Wall clock time and date at job start Sun Mar 7 2021 00:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37870 * 126.46122 * 2 1 4 4 C 1.46676 * 126.23135 * 359.93753 * 3 2 1 5 5 O 1.21700 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99780 * 179.97438 * 4 3 2 7 7 C 1.47585 * 134.49073 * 179.97438 * 6 4 3 8 8 C 1.53947 * 86.11441 * 155.35639 * 7 6 4 9 9 C 1.53006 * 113.73862 * 137.95352 * 8 7 6 10 10 O 1.42902 * 109.46978 * 174.99885 * 9 8 7 11 11 Si 1.63096 * 113.99982 * 179.97438 * 10 9 8 12 12 C 1.86298 * 109.47142 * 299.99883 * 11 10 9 13 13 C 1.86299 * 109.47288 * 60.00145 * 11 10 9 14 14 C 1.86301 * 109.47142 * 179.97438 * 11 10 9 15 15 C 1.53000 * 109.47114 * 59.99823 * 14 11 10 16 16 C 1.52995 * 109.47414 * 180.02562 * 14 11 10 17 17 C 1.53005 * 109.46926 * 299.99955 * 14 11 10 18 18 C 1.47577 * 134.49642 * 359.97438 * 6 4 3 19 19 N 1.37649 * 107.53309 * 180.19069 * 3 2 1 20 20 C 1.35531 * 108.64283 * 359.63398 * 19 3 2 21 21 C 1.50706 * 125.56138 * 180.17879 * 20 19 3 22 22 O 1.42897 * 109.47546 * 300.24988 * 21 20 19 23 23 Si 1.86306 * 109.46920 * 180.24571 * 21 20 19 24 24 H 1.48497 * 109.46992 * 60.00544 * 23 21 20 25 25 H 1.48500 * 109.46893 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47317 * 300.00077 * 23 21 20 27 27 C 1.35445 * 108.87343 * 0.37115 * 20 19 3 28 28 H 1.09001 * 109.47601 * 89.99166 * 1 2 3 29 29 H 1.08996 * 109.47454 * 209.99915 * 1 2 3 30 30 H 1.09008 * 109.46709 * 329.99428 * 1 2 3 31 31 H 1.09000 * 113.77328 * 41.05587 * 7 6 4 32 32 H 1.09003 * 113.87223 * 269.66815 * 7 6 4 33 33 H 1.08995 * 113.74302 * 269.15000 * 8 7 6 34 34 H 1.08995 * 109.46794 * 294.99903 * 9 8 7 35 35 H 1.09000 * 109.47314 * 55.00037 * 9 8 7 36 36 H 1.09000 * 109.47204 * 60.00006 * 12 11 10 37 37 H 1.09001 * 109.46871 * 179.97438 * 12 11 10 38 38 H 1.09002 * 109.47091 * 300.00346 * 12 11 10 39 39 H 1.08997 * 109.47237 * 59.99302 * 13 11 10 40 40 H 1.08991 * 109.47558 * 179.97438 * 13 11 10 41 41 H 1.09000 * 109.46789 * 299.99830 * 13 11 10 42 42 H 1.08994 * 109.47332 * 60.00244 * 15 14 11 43 43 H 1.09000 * 109.46992 * 180.02562 * 15 14 11 44 44 H 1.09001 * 109.47122 * 299.99935 * 15 14 11 45 45 H 1.09002 * 109.47306 * 59.99931 * 16 14 11 46 46 H 1.09000 * 109.47338 * 179.97438 * 16 14 11 47 47 H 1.09001 * 109.47279 * 300.00211 * 16 14 11 48 48 H 1.09001 * 109.47381 * 60.00021 * 17 14 11 49 49 H 1.09000 * 109.47123 * 180.02562 * 17 14 11 50 50 H 1.08998 * 109.47410 * 300.00102 * 17 14 11 51 51 H 1.09003 * 113.76916 * 90.33827 * 18 6 4 52 52 H 1.09004 * 113.76688 * 318.94990 * 18 6 4 53 53 H 0.97003 * 125.67698 * 179.73301 * 19 3 2 54 54 H 1.09004 * 109.47108 * 60.25392 * 21 20 19 55 55 H 0.96703 * 113.99644 * 300.00440 * 22 21 20 56 56 H 1.08010 * 126.06768 * 179.74795 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1088 0.0000 4 6 1.8900 2.5092 -0.0013 5 8 0.7027 2.7766 -0.0030 6 7 2.8039 3.4997 -0.0006 7 6 2.7314 4.9738 -0.0019 8 6 4.1298 4.9387 0.6408 9 6 5.0944 5.9828 0.0746 10 8 6.3190 5.9485 0.8103 11 14 7.4326 7.0231 0.2954 12 6 7.8520 6.6772 -1.4865 13 6 6.7475 8.7488 0.4484 14 6 8.9700 6.8714 1.3366 15 6 9.5328 5.4542 1.2116 16 6 10.0144 7.8799 0.8540 17 6 8.6250 7.1559 2.7999 18 6 4.2789 3.5461 0.0018 19 7 3.6284 0.6623 -0.0044 20 6 3.6217 -0.6930 0.0012 21 6 4.8433 -1.5755 0.0028 22 8 5.6250 -1.3091 -1.1634 23 14 4.3180 -3.3630 0.0034 24 1 3.5080 -3.6412 -1.2097 25 1 5.5217 -4.2326 0.0056 26 1 3.5057 -3.6398 1.2153 27 6 2.3379 -1.1247 0.0007 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 1.9575 5.3763 0.6516 32 1 2.7171 5.4139 -0.9991 33 1 4.1117 4.9238 1.7305 34 1 5.2941 5.7620 -0.9739 35 1 4.6477 6.9735 0.1586 36 1 6.9523 6.7662 -2.0954 37 1 8.5959 7.3957 -1.8307 38 1 8.2527 5.6675 -1.5760 39 1 6.5021 8.9512 1.4909 40 1 7.4918 9.4670 0.1047 41 1 5.8479 8.8379 -0.1605 42 1 9.7786 5.2515 0.1692 43 1 10.4321 5.3653 1.8211 44 1 8.7886 4.7360 1.5557 45 1 9.6132 8.8894 0.9435 46 1 10.9137 7.7914 1.4635 47 1 10.2602 7.6777 -0.1885 48 1 7.8808 6.4377 3.1440 49 1 9.5246 7.0676 3.4090 50 1 8.2240 8.1655 2.8890 51 1 4.7195 3.5650 -0.9951 52 1 4.7406 2.8085 0.6583 53 1 4.4191 1.2242 -0.0090 54 1 5.4379 -1.3713 0.8933 55 1 5.1581 -1.4695 -1.9949 56 1 2.0135 -2.1550 0.0005 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_13940406.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:21:51 Heat of formation + Delta-G solvation = -88.378107 kcal Electronic energy + Delta-G solvation = -32258.934148 eV Core-core repulsion = 28100.207813 eV Total energy + Delta-G solvation = -4158.726334 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.209 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.69436 -41.13342 -39.13027 -37.70067 -37.42969 -36.79349 -33.72693 -32.35431 -31.10709 -29.34610 -29.02148 -28.29695 -27.82593 -27.60474 -27.34903 -27.26693 -25.76780 -22.42625 -21.68269 -21.13128 -20.38610 -20.16420 -18.94725 -18.11447 -17.67122 -17.42419 -17.15548 -16.58136 -16.27526 -15.94810 -15.89000 -15.57982 -15.53206 -14.91853 -14.82415 -14.74699 -14.68149 -14.33967 -14.24755 -13.96653 -13.85428 -13.71330 -13.69176 -13.59847 -13.51271 -13.35323 -13.25871 -13.13160 -12.98597 -12.92319 -12.90623 -12.49152 -12.36975 -12.24616 -12.14510 -12.08940 -11.79838 -11.69584 -11.66774 -11.41150 -11.32058 -10.95994 -10.64603 -10.26222 -10.02523 -9.96923 -9.86786 -9.20109 0.26352 1.09662 1.45922 1.48912 1.57222 1.61281 1.65908 1.83711 1.92165 2.15963 2.17154 2.21059 2.50740 3.22406 3.37986 3.47288 3.57420 3.86632 3.89984 4.05705 4.15203 4.15509 4.16140 4.27994 4.30419 4.37526 4.48413 4.51085 4.52210 4.56109 4.60410 4.65683 4.70626 4.78242 4.80468 4.82423 4.83476 4.83823 4.84898 4.85476 4.86402 5.03027 5.11384 5.11921 5.12610 5.16859 5.24522 5.27738 5.37879 5.44430 5.46980 5.56240 5.61719 5.64545 5.69263 5.81873 6.32387 6.46854 6.59577 6.95030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.087 4.087 3 C -0.067 4.067 4 C 0.604 3.396 5 O -0.568 6.568 6 N -0.653 5.653 7 C 0.108 3.892 8 C -0.104 4.104 9 C 0.084 3.916 10 O -0.634 6.634 11 Si 1.329 2.671 12 C -0.520 4.520 13 C -0.523 4.523 14 C -0.387 4.387 15 C -0.137 4.137 16 C -0.142 4.142 17 C -0.137 4.137 18 C 0.092 3.908 19 N -0.513 5.513 20 C 0.034 3.966 21 C -0.063 4.063 22 O -0.550 6.550 23 Si 1.010 2.990 24 H -0.253 1.253 25 H -0.268 1.268 26 H -0.258 1.258 27 C -0.218 4.218 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.043 0.957 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.044 0.956 50 H 0.058 0.942 51 H 0.114 0.886 52 H 0.087 0.913 53 H 0.426 0.574 54 H 0.134 0.866 55 H 0.392 0.608 56 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.831 0.853 -1.696 5.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.180 4.180 4 C 0.396 3.604 5 O -0.448 6.448 6 N -0.387 5.387 7 C -0.013 4.013 8 C -0.123 4.123 9 C 0.008 3.992 10 O -0.593 6.593 11 Si 1.457 2.543 12 C -0.621 4.621 13 C -0.624 4.624 14 C -0.429 4.429 15 C -0.194 4.194 16 C -0.199 4.199 17 C -0.194 4.194 18 C -0.030 4.030 19 N -0.112 5.112 20 C -0.086 4.086 21 C -0.172 4.172 22 O -0.357 6.357 23 Si 0.832 3.168 24 H -0.176 1.176 25 H -0.193 1.193 26 H -0.182 1.182 27 C -0.242 4.242 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.063 0.937 50 H 0.077 0.923 51 H 0.132 0.868 52 H 0.105 0.895 53 H 0.268 0.732 54 H 0.152 0.848 55 H 0.242 0.758 56 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.345 0.094 -1.064 4.474 hybrid contribution 0.301 1.096 -0.420 1.211 sum 4.646 1.190 -1.484 5.020 Atomic orbital electron populations 1.20332 0.89161 1.02823 1.02356 1.20161 0.96338 0.91221 1.01875 1.20102 0.84601 0.92814 1.20515 1.16876 0.84547 0.83091 0.75896 1.90809 1.17188 1.83569 1.53211 1.49990 1.08261 1.07529 1.72947 1.23406 0.97059 0.78365 1.02475 1.23093 0.93210 0.93832 1.02189 1.22179 0.83165 0.99150 0.94732 1.85348 1.32932 1.74553 1.66500 0.75950 0.58682 0.57630 0.61991 1.27120 1.06062 1.05484 1.23453 1.27173 1.07483 1.23098 1.04676 1.26008 1.13836 0.97963 1.05045 1.21540 1.00693 0.95314 1.01828 1.21608 0.98384 0.98581 1.01323 1.21545 1.01190 1.01596 0.95110 1.23763 0.78621 0.98032 1.02541 1.42143 1.06917 1.06750 1.55427 1.21403 0.97196 0.83567 1.06413 1.24965 0.91274 1.08367 0.92633 1.86485 1.41767 1.91218 1.16215 0.84782 0.78851 0.71678 0.81500 1.17607 1.19289 1.18200 1.20802 0.91278 0.99338 1.12827 0.91326 0.90233 0.92110 0.89873 0.87287 0.87065 0.90124 0.90263 0.90724 0.90757 0.90920 0.91328 0.90765 0.90784 0.92004 0.93749 0.92152 0.91980 0.93419 0.91778 0.92290 0.93688 0.92278 0.86784 0.89481 0.73191 0.84798 0.75788 0.82450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 9.83 71.24 0.70 0.06 16 2 C -0.09 -0.66 6.21 -19.56 -0.12 -0.78 16 3 C -0.07 -0.47 7.01 40.35 0.28 -0.19 16 4 C 0.60 5.70 8.02 86.45 0.69 6.40 16 5 O -0.57 -9.58 15.53 -4.35 -0.07 -9.64 16 6 N -0.65 -1.09 3.61 -841.33 -3.03 -4.13 16 7 C 0.11 -0.36 8.40 86.48 0.73 0.37 16 8 C -0.10 0.66 4.20 -10.13 -0.04 0.62 16 9 C 0.08 -0.70 4.98 71.98 0.36 -0.34 16 10 O -0.63 3.37 8.56 -148.98 -1.28 2.10 16 11 Si 1.33 -8.25 8.45 68.60 0.58 -7.67 16 12 C -0.52 3.03 8.50 113.37 0.96 3.99 16 13 C -0.52 2.48 8.50 113.37 0.96 3.45 16 14 C -0.39 1.13 0.53 -10.79 -0.01 1.12 16 15 C -0.14 0.29 7.85 71.98 0.56 0.86 16 16 C -0.14 0.40 7.85 71.98 0.56 0.97 16 17 C -0.14 0.20 7.85 71.98 0.56 0.76 16 18 C 0.09 -0.53 6.92 86.48 0.60 0.06 16 19 N -0.51 -0.45 5.88 -171.94 -1.01 -1.46 16 20 C 0.03 0.01 6.47 41.34 0.27 0.27 16 21 C -0.06 0.26 3.08 71.24 0.22 0.48 16 22 O -0.55 2.12 12.88 -148.98 -1.92 0.20 16 23 Si 1.01 -3.79 25.83 68.60 1.77 -2.02 16 24 H -0.25 0.74 7.11 99.48 0.71 1.45 16 25 H -0.27 0.28 7.11 99.48 0.71 0.99 16 26 H -0.26 0.47 7.11 99.48 0.71 1.17 16 27 C -0.22 -0.67 9.27 22.01 0.20 -0.46 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.06 0.70 6.49 -2.38 -0.02 0.68 16 31 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.11 -0.77 8.10 -2.39 -0.02 -0.79 16 33 H 0.11 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.08 -0.97 6.91 -2.39 -0.02 -0.98 16 35 H 0.08 -0.86 7.21 -2.39 -0.02 -0.87 16 36 H 0.07 -0.54 7.48 -2.39 -0.02 -0.56 16 37 H 0.07 -0.40 7.79 -2.39 -0.02 -0.42 16 38 H 0.07 -0.39 7.79 -2.39 -0.02 -0.41 16 39 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 40 H 0.07 -0.33 7.79 -2.39 -0.02 -0.35 16 41 H 0.07 -0.45 7.48 -2.39 -0.02 -0.47 16 42 H 0.06 -0.23 7.80 -2.39 -0.02 -0.25 16 43 H 0.04 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.06 -0.14 7.97 -2.39 -0.02 -0.16 16 45 H 0.06 -0.25 7.79 -2.39 -0.02 -0.27 16 46 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.06 -0.28 7.80 -2.39 -0.02 -0.30 16 48 H 0.06 -0.08 7.97 -2.39 -0.02 -0.10 16 49 H 0.04 0.00 8.14 -2.39 -0.02 -0.02 16 50 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 51 H 0.11 -1.11 7.89 -2.39 -0.02 -1.12 16 52 H 0.09 -0.62 6.52 -2.39 -0.02 -0.64 16 53 H 0.43 -1.54 5.78 -92.71 -0.54 -2.08 16 54 H 0.13 -0.91 7.96 -2.38 -0.02 -0.93 16 55 H 0.39 -3.64 8.70 -74.06 -0.64 -4.28 16 56 H 0.16 -0.06 6.17 -2.91 -0.02 -0.08 16 Total: 0.00 -19.29 439.45 2.99 -16.31 By element: Atomic # 1 Polarization: -11.78 SS G_CDS: 0.44 Total: -11.33 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 7.50 Total: 17.64 kcal Atomic # 7 Polarization: -1.54 SS G_CDS: -4.05 Total: -5.58 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -3.26 Total: -7.34 kcal Atomic # 14 Polarization: -12.04 SS G_CDS: 2.35 Total: -9.69 kcal Total: -19.29 2.99 -16.31 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_13940406.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.072 kcal (2) G-P(sol) polarization free energy of solvation -19.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds