Wall clock time and date at job start Sun Mar 7 2021 00:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47523 * 2 1 4 4 C 1.53004 * 109.47038 * 239.99608 * 2 1 3 5 5 Si 1.86306 * 109.47223 * 120.00143 * 2 1 3 6 6 C 1.86302 * 109.46937 * 299.99850 * 5 2 1 7 7 C 1.86302 * 109.47343 * 179.97438 * 5 2 1 8 8 O 1.63102 * 109.47084 * 59.99597 * 5 2 1 9 9 C 1.42896 * 114.00077 * 180.02562 * 8 5 2 10 10 C 1.52997 * 109.47357 * 180.02562 * 9 8 5 11 11 C 1.53497 * 114.20885 * 184.99752 * 10 9 8 12 12 N 1.47062 * 87.98712 * 220.14618 * 11 10 9 13 13 C 1.34776 * 136.05806 * 207.08116 * 12 11 10 14 14 O 1.21282 * 119.99940 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00035 * 179.97438 * 13 12 11 16 16 C 1.50706 * 109.47294 * 180.02562 * 15 13 12 17 17 C 1.34847 * 125.88682 * 85.02354 * 16 15 13 18 18 C 1.40893 * 107.41636 * 180.02562 * 17 16 15 19 19 C 1.34848 * 107.41713 * 0.02562 * 18 17 16 20 20 C 1.50699 * 125.89326 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.47548 * 119.97003 * 20 19 18 22 22 Si 1.86301 * 109.47127 * 359.96757 * 20 19 18 23 23 H 1.48506 * 109.46965 * 60.00123 * 22 20 19 24 24 H 1.48498 * 109.47483 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47340 * 300.00670 * 22 20 19 26 26 N 1.36342 * 125.89137 * 264.71978 * 16 15 13 27 27 C 1.47066 * 87.88308 * 27.34449 * 12 11 10 28 28 H 1.08997 * 109.46544 * 300.00148 * 1 2 3 29 29 H 1.08997 * 109.46706 * 59.99978 * 1 2 3 30 30 H 1.08999 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47320 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47011 * 300.00271 * 3 2 1 33 33 H 1.09003 * 109.47140 * 59.99916 * 3 2 1 34 34 H 1.08994 * 109.47330 * 300.00599 * 4 2 1 35 35 H 1.09000 * 109.46678 * 60.00230 * 4 2 1 36 36 H 1.08997 * 109.47257 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.46938 * 179.97438 * 6 5 2 38 38 H 1.09003 * 109.47018 * 299.99755 * 6 5 2 39 39 H 1.08997 * 109.47261 * 59.99924 * 6 5 2 40 40 H 1.08997 * 109.46742 * 299.99905 * 7 5 2 41 41 H 1.09002 * 109.46616 * 60.00030 * 7 5 2 42 42 H 1.08997 * 109.46827 * 179.97438 * 7 5 2 43 43 H 1.08998 * 109.47181 * 60.00104 * 9 8 5 44 44 H 1.09010 * 109.47317 * 299.99994 * 9 8 5 45 45 H 1.09000 * 113.28439 * 318.06530 * 10 9 8 46 46 H 1.09001 * 113.46658 * 105.36278 * 11 10 9 47 47 H 1.09003 * 113.52292 * 334.94010 * 11 10 9 48 48 H 1.09001 * 109.46665 * 60.00498 * 15 13 12 49 49 H 1.09000 * 109.47722 * 300.00830 * 15 13 12 50 50 H 1.08000 * 126.29260 * 359.97438 * 17 16 15 51 51 H 1.07999 * 126.29161 * 179.97438 * 18 17 16 52 52 H 1.09003 * 109.46655 * 239.97363 * 20 19 18 53 53 H 0.96698 * 114.00188 * 179.97438 * 21 20 19 54 54 H 0.97000 * 125.63933 * 0.02562 * 26 16 15 55 55 H 1.08992 * 113.47105 * 87.44049 * 27 12 11 56 56 H 1.09004 * 113.46537 * 217.87485 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 14 2.1511 -0.8783 1.5211 6 6 1.5301 0.0000 3.0423 7 6 4.0141 -0.8790 1.5208 8 8 1.6073 -2.4160 1.5212 9 6 2.0285 -3.1814 2.6519 10 6 1.4636 -4.5994 2.5470 11 6 1.7497 -5.4829 3.7692 12 7 1.9989 -6.5962 2.8412 13 6 1.9120 -7.9402 2.8923 14 8 1.5458 -8.4859 3.9117 15 6 2.2689 -8.7649 1.6826 16 6 2.0873 -10.2270 1.9999 17 6 0.9321 -10.9172 1.9127 18 6 1.2040 -12.2448 2.2982 19 6 2.5148 -12.3151 2.6068 20 6 3.2484 -13.5469 3.0710 21 8 4.2971 -13.8524 2.1497 22 14 2.0616 -14.9804 3.1585 23 1 1.4826 -15.2265 1.8133 24 1 2.7842 -16.1941 3.6165 25 1 0.9717 -14.6630 4.1159 26 7 3.0637 -11.0812 2.4190 27 6 2.3910 -5.5979 1.8350 28 1 -0.3632 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7218 -1.2490 37 1 1.8930 -0.5141 3.9323 38 1 1.8935 1.0276 3.0423 39 1 0.4401 0.0000 3.0423 40 1 4.3770 -1.3931 0.6308 41 1 4.3777 0.1486 1.5206 42 1 4.3773 -1.3924 2.4110 43 1 1.6637 -2.7113 3.5652 44 1 3.1174 -3.2253 2.6759 45 1 0.4279 -4.6267 2.2085 46 1 0.8794 -5.6362 4.4073 47 1 2.6339 -5.1781 4.3290 48 1 3.3075 -8.5784 1.4093 49 1 1.6196 -8.4905 0.8512 50 1 -0.0256 -10.5243 1.6048 51 1 0.4931 -13.0567 2.3398 52 1 3.6733 -13.3663 4.0584 53 1 4.8129 -14.6354 2.3863 54 1 3.9943 -10.8487 2.5635 55 1 3.4445 -5.3228 1.8839 56 1 2.0670 -5.8493 0.8250 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_14644196.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:22:03 Heat of formation + Delta-G solvation = -83.581213 kcal Electronic energy + Delta-G solvation = -31011.369436 eV Core-core repulsion = 26852.851111 eV Total energy + Delta-G solvation = -4158.518325 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.209 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.36539 -41.35530 -39.19985 -37.68970 -37.38680 -36.76844 -33.40331 -32.00203 -31.59723 -29.51206 -29.23893 -28.99609 -27.79678 -27.31784 -26.93934 -26.69741 -24.79215 -21.99958 -21.40723 -21.19574 -20.36097 -20.03812 -18.50337 -18.21468 -18.05793 -17.59057 -17.15974 -16.72226 -16.24632 -16.01205 -15.86166 -15.58448 -15.13171 -14.94496 -14.80913 -14.73244 -14.66502 -14.45710 -14.32147 -13.95893 -13.84076 -13.65195 -13.55217 -13.47049 -13.35692 -13.31430 -13.26690 -13.10231 -12.90047 -12.88478 -12.86055 -12.54582 -12.42326 -12.34162 -12.02195 -11.93377 -11.89208 -11.63992 -11.61639 -11.33720 -11.22760 -10.86774 -10.46599 -10.22313 -9.99739 -9.85000 -9.75403 -8.98274 1.01772 1.12828 1.47581 1.52459 1.54985 1.58693 1.74607 1.86730 1.95159 2.06098 2.20126 2.42577 2.54270 3.31645 3.42667 3.54600 3.74324 3.94271 3.97844 4.06820 4.16189 4.17942 4.17968 4.34127 4.37378 4.40126 4.45966 4.50810 4.52942 4.56902 4.62057 4.67159 4.74926 4.79458 4.81129 4.82942 4.85859 4.86221 4.87017 4.87944 4.89426 5.05404 5.14282 5.14995 5.18251 5.23616 5.24675 5.29751 5.40227 5.46911 5.50008 5.62040 5.67278 5.71785 5.94611 6.07149 6.61035 6.69885 6.75920 7.08638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.387 4.387 3 C -0.142 4.142 4 C -0.136 4.136 5 Si 1.329 2.671 6 C -0.524 4.524 7 C -0.518 4.518 8 O -0.633 6.633 9 C 0.087 3.913 10 C -0.113 4.113 11 C 0.099 3.901 12 N -0.655 5.655 13 C 0.537 3.463 14 O -0.582 6.582 15 C -0.057 4.057 16 C 0.031 3.969 17 C -0.198 4.198 18 C -0.219 4.219 19 C 0.021 3.979 20 C -0.061 4.061 21 O -0.565 6.565 22 Si 1.006 2.994 23 H -0.271 1.271 24 H -0.244 1.244 25 H -0.268 1.268 26 N -0.533 5.533 27 C 0.103 3.897 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.067 0.933 47 H 0.104 0.896 48 H 0.127 0.873 49 H 0.138 0.862 50 H 0.141 0.859 51 H 0.139 0.861 52 H 0.090 0.910 53 H 0.401 0.599 54 H 0.421 0.579 55 H 0.111 0.889 56 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 3.754 -1.160 6.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.429 4.429 3 C -0.199 4.199 4 C -0.193 4.193 5 Si 1.458 2.542 6 C -0.625 4.625 7 C -0.620 4.620 8 O -0.593 6.593 9 C 0.011 3.989 10 C -0.132 4.132 11 C -0.024 4.024 12 N -0.390 5.390 13 C 0.328 3.672 14 O -0.461 6.461 15 C -0.097 4.097 16 C -0.083 4.083 17 C -0.223 4.223 18 C -0.244 4.244 19 C -0.092 4.092 20 C -0.170 4.170 21 O -0.374 6.374 22 Si 0.828 3.172 23 H -0.195 1.195 24 H -0.168 1.168 25 H -0.192 1.192 26 N -0.129 5.129 27 C -0.019 4.019 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.128 0.872 46 H 0.086 0.914 47 H 0.122 0.878 48 H 0.145 0.855 49 H 0.156 0.844 50 H 0.159 0.841 51 H 0.157 0.843 52 H 0.108 0.892 53 H 0.252 0.748 54 H 0.260 0.740 55 H 0.128 0.872 56 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.843 2.897 -0.999 4.915 hybrid contribution 0.747 0.600 0.470 1.067 sum 4.590 3.497 -0.529 5.794 Atomic orbital electron populations 1.21542 0.94496 1.01849 1.01552 1.26017 1.00230 1.02921 1.13755 1.21608 1.01310 0.95012 1.01964 1.21537 1.01067 1.00178 0.96557 0.75942 0.62413 0.52651 0.63205 1.27194 1.06780 1.09813 1.18714 1.27102 1.25146 1.04918 1.04843 1.85346 1.79603 1.46296 1.48010 1.22094 0.99251 0.90111 0.87430 1.22989 1.01605 0.92603 0.96004 1.23159 1.02182 0.82708 0.94327 1.49694 1.66514 1.03355 1.19422 1.20566 0.76697 0.80342 0.89643 1.90748 1.49077 1.71238 1.35054 1.20118 1.06605 0.86497 0.96471 1.19862 0.89076 0.92281 1.07044 1.20800 0.98015 0.94037 1.09418 1.20836 0.95197 0.98674 1.09665 1.19999 0.93409 0.86673 1.09157 1.24484 0.97041 1.00685 0.94815 1.86438 1.47644 1.52674 1.50648 0.84883 0.77394 0.75108 0.79801 1.19529 1.16757 1.19205 1.41806 1.10974 1.07898 1.52189 1.23505 1.00563 0.83487 0.94343 0.92363 0.93727 0.92230 0.91734 0.93473 0.92042 0.92047 0.93825 0.91951 0.90868 0.90811 0.91432 0.90797 0.90829 0.90688 0.90798 0.90028 0.87198 0.91391 0.87808 0.85526 0.84389 0.84116 0.84283 0.89179 0.74806 0.74047 0.87158 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.18 7.85 71.98 0.56 0.74 16 2 C -0.39 1.13 0.53 -10.79 -0.01 1.12 16 3 C -0.14 0.40 7.85 71.98 0.56 0.96 16 4 C -0.14 0.32 7.85 71.98 0.56 0.88 16 5 Si 1.33 -8.28 8.45 68.60 0.58 -7.70 16 6 C -0.52 2.36 8.50 113.37 0.96 3.32 16 7 C -0.52 3.20 8.50 113.37 0.96 4.16 16 8 O -0.63 3.36 8.56 -148.98 -1.28 2.08 16 9 C 0.09 -0.73 5.04 71.98 0.36 -0.37 16 10 C -0.11 0.76 4.37 -10.37 -0.05 0.72 16 11 C 0.10 -0.33 8.19 83.17 0.68 0.35 16 12 N -0.65 0.33 3.69 -857.86 -3.16 -2.84 16 13 C 0.54 3.01 8.07 87.66 0.71 3.72 16 14 O -0.58 -9.49 16.81 -3.04 -0.05 -9.54 16 15 C -0.06 0.03 6.07 29.10 0.18 0.20 16 16 C 0.03 0.21 5.66 41.08 0.23 0.44 16 17 C -0.20 -1.93 10.76 22.14 0.24 -1.70 16 18 C -0.22 -2.22 9.37 22.14 0.21 -2.01 16 19 C 0.02 0.17 6.54 41.08 0.27 0.44 16 20 C -0.06 -0.11 3.07 71.24 0.22 0.11 16 21 O -0.56 -0.50 12.86 -148.98 -1.92 -2.42 16 22 Si 1.01 1.35 25.87 68.60 1.77 3.13 16 23 H -0.27 -1.43 7.11 99.48 0.71 -0.72 16 24 H -0.24 0.25 7.11 99.48 0.71 0.96 16 25 H -0.27 -1.16 7.11 99.48 0.71 -0.46 16 26 N -0.53 -3.24 6.08 -171.11 -1.04 -4.28 16 27 C 0.10 -0.81 8.00 83.26 0.67 -0.15 16 28 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 29 H 0.04 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 31 H 0.06 -0.29 7.79 -2.39 -0.02 -0.31 16 32 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 34 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 35 H 0.04 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.06 -0.25 7.79 -2.39 -0.02 -0.27 16 37 H 0.07 -0.42 7.48 -2.39 -0.02 -0.44 16 38 H 0.07 -0.32 7.79 -2.39 -0.02 -0.34 16 39 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 40 H 0.07 -0.44 7.79 -2.39 -0.02 -0.46 16 41 H 0.07 -0.41 7.79 -2.39 -0.02 -0.43 16 42 H 0.07 -0.57 7.48 -2.39 -0.02 -0.59 16 43 H 0.07 -0.76 7.21 -2.39 -0.02 -0.78 16 44 H 0.08 -1.01 6.88 -2.38 -0.02 -1.03 16 45 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 46 H 0.07 -0.01 8.14 -2.39 -0.02 -0.02 16 47 H 0.10 -0.71 8.11 -2.39 -0.02 -0.73 16 48 H 0.13 -0.79 8.14 -2.39 -0.02 -0.81 16 49 H 0.14 -0.68 8.14 -2.39 -0.02 -0.70 16 50 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 51 H 0.14 1.09 6.22 -2.91 -0.02 1.08 16 52 H 0.09 -0.17 7.96 -2.39 -0.02 -0.18 16 53 H 0.40 -3.49 8.74 -74.06 -0.65 -4.13 16 54 H 0.42 0.57 8.96 -92.71 -0.83 -0.26 16 55 H 0.11 -1.31 7.88 -2.39 -0.02 -1.33 16 56 H 0.10 -0.98 8.14 -2.38 -0.02 -1.00 16 Total: 0.00 -24.52 448.22 2.37 -22.15 By element: Atomic # 1 Polarization: -13.65 SS G_CDS: 0.13 Total: -13.52 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 7.33 Total: 12.94 kcal Atomic # 7 Polarization: -2.91 SS G_CDS: -4.20 Total: -7.11 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -3.24 Total: -9.88 kcal Atomic # 14 Polarization: -6.93 SS G_CDS: 2.35 Total: -4.57 kcal Total: -24.52 2.37 -22.15 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_14644196.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.434 kcal (2) G-P(sol) polarization free energy of solvation -24.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds