 40 H 0.07 -0.51 7.79 -2.38 -0.02 -0.53 16 41 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 42 H 0.07 -0.33 7.79 -2.38 -0.02 -0.35 16 43 H 0.07 -0.44 7.48 -2.39 -0.02 -0.46 16 44 H 0.08 -1.09 6.95 -2.39 -0.02 -1.11 16 45 H 0.08 -0.80 7.21 -2.39 -0.02 -0.82 16 46 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 47 H 0.12 -1.46 7.53 -2.39 -0.02 -1.48 16 48 H 0.09 -0.63 7.86 -2.39 -0.02 -0.65 16 49 H 0.16 -1.15 5.54 -2.91 -0.02 -1.17 16 50 H 0.15 -1.18 4.85 -2.91 -0.01 -1.19 16 51 H 0.13 -0.63 7.96 -2.39 -0.02 -0.65 16 52 H 0.39 -2.95 8.70 -74.06 -0.64 -3.59 16 53 H 0.14 0.29 8.06 -2.91 -0.02 0.27 16 54 H 0.41 1.22 9.05 -74.06 -0.67 0.55 16 55 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 56 H 0.11 -0.86 8.10 -2.39 -0.02 -0.88 16 Total: 0.00 -22.61 443.61 2.42 -20.19 By element: Atomic # 1 Polarization: -10.74 SS G_CDS: 0.32 Total: -10.42 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 6.57 Total: 19.56 kcal Atomic # 7 Polarization: -0.98 SS G_CDS: -3.00 Total: -3.99 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -3.76 Total: -14.16 kcal Atomic # 14 Polarization: -13.48 SS G_CDS: 2.30 Total: -11.18 kcal Total: -22.61 2.42 -20.19 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_13422076.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.681 kcal (2) G-P(sol) polarization free energy of solvation -22.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds