Wall clock time and date at job start Sun Mar 7 2021 00:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47087 * 2 1 4 4 C 1.53008 * 109.46679 * 240.00336 * 2 1 3 5 5 Si 1.86299 * 109.47052 * 120.00331 * 2 1 3 6 6 C 1.86297 * 109.46957 * 299.99937 * 5 2 1 7 7 C 1.86302 * 109.47020 * 180.02562 * 5 2 1 8 8 O 1.63097 * 109.47179 * 60.00054 * 5 2 1 9 9 C 1.42900 * 113.99876 * 179.97438 * 8 5 2 10 10 C 1.53003 * 109.47256 * 179.97438 * 9 8 5 11 11 C 1.53499 * 114.20775 * 185.00026 * 10 9 8 12 12 N 1.47067 * 87.98465 * 220.34606 * 11 10 9 13 13 C 1.34771 * 136.05736 * 207.08467 * 12 11 10 14 14 O 1.21610 * 119.99999 * 0.02562 * 13 12 11 15 15 C 1.47375 * 120.00141 * 180.02562 * 13 12 11 16 16 C 1.36422 * 127.19279 * 0.12496 * 15 13 12 17 17 O 1.33647 * 108.39811 * 180.26637 * 16 15 13 18 18 C 1.34221 * 110.90928 * 359.75100 * 17 16 15 19 19 C 1.50699 * 125.43737 * 179.97438 * 18 17 16 20 20 O 1.42907 * 109.46900 * 245.04349 * 19 18 17 21 21 Si 1.86299 * 109.47437 * 5.04277 * 19 18 17 22 22 H 1.48501 * 109.46806 * 59.99589 * 21 19 18 23 23 H 1.48497 * 109.47227 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47038 * 300.00034 * 21 19 18 25 25 C 1.34179 * 109.12156 * 0.02562 * 18 17 16 26 26 C 1.47071 * 87.88527 * 27.34029 * 12 11 10 27 27 H 1.09000 * 109.47192 * 299.99840 * 1 2 3 28 28 H 1.09000 * 109.47568 * 59.99790 * 1 2 3 29 29 H 1.09004 * 109.47210 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47332 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47593 * 299.99937 * 3 2 1 32 32 H 1.09000 * 109.46974 * 60.00026 * 3 2 1 33 33 H 1.08995 * 109.46806 * 299.99327 * 4 2 1 34 34 H 1.08994 * 109.47377 * 60.00082 * 4 2 1 35 35 H 1.09000 * 109.46710 * 180.02562 * 4 2 1 36 36 H 1.09001 * 109.47297 * 180.02562 * 6 5 2 37 37 H 1.09004 * 109.47019 * 300.00061 * 6 5 2 38 38 H 1.08991 * 109.47352 * 60.00157 * 6 5 2 39 39 H 1.08999 * 109.46608 * 299.99873 * 7 5 2 40 40 H 1.08995 * 109.47055 * 59.99198 * 7 5 2 41 41 H 1.08994 * 109.47117 * 179.97438 * 7 5 2 42 42 H 1.09007 * 109.46950 * 59.99661 * 9 8 5 43 43 H 1.08993 * 109.47126 * 300.00238 * 9 8 5 44 44 H 1.09003 * 113.27646 * 318.06790 * 10 9 8 45 45 H 1.08996 * 113.46389 * 105.56734 * 11 10 9 46 46 H 1.08996 * 113.46436 * 335.12957 * 11 10 9 47 47 H 1.07999 * 125.79658 * 0.02562 * 16 15 13 48 48 H 1.08995 * 109.47038 * 125.04708 * 19 18 17 49 49 H 0.96699 * 114.00177 * 60.00425 * 20 19 18 50 50 H 1.08002 * 127.01820 * 179.97438 * 25 18 17 51 51 H 1.09005 * 113.46215 * 87.43717 * 26 12 11 52 52 H 1.08998 * 113.47072 * 217.87589 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 -0.0001 3.0422 7 6 4.0140 -0.8776 1.5215 8 8 1.6073 -2.4160 1.5210 9 6 2.0295 -3.1818 2.6512 10 6 1.4636 -4.5995 2.5469 11 6 1.7506 -5.4832 3.7687 12 7 2.0029 -6.5953 2.8401 13 6 1.9188 -7.9395 2.8902 14 8 1.5519 -8.4881 3.9116 15 6 2.2715 -8.7445 1.7072 16 6 2.6996 -8.2862 0.4956 17 8 2.9054 -9.3371 -0.3041 18 6 2.6339 -10.4858 0.3349 19 6 2.7540 -11.8656 -0.2591 20 8 1.4593 -12.4657 -0.3350 21 14 3.4835 -11.7443 -1.9690 22 1 4.8288 -11.1205 -1.8901 23 1 3.6011 -13.1039 -2.5545 24 1 2.6013 -10.9117 -2.8256 25 6 2.2376 -10.2094 1.5867 26 6 2.3935 -5.5955 1.8348 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.1299 -0.7216 -1.2492 36 1 1.8936 -0.5137 3.9322 37 1 1.8933 1.0276 3.0422 38 1 0.4401 -0.0001 3.0422 39 1 4.3776 -1.3912 0.6314 40 1 4.3769 0.1501 1.5216 41 1 4.3773 -1.3911 2.4116 42 1 1.6654 -2.7119 3.5650 43 1 3.1183 -3.2256 2.6743 44 1 0.4274 -4.6259 2.2096 45 1 0.8801 -5.6388 4.4059 46 1 2.6340 -5.1762 4.3286 47 1 2.8436 -7.2501 0.2271 48 1 3.4014 -12.4767 0.3697 49 1 0.8293 -11.9744 -0.8798 50 1 1.9488 -10.9181 2.3488 51 1 3.4465 -5.3182 1.8849 52 1 2.0709 -5.8467 0.8244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_13456056.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:21:43 Heat of formation + Delta-G solvation = -104.787385 kcal Electronic energy + Delta-G solvation = -29715.416611 eV Core-core repulsion = 25613.797674 eV Total energy + Delta-G solvation = -4101.618937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.182 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.78230 -41.46636 -39.18303 -37.99964 -37.41886 -36.76631 -34.11055 -32.38827 -31.16107 -29.31175 -28.98984 -27.79931 -27.44619 -27.31182 -27.12305 -26.34402 -24.13839 -22.30074 -21.48082 -20.36699 -20.24624 -18.94436 -17.97095 -17.73570 -17.63440 -17.47765 -17.07342 -16.77117 -16.19284 -15.84832 -15.82160 -15.67963 -15.26131 -14.84283 -14.79115 -14.72551 -14.39245 -14.15753 -14.07321 -13.88007 -13.74401 -13.58141 -13.42299 -13.31330 -13.24296 -13.09668 -12.89807 -12.88127 -12.84745 -12.45234 -12.34102 -12.17478 -12.04031 -11.95421 -11.64700 -11.62138 -11.44254 -11.24543 -11.01092 -11.00710 -10.60235 -10.22215 -9.99724 -9.94209 -9.76672 0.18481 0.78266 1.06345 1.40776 1.50883 1.52838 1.70361 1.77068 1.87102 1.93110 2.17745 2.20310 2.54269 3.20665 3.26326 3.35878 3.54567 3.75364 3.96573 3.98606 4.16697 4.18059 4.18146 4.34482 4.38962 4.44052 4.48011 4.50069 4.51512 4.57756 4.61196 4.74809 4.77435 4.80769 4.84009 4.85428 4.87183 4.87639 4.89236 4.91193 5.05613 5.12587 5.14472 5.15305 5.23013 5.28115 5.40482 5.47196 5.49992 5.61273 5.67473 5.72758 5.78638 6.53821 6.55676 6.97309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.388 4.388 3 C -0.142 4.142 4 C -0.136 4.136 5 Si 1.331 2.669 6 C -0.525 4.525 7 C -0.519 4.519 8 O -0.632 6.632 9 C 0.086 3.914 10 C -0.108 4.108 11 C 0.101 3.899 12 N -0.650 5.650 13 C 0.609 3.391 14 O -0.591 6.591 15 C -0.260 4.260 16 C 0.054 3.946 17 O -0.172 6.172 18 C -0.053 4.053 19 C -0.044 4.044 20 O -0.543 6.543 21 Si 1.003 2.997 22 H -0.259 1.259 23 H -0.258 1.258 24 H -0.255 1.255 25 C -0.148 4.148 26 C 0.090 3.910 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.112 0.888 45 H 0.072 0.928 46 H 0.110 0.890 47 H 0.252 0.748 48 H 0.148 0.852 49 H 0.394 0.606 50 H 0.150 0.850 51 H 0.121 0.879 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.326 5.420 -3.786 7.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.429 4.429 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.460 2.540 6 C -0.626 4.626 7 C -0.621 4.621 8 O -0.592 6.592 9 C 0.010 3.990 10 C -0.127 4.127 11 C -0.020 4.020 12 N -0.384 5.384 13 C 0.402 3.598 14 O -0.473 6.473 15 C -0.265 4.265 16 C -0.016 4.016 17 O -0.068 6.068 18 C -0.101 4.101 19 C -0.153 4.153 20 O -0.350 6.350 21 Si 0.824 3.176 22 H -0.182 1.182 23 H -0.182 1.182 24 H -0.179 1.179 25 C -0.168 4.168 26 C -0.031 4.031 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.130 0.870 45 H 0.091 0.909 46 H 0.128 0.872 47 H 0.267 0.733 48 H 0.165 0.835 49 H 0.244 0.756 50 H 0.168 0.832 51 H 0.139 0.861 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.670 4.327 -4.132 7.019 hybrid contribution -0.605 0.918 0.784 1.350 sum 3.064 5.245 -3.348 6.936 Atomic orbital electron populations 1.21546 0.94537 1.01859 1.01524 1.26025 1.00188 1.02897 1.13812 1.21609 1.01316 0.95061 1.01929 1.21542 1.01096 1.00209 0.96512 0.75905 0.62416 0.52603 0.63119 1.27210 1.06775 1.09822 1.18810 1.27104 1.25088 1.04935 1.04926 1.85343 1.79589 1.46247 1.48013 1.22112 0.99397 0.89871 0.87580 1.22967 1.01517 0.92574 0.95649 1.23234 1.02646 0.81837 0.94330 1.49464 1.66137 1.02818 1.19979 1.16994 0.76554 0.80022 0.86249 1.90782 1.50546 1.71542 1.34407 1.21434 1.14513 0.94499 0.96028 1.25428 0.95973 0.92848 0.87334 1.83731 1.67619 1.14183 1.41228 1.22991 1.06390 0.88194 0.92527 1.24645 0.91110 0.86018 1.13533 1.86559 1.21936 1.51529 1.75015 0.84881 0.79664 0.80179 0.72905 1.18247 1.18190 1.17852 1.22581 1.03298 0.93668 0.97220 1.23784 1.01445 0.83663 0.94248 0.92404 0.93774 0.92184 0.91725 0.93508 0.92093 0.91945 0.93878 0.91906 0.90819 0.90880 0.91454 0.90699 0.90889 0.90618 0.90585 0.89730 0.86953 0.90925 0.87212 0.73256 0.83496 0.75642 0.83205 0.86136 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.27 7.85 71.98 0.56 0.83 16 2 C -0.39 1.41 0.53 -10.79 -0.01 1.41 16 3 C -0.14 0.47 7.85 71.98 0.56 1.04 16 4 C -0.14 0.44 7.85 71.98 0.56 1.00 16 5 Si 1.33 -9.46 8.45 68.60 0.58 -8.88 16 6 C -0.53 2.68 8.50 113.37 0.96 3.64 16 7 C -0.52 3.66 8.50 113.37 0.96 4.62 16 8 O -0.63 4.14 8.56 -148.98 -1.28 2.87 16 9 C 0.09 -0.83 5.04 71.98 0.36 -0.47 16 10 C -0.11 0.83 4.38 -10.37 -0.05 0.78 16 11 C 0.10 -0.37 8.19 83.18 0.68 0.31 16 12 N -0.65 -0.56 3.69 -861.70 -3.18 -3.73 16 13 C 0.61 5.85 8.06 86.65 0.70 6.55 16 14 O -0.59 -11.56 17.76 -4.06 -0.07 -11.63 16 15 C -0.26 -1.47 6.31 -18.99 -0.12 -1.59 16 16 C 0.05 -0.09 11.29 67.40 0.76 0.67 16 17 O -0.17 -0.07 8.90 4.45 0.04 -0.03 16 18 C -0.05 -0.11 6.18 24.76 0.15 0.04 16 19 C -0.04 0.07 2.97 71.24 0.21 0.28 16 20 O -0.54 0.02 12.88 -148.98 -1.92 -1.90 16 21 Si 1.00 -2.60 27.38 68.60 1.88 -0.72 16 22 H -0.26 0.20 7.11 99.48 0.71 0.91 16 23 H -0.26 0.15 7.11 99.48 0.71 0.85 16 24 H -0.25 0.41 7.11 99.48 0.71 1.12 16 25 C -0.15 -1.00 10.90 23.65 0.26 -0.74 16 26 C 0.09 -0.77 6.73 83.27 0.56 -0.21 16 27 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 28 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.06 -0.12 7.97 -2.38 -0.02 -0.14 16 30 H 0.06 -0.33 7.79 -2.39 -0.02 -0.34 16 31 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.06 -0.26 7.79 -2.39 -0.02 -0.28 16 33 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 34 H 0.04 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.06 -0.31 7.79 -2.39 -0.02 -0.33 16 36 H 0.07 -0.47 7.48 -2.39 -0.02 -0.49 16 37 H 0.07 -0.35 7.79 -2.38 -0.02 -0.36 16 38 H 0.07 -0.25 7.79 -2.39 -0.02 -0.27 16 39 H 0.07 -0.52 7.79 -2.39 -0.02 -0.54 16 40 H 0.07 -0.46 7.79 -2.39 -0.02 -0.47 16 41 H 0.07 -0.65 7.48 -2.39 -0.02 -0.66 16 42 H 0.08 -0.87 7.21 -2.38 -0.02 -0.89 16 43 H 0.08 -1.17 6.87 -2.39 -0.02 -1.19 16 44 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 45 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.11 -0.84 8.10 -2.39 -0.02 -0.86 16 47 H 0.25 -2.70 5.21 -2.91 -0.02 -2.71 16 48 H 0.15 -0.61 7.96 -2.39 -0.02 -0.62 16 49 H 0.39 -2.59 8.70 -74.06 -0.64 -3.24 16 50 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 51 H 0.12 -1.61 7.87 -2.38 -0.02 -1.63 16 52 H 0.10 -1.17 6.20 -2.39 -0.01 -1.18 16 Total: 0.00 -23.50 420.17 4.20 -19.30 By element: Atomic # 1 Polarization: -14.46 SS G_CDS: 1.01 Total: -13.44 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 7.14 Total: 18.17 kcal Atomic # 7 Polarization: -0.56 SS G_CDS: -3.18 Total: -3.73 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -3.23 Total: -10.70 kcal Atomic # 14 Polarization: -12.05 SS G_CDS: 2.46 Total: -9.59 kcal Total: -23.50 4.20 -19.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_13456056.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.487 kcal (2) G-P(sol) polarization free energy of solvation -23.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds