Wall clock time and date at job start Sun Mar 7 2021 00:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47087 * 2 1 4 4 C 1.53008 * 109.46679 * 240.00336 * 2 1 3 5 5 Si 1.86299 * 109.47052 * 120.00331 * 2 1 3 6 6 C 1.86297 * 109.46957 * 299.99937 * 5 2 1 7 7 C 1.86302 * 109.47020 * 180.02562 * 5 2 1 8 8 O 1.63097 * 109.47179 * 60.00054 * 5 2 1 9 9 C 1.42900 * 113.99876 * 179.97438 * 8 5 2 10 10 C 1.53003 * 109.47256 * 179.97438 * 9 8 5 11 11 C 1.53499 * 114.20775 * 185.00026 * 10 9 8 12 12 N 1.47067 * 87.98465 * 220.34606 * 11 10 9 13 13 C 1.34771 * 136.05736 * 207.08467 * 12 11 10 14 14 O 1.21610 * 119.99999 * 0.02562 * 13 12 11 15 15 C 1.47375 * 120.00141 * 180.02562 * 13 12 11 16 16 C 1.36422 * 127.19279 * 0.12496 * 15 13 12 17 17 O 1.33647 * 108.39811 * 180.26637 * 16 15 13 18 18 C 1.34221 * 110.90928 * 359.75100 * 17 16 15 19 19 C 1.50699 * 125.43737 * 179.97438 * 18 17 16 20 20 O 1.42907 * 109.46900 * 245.04349 * 19 18 17 21 21 Si 1.86299 * 109.47437 * 5.04277 * 19 18 17 22 22 H 1.48501 * 109.46806 * 59.99589 * 21 19 18 23 23 H 1.48497 * 109.47227 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47038 * 300.00034 * 21 19 18 25 25 C 1.34179 * 109.12156 * 0.02562 * 18 17 16 26 26 C 1.47071 * 87.88527 * 27.34029 * 12 11 10 27 27 H 1.09000 * 109.47192 * 299.99840 * 1 2 3 28 28 H 1.09000 * 109.47568 * 59.99790 * 1 2 3 29 29 H 1.09004 * 109.47210 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47332 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47593 * 299.99937 * 3 2 1 32 32 H 1.09000 * 109.46974 * 60.00026 * 3 2 1 33 33 H 1.08995 * 109.46806 * 299.99327 * 4 2 1 34 34 H 1.08994 * 109.47377 * 60.00082 * 4 2 1 35 35 H 1.09000 * 109.46710 * 180.02562 * 4 2 1 36 36 H 1.09001 * 109.47297 * 180.02562 * 6 5 2 37 37 H 1.09004 * 109.47019 * 300.00061 * 6 5 2 38 38 H 1.08991 * 109.47352 * 60.00157 * 6 5 2 39 39 H 1.08999 * 109.46608 * 299.99873 * 7 5 2 40 40 H 1.08995 * 109.47055 * 59.99198 * 7 5 2 41 41 H 1.08994 * 109.47117 * 179.97438 * 7 5 2 42 42 H 1.09007 * 109.46950 * 59.99661 * 9 8 5 43 43 H 1.08993 * 109.47126 * 300.00238 * 9 8 5 44 44 H 1.09003 * 113.27646 * 318.06790 * 10 9 8 45 45 H 1.08996 * 113.46389 * 105.56734 * 11 10 9 46 46 H 1.08996 * 113.46436 * 335.12957 * 11 10 9 47 47 H 1.07999 * 125.79658 * 0.02562 * 16 15 13 48 48 H 1.08995 * 109.47038 * 125.04708 * 19 18 17 49 49 H 0.96699 * 114.00177 * 60.00425 * 20 19 18 50 50 H 1.08002 * 127.01820 * 179.97438 * 25 18 17 51 51 H 1.09005 * 113.46215 * 87.43717 * 26 12 11 52 52 H 1.08998 * 113.47072 * 217.87589 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 -0.0001 3.0422 7 6 4.0140 -0.8776 1.5215 8 8 1.6073 -2.4160 1.5210 9 6 2.0295 -3.1818 2.6512 10 6 1.4636 -4.5995 2.5469 11 6 1.7506 -5.4832 3.7687 12 7 2.0029 -6.5953 2.8401 13 6 1.9188 -7.9395 2.8902 14 8 1.5519 -8.4881 3.9116 15 6 2.2715 -8.7445 1.7072 16 6 2.6996 -8.2862 0.4956 17 8 2.9054 -9.3371 -0.3041 18 6 2.6339 -10.4858 0.3349 19 6 2.7540 -11.8656 -0.2591 20 8 1.4593 -12.4657 -0.3350 21 14 3.4835 -11.7443 -1.9690 22 1 4.8288 -11.1205 -1.8901 23 1 3.6011 -13.1039 -2.5545 24 1 2.6013 -10.9117 -2.8256 25 6 2.2376 -10.2094 1.5867 26 6 2.3935 -5.5955 1.8348 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.1299 -0.7216 -1.2492 36 1 1.8936 -0.5137 3.9322 37 1 1.8933 1.0276 3.0422 38 1 0.4401 -0.0001 3.0422 39 1 4.3776 -1.3912 0.6314 40 1 4.3769 0.1501 1.5216 41 1 4.3773 -1.3911 2.4116 42 1 1.6654 -2.7119 3.5650 43 1 3.1183 -3.2256 2.6743 44 1 0.4274 -4.6259 2.2096 45 1 0.8801 -5.6388 4.4059 46 1 2.6340 -5.1762 4.3286 47 1 2.8436 -7.2501 0.2271 48 1 3.4014 -12.4767 0.3697 49 1 0.8293 -11.9744 -0.8798 50 1 1.9488 -10.9181 2.3488 51 1 3.4465 -5.3182 1.8849 52 1 2.0709 -5.8467 0.8244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14186584_13456056.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:21:43 Heat of formation + Delta-G solvation = -107.584532 kcal Electronic energy + Delta-G solvation = -29715.537904 eV Core-core repulsion = 25613.797674 eV Total energy + Delta-G solvation = -4101.740231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.182 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.72485 -41.51810 -39.05628 -38.04056 -37.59292 -36.91547 -34.00030 -32.36556 -31.21814 -29.53102 -29.18350 -27.94723 -27.55874 -27.46945 -27.27933 -26.39665 -24.13833 -22.25020 -21.63198 -20.51546 -20.27995 -18.95121 -18.01355 -17.88942 -17.60059 -17.48193 -17.19118 -16.77532 -16.30763 -15.99098 -15.85517 -15.75096 -15.21511 -14.96004 -14.86657 -14.84468 -14.51689 -14.15236 -14.04977 -13.97490 -13.82648 -13.80656 -13.59947 -13.51961 -13.36562 -13.29056 -13.01849 -13.01218 -12.90483 -12.65180 -12.49156 -12.22557 -12.16979 -12.07713 -11.79281 -11.77412 -11.50942 -11.46905 -10.96064 -10.86376 -10.64050 -10.46897 -10.16201 -9.88221 -9.77171 0.23666 0.88930 0.99815 1.27977 1.37504 1.42807 1.62385 1.66937 1.74844 1.87642 1.94630 2.29805 2.36712 3.02353 3.16205 3.30417 3.46832 3.67557 3.76107 3.84234 4.03447 4.04019 4.04896 4.12114 4.16566 4.23203 4.25312 4.35691 4.38652 4.39969 4.53485 4.57595 4.59693 4.60953 4.63194 4.64416 4.68576 4.73476 4.77611 4.86877 4.91931 5.00135 5.02571 5.03107 5.11351 5.25576 5.26280 5.30293 5.33458 5.41230 5.45262 5.51090 5.84028 6.35493 6.58172 7.14795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.290 2.710 6 C -0.513 4.513 7 C -0.512 4.512 8 O -0.622 6.622 9 C 0.095 3.905 10 C -0.121 4.121 11 C 0.111 3.889 12 N -0.648 5.648 13 C 0.618 3.382 14 O -0.529 6.529 15 C -0.231 4.231 16 C 0.028 3.972 17 O -0.171 6.171 18 C -0.061 4.061 19 C -0.041 4.041 20 O -0.529 6.529 21 Si 0.960 3.040 22 H -0.247 1.247 23 H -0.245 1.245 24 H -0.248 1.248 25 C -0.120 4.120 26 C 0.094 3.906 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.121 0.879 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.215 0.785 48 H 0.137 0.863 49 H 0.381 0.619 50 H 0.164 0.836 51 H 0.093 0.907 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.062 4.430 -2.831 5.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.419 4.419 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.421 2.579 6 C -0.615 4.615 7 C -0.614 4.614 8 O -0.581 6.581 9 C 0.019 3.981 10 C -0.140 4.140 11 C -0.012 4.012 12 N -0.384 5.384 13 C 0.409 3.591 14 O -0.406 6.406 15 C -0.236 4.236 16 C -0.043 4.043 17 O -0.068 6.068 18 C -0.109 4.109 19 C -0.151 4.151 20 O -0.334 6.334 21 Si 0.780 3.220 22 H -0.170 1.170 23 H -0.168 1.168 24 H -0.171 1.171 25 C -0.140 4.140 26 C -0.029 4.029 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.139 0.861 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.231 0.769 48 H 0.155 0.845 49 H 0.229 0.771 50 H 0.182 0.818 51 H 0.111 0.889 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.418 3.272 -3.146 5.143 hybrid contribution -0.178 1.143 0.502 1.261 sum 2.240 4.416 -2.644 5.613 Atomic orbital electron populations 1.21514 0.93791 1.02010 1.01826 1.25802 1.00702 1.02653 1.12736 1.21558 1.00767 0.94932 1.02187 1.21511 1.00569 1.00217 0.96801 0.76659 0.62937 0.53388 0.64927 1.27051 1.07082 1.09559 1.17764 1.27045 1.25070 1.04846 1.04421 1.85362 1.79271 1.46023 1.47491 1.21916 0.98018 0.90653 0.87543 1.23134 1.01770 0.92174 0.96875 1.22983 1.02190 0.82233 0.93748 1.49336 1.67634 1.03360 1.18052 1.16704 0.76972 0.78854 0.86550 1.90833 1.47336 1.70066 1.32336 1.21416 1.12370 0.94562 0.95228 1.24834 0.98764 0.91864 0.88798 1.83700 1.67813 1.14032 1.41209 1.22794 1.07416 0.87528 0.93153 1.24427 0.91097 0.86763 1.12828 1.86588 1.21361 1.50969 1.74478 0.85493 0.80925 0.81492 0.74128 1.17047 1.16822 1.17124 1.22536 1.01700 0.93183 0.96536 1.23422 0.99846 0.85430 0.94233 0.92694 0.92819 0.92139 0.92520 0.92503 0.92506 0.92158 0.92817 0.92717 0.91442 0.90718 0.90821 0.90854 0.90685 0.91472 0.91630 0.91974 0.86134 0.89489 0.89215 0.76898 0.84522 0.77089 0.81821 0.88866 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.15 7.85 37.16 0.29 0.44 16 2 C -0.38 0.62 0.53 -90.62 -0.05 0.57 16 3 C -0.14 0.22 7.85 37.15 0.29 0.52 16 4 C -0.13 0.19 7.85 37.16 0.29 0.48 16 5 Si 1.29 -3.71 8.45 -169.99 -1.44 -5.14 16 6 C -0.51 1.09 8.50 101.05 0.86 1.94 16 7 C -0.51 1.28 8.50 101.05 0.86 2.14 16 8 O -0.62 1.47 8.56 -35.23 -0.30 1.16 16 9 C 0.09 -0.36 5.04 37.16 0.19 -0.17 16 10 C -0.12 0.38 4.38 -89.97 -0.39 -0.01 16 11 C 0.11 -0.19 8.19 -8.50 -0.07 -0.26 16 12 N -0.65 -0.31 3.69 -186.34 -0.69 -1.00 16 13 C 0.62 2.50 8.06 -12.54 -0.10 2.40 16 14 O -0.53 -4.34 17.76 5.27 0.09 -4.24 16 15 C -0.23 -0.56 6.31 -103.28 -0.65 -1.21 16 16 C 0.03 -0.01 11.29 30.08 0.34 0.33 16 17 O -0.17 -0.12 8.90 7.65 0.07 -0.05 16 18 C -0.06 -0.06 6.18 -35.74 -0.22 -0.28 16 19 C -0.04 0.03 2.97 36.01 0.11 0.14 16 20 O -0.53 0.09 12.88 -35.23 -0.45 -0.36 16 21 Si 0.96 -1.00 27.38 -169.99 -4.65 -5.65 16 22 H -0.25 0.01 7.11 56.52 0.40 0.41 16 23 H -0.25 0.03 7.11 56.52 0.40 0.44 16 24 H -0.25 0.09 7.11 56.52 0.40 0.49 16 25 C -0.12 -0.30 10.90 -37.45 -0.41 -0.71 16 26 C 0.09 -0.30 6.73 -8.36 -0.06 -0.35 16 27 H 0.05 -0.08 7.79 -51.93 -0.40 -0.49 16 28 H 0.05 -0.03 8.14 -51.93 -0.42 -0.46 16 29 H 0.06 -0.06 7.97 -51.93 -0.41 -0.48 16 30 H 0.06 -0.13 7.79 -51.93 -0.40 -0.53 16 31 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.06 -0.12 7.79 -51.93 -0.40 -0.53 16 33 H 0.06 -0.09 7.96 -51.93 -0.41 -0.50 16 34 H 0.05 -0.04 8.14 -51.93 -0.42 -0.47 16 35 H 0.05 -0.11 7.79 -51.93 -0.40 -0.51 16 36 H 0.07 -0.17 7.48 -51.93 -0.39 -0.56 16 37 H 0.07 -0.15 7.79 -51.93 -0.40 -0.56 16 38 H 0.07 -0.12 7.79 -51.93 -0.40 -0.53 16 39 H 0.07 -0.17 7.79 -51.93 -0.40 -0.58 16 40 H 0.07 -0.17 7.79 -51.93 -0.40 -0.58 16 41 H 0.07 -0.20 7.48 -51.93 -0.39 -0.59 16 42 H 0.07 -0.31 7.21 -51.93 -0.37 -0.69 16 43 H 0.06 -0.33 6.87 -51.93 -0.36 -0.68 16 44 H 0.12 -0.31 8.14 -51.93 -0.42 -0.73 16 45 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 46 H 0.09 -0.29 8.10 -51.93 -0.42 -0.71 16 47 H 0.21 -0.83 5.21 -52.49 -0.27 -1.11 16 48 H 0.14 -0.30 7.96 -51.93 -0.41 -0.71 16 49 H 0.38 -1.29 8.70 45.56 0.40 -0.89 16 50 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 51 H 0.09 -0.45 7.87 -51.93 -0.41 -0.86 16 52 H 0.08 -0.37 6.20 -51.93 -0.32 -0.69 16 LS Contribution 420.17 15.07 6.33 6.33 Total: 0.00 -8.94 420.17 -8.11 -17.05 By element: Atomic # 1 Polarization: -5.72 SS G_CDS: -8.35 Total: -14.07 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 1.28 Total: 5.97 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -0.69 Total: -1.00 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -0.59 Total: -3.49 kcal Atomic # 14 Polarization: -4.70 SS G_CDS: -6.09 Total: -10.79 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -8.94 -8.11 -17.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_13456056.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.530 kcal (2) G-P(sol) polarization free energy of solvation -8.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds