Wall clock time and date at job start Sun Mar 7 2021 00:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47232 * 2 1 4 4 C 1.52998 * 109.46885 * 240.00077 * 2 1 3 5 5 Si 1.86296 * 109.46837 * 120.00085 * 2 1 3 6 6 C 1.86299 * 109.47338 * 299.99843 * 5 2 1 7 7 C 1.86302 * 109.47073 * 179.97438 * 5 2 1 8 8 O 1.63101 * 109.47107 * 60.00134 * 5 2 1 9 9 C 1.42904 * 113.99860 * 179.97438 * 8 5 2 10 10 C 1.53002 * 109.46938 * 179.97438 * 9 8 5 11 11 C 1.53947 * 113.73874 * 174.99950 * 10 9 8 12 12 N 1.47584 * 86.11565 * 137.95347 * 11 10 9 13 13 C 1.34776 * 134.49098 * 155.35611 * 12 11 10 14 14 O 1.21701 * 120.00147 * 0.02562 * 13 12 11 15 15 C 1.46673 * 119.99920 * 179.97438 * 13 12 11 16 16 C 1.37872 * 126.23380 * 179.69007 * 15 13 12 17 17 C 1.39840 * 107.08754 * 179.84988 * 16 15 13 18 18 C 1.35457 * 107.86241 * 0.42045 * 17 16 15 19 19 C 1.50698 * 125.56701 * 179.77755 * 18 17 16 20 20 O 1.42897 * 109.47298 * 119.95490 * 19 18 17 21 21 Si 1.86308 * 109.46812 * 359.95488 * 19 18 17 22 22 H 1.48502 * 109.47154 * 300.00318 * 21 19 18 23 23 H 1.48499 * 109.46976 * 60.00472 * 21 19 18 24 24 H 1.48497 * 109.47052 * 180.02562 * 21 19 18 25 25 N 1.35532 * 108.86933 * 359.73736 * 18 17 16 26 26 C 1.47576 * 91.01498 * 335.35788 * 12 11 10 27 27 H 1.08999 * 109.46834 * 300.00251 * 1 2 3 28 28 H 1.08999 * 109.46612 * 59.99617 * 1 2 3 29 29 H 1.08999 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46726 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47261 * 300.00148 * 3 2 1 32 32 H 1.09001 * 109.47016 * 59.99765 * 3 2 1 33 33 H 1.08999 * 109.47179 * 300.00062 * 4 2 1 34 34 H 1.09002 * 109.47616 * 60.00023 * 4 2 1 35 35 H 1.08997 * 109.47090 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47074 * 180.02562 * 6 5 2 37 37 H 1.09006 * 109.46834 * 299.99848 * 6 5 2 38 38 H 1.08997 * 109.47234 * 59.99780 * 6 5 2 39 39 H 1.09001 * 109.47408 * 300.00065 * 7 5 2 40 40 H 1.08999 * 109.46931 * 60.00061 * 7 5 2 41 41 H 1.09000 * 109.47355 * 180.02562 * 7 5 2 42 42 H 1.09004 * 109.47342 * 59.99809 * 9 8 5 43 43 H 1.08997 * 109.47102 * 299.99639 * 9 8 5 44 44 H 1.08999 * 113.01600 * 43.34083 * 10 9 8 45 45 H 1.09001 * 113.76955 * 252.25382 * 11 10 9 46 46 H 1.08997 * 113.77064 * 23.65458 * 11 10 9 47 47 H 1.08002 * 126.46048 * 359.96958 * 16 15 13 48 48 H 1.08000 * 126.07043 * 180.18369 * 17 16 15 49 49 H 1.08994 * 109.47142 * 239.96141 * 19 18 17 50 50 H 0.96703 * 113.99876 * 180.02562 * 20 19 18 51 51 H 0.97005 * 125.67809 * 180.02562 * 25 18 17 52 52 H 1.09003 * 113.77250 * 270.33779 * 26 12 11 53 53 H 1.09001 * 113.87174 * 138.94936 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8790 1.5208 8 8 1.6073 -2.4160 1.5210 9 6 2.0294 -3.1817 2.6514 10 6 1.4634 -4.5994 2.5470 11 6 1.9578 -5.5471 3.6548 12 7 0.5659 -6.0332 3.7213 13 6 -0.0155 -7.1815 4.1209 14 8 0.6688 -8.0955 4.5424 15 6 -1.4730 -7.3293 4.0490 16 6 -2.1982 -8.4431 4.4158 17 6 -3.5461 -8.1495 4.1865 18 6 -3.6183 -6.8929 3.6859 19 6 -4.8850 -6.1776 3.2924 20 8 -5.0210 -4.9868 4.0705 21 14 -6.3474 -7.2904 3.5991 22 1 -6.2060 -8.5279 2.7905 23 1 -6.4062 -7.6446 5.0400 24 1 -7.5956 -6.5858 3.2108 25 7 -2.3655 -6.3836 3.5974 26 6 0.0664 -4.7568 3.1743 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 1.8937 -0.5137 3.9322 37 1 1.8935 1.0276 3.0423 38 1 0.4400 0.0000 3.0422 39 1 4.3770 -1.3930 0.6308 40 1 4.3777 0.1486 1.5206 41 1 4.3773 -1.3932 2.4105 42 1 1.6653 -2.7119 3.5651 43 1 3.1182 -3.2256 2.6744 44 1 1.5437 -5.0175 1.5436 45 1 2.6687 -6.2966 3.3069 46 1 2.2873 -5.0333 4.5579 47 1 -1.8005 -9.3674 4.8082 48 1 -4.3810 -8.8091 4.3718 49 1 -4.8419 -5.9176 2.2347 50 1 -5.8166 -4.4748 3.8702 51 1 -2.1358 -5.4996 3.2706 52 1 -0.1598 -4.0108 3.9361 53 1 -0.7330 -4.8732 2.4425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14186584_6580494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:37:14 Heat of formation + Delta-G solvation = -85.346405 kcal Electronic energy + Delta-G solvation = -30020.087711 eV Core-core repulsion = 26017.030460 eV Total energy + Delta-G solvation = -4003.057251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.49649 -41.13554 -38.97085 -37.79263 -37.55113 -36.92598 -32.63839 -31.76379 -31.06157 -29.53382 -29.19146 -27.95907 -27.69272 -27.48795 -27.41726 -25.95125 -22.81176 -21.58191 -21.42996 -20.61359 -20.51538 -18.84308 -18.67096 -17.92437 -17.50534 -17.17379 -16.62272 -16.38625 -16.03641 -15.96236 -15.61687 -15.20472 -14.96317 -14.86812 -14.69402 -14.61129 -14.51065 -14.22994 -14.01657 -13.89660 -13.75829 -13.61261 -13.54595 -13.50137 -13.38450 -13.29985 -13.02720 -13.02201 -12.76319 -12.65024 -12.50369 -12.30491 -12.10813 -11.98777 -11.84715 -11.80107 -11.58881 -11.48070 -10.95485 -10.61819 -10.47730 -10.17050 -9.99380 -9.87591 -9.14167 0.43646 0.98931 1.28123 1.39808 1.48010 1.60238 1.63719 1.66786 1.87128 1.94094 2.16810 2.30709 2.45939 3.05743 3.18004 3.37465 3.65209 3.73739 3.79480 4.02289 4.02948 4.03709 4.07863 4.11151 4.18986 4.22182 4.32924 4.36324 4.38258 4.43619 4.51342 4.57234 4.60417 4.62830 4.63826 4.68149 4.72657 4.76484 4.90842 4.97033 5.01407 5.02016 5.07432 5.10100 5.18350 5.24971 5.29020 5.32476 5.39868 5.44716 5.50444 5.72654 5.91809 6.30962 6.38087 6.54016 7.13390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.289 2.711 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.623 6.623 9 C 0.092 3.908 10 C -0.117 4.117 11 C 0.115 3.885 12 N -0.650 5.650 13 C 0.614 3.386 14 O -0.524 6.524 15 C -0.046 4.046 16 C -0.097 4.097 17 C -0.205 4.205 18 C 0.065 3.935 19 C -0.069 4.069 20 O -0.549 6.549 21 Si 0.973 3.027 22 H -0.246 1.246 23 H -0.243 1.243 24 H -0.255 1.255 25 N -0.522 5.522 26 C 0.095 3.905 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.118 0.882 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.154 0.846 48 H 0.147 0.853 49 H 0.078 0.922 50 H 0.385 0.615 51 H 0.416 0.584 52 H 0.094 0.906 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 5.114 -2.505 5.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.419 4.419 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.420 2.580 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.582 6.582 9 C 0.016 3.984 10 C -0.136 4.136 11 C -0.007 4.007 12 N -0.386 5.386 13 C 0.405 3.595 14 O -0.399 6.399 15 C -0.160 4.160 16 C -0.123 4.123 17 C -0.229 4.229 18 C -0.053 4.053 19 C -0.179 4.179 20 O -0.356 6.356 21 Si 0.792 3.208 22 H -0.169 1.169 23 H -0.166 1.166 24 H -0.179 1.179 25 N -0.121 5.121 26 C -0.028 4.028 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.136 0.864 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.172 0.828 48 H 0.164 0.836 49 H 0.096 0.904 50 H 0.233 0.767 51 H 0.257 0.743 52 H 0.112 0.888 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.810 3.623 -1.998 4.516 hybrid contribution 0.189 1.596 -0.370 1.649 sum -1.621 5.219 -2.368 5.955 Atomic orbital electron populations 1.21511 0.93841 1.01924 1.01816 1.25796 1.00659 1.02667 1.12748 1.21558 1.00811 0.94898 1.02175 1.21511 1.00644 1.00205 0.96772 0.76672 0.63020 0.53356 0.64915 1.27049 1.06991 1.09616 1.17745 1.27047 1.25048 1.04806 1.04524 1.85363 1.79310 1.46060 1.47481 1.21991 0.98665 0.90559 0.87207 1.23255 0.94736 0.94820 1.00756 1.23192 0.84868 0.95065 0.97567 1.49838 1.10144 1.13262 1.65372 1.16666 0.85123 0.81082 0.76613 1.90879 1.63271 1.39395 1.46376 1.20326 0.89092 0.92597 1.13941 1.21281 0.91965 0.97576 1.01490 1.20647 0.97680 0.96107 1.08509 1.19882 0.84704 0.94714 1.05982 1.24577 1.02161 0.93869 0.97264 1.86486 1.48910 1.36491 1.63703 0.85329 0.74399 0.78577 0.82463 1.16884 1.16624 1.17918 1.42224 1.05613 1.15046 1.49203 1.23474 0.98222 0.84515 0.96563 0.92706 0.92805 0.92211 0.92495 0.92481 0.92516 0.92174 0.92799 0.92680 0.91474 0.90664 0.90871 0.90818 0.90697 0.91435 0.92006 0.91580 0.86374 0.88978 0.89117 0.82848 0.83573 0.90383 0.76661 0.74350 0.88847 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.17 7.85 37.16 0.29 0.46 16 2 C -0.38 0.57 0.53 -90.62 -0.05 0.52 16 3 C -0.14 0.21 7.85 37.16 0.29 0.50 16 4 C -0.13 0.14 7.85 37.16 0.29 0.43 16 5 Si 1.29 -3.40 8.45 -169.99 -1.44 -4.84 16 6 C -0.51 1.11 8.50 101.05 0.86 1.97 16 7 C -0.51 1.00 8.50 101.05 0.86 1.86 16 8 O -0.62 1.27 8.56 -35.23 -0.30 0.97 16 9 C 0.09 -0.30 4.98 37.16 0.19 -0.12 16 10 C -0.12 0.31 4.20 -89.69 -0.38 -0.07 16 11 C 0.12 -0.16 8.40 -2.97 -0.02 -0.18 16 12 N -0.65 -0.68 3.61 -179.91 -0.65 -1.33 16 13 C 0.61 2.77 8.02 -12.86 -0.10 2.66 16 14 O -0.52 -4.24 17.61 5.19 0.09 -4.15 16 15 C -0.05 -0.16 7.01 -81.98 -0.57 -0.74 16 16 C -0.10 -0.34 10.65 -39.12 -0.42 -0.76 16 17 C -0.20 -0.44 9.32 -39.98 -0.37 -0.81 16 18 C 0.07 0.09 6.51 -81.95 -0.53 -0.44 16 19 C -0.07 0.09 3.07 36.00 0.11 0.20 16 20 O -0.55 0.67 12.86 -35.23 -0.45 0.22 16 21 Si 0.97 -1.50 25.83 -169.99 -4.39 -5.89 16 22 H -0.25 0.19 7.11 56.52 0.40 0.59 16 23 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 24 H -0.26 0.43 7.11 56.52 0.40 0.84 16 25 N -0.52 -0.70 5.89 -5.70 -0.03 -0.73 16 26 C 0.10 -0.21 6.93 -2.98 -0.02 -0.23 16 27 H 0.05 -0.10 7.79 -51.93 -0.40 -0.50 16 28 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.06 -0.08 7.97 -51.93 -0.41 -0.49 16 30 H 0.06 -0.12 7.79 -51.93 -0.40 -0.52 16 31 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.06 -0.12 7.79 -51.93 -0.40 -0.52 16 33 H 0.06 -0.06 7.97 -51.93 -0.41 -0.47 16 34 H 0.05 -0.03 8.14 -51.93 -0.42 -0.45 16 35 H 0.05 -0.08 7.79 -51.93 -0.40 -0.48 16 36 H 0.07 -0.17 7.48 -51.93 -0.39 -0.56 16 37 H 0.07 -0.16 7.79 -51.93 -0.40 -0.56 16 38 H 0.07 -0.14 7.79 -51.93 -0.40 -0.55 16 39 H 0.07 -0.12 7.79 -51.93 -0.40 -0.52 16 40 H 0.07 -0.14 7.79 -51.93 -0.40 -0.55 16 41 H 0.07 -0.16 7.48 -51.93 -0.39 -0.55 16 42 H 0.06 -0.28 6.91 -51.93 -0.36 -0.64 16 43 H 0.07 -0.29 7.21 -51.93 -0.37 -0.67 16 44 H 0.12 -0.27 8.14 -51.93 -0.42 -0.69 16 45 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 46 H 0.09 -0.25 8.10 -51.93 -0.42 -0.67 16 47 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 48 H 0.15 0.05 6.17 -52.49 -0.32 -0.27 16 49 H 0.08 -0.27 7.96 -51.93 -0.41 -0.68 16 50 H 0.39 -2.19 8.74 45.56 0.40 -1.79 16 51 H 0.42 -0.34 5.77 -40.82 -0.24 -0.57 16 52 H 0.09 -0.32 7.89 -51.93 -0.41 -0.73 16 53 H 0.08 -0.24 6.50 -51.93 -0.34 -0.58 16 LS Contribution 421.51 15.07 6.35 6.35 Total: 0.00 -8.78 421.51 -9.05 -17.83 By element: Atomic # 1 Polarization: -5.04 SS G_CDS: -8.65 Total: -13.69 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 0.42 Total: 5.27 kcal Atomic # 7 Polarization: -1.38 SS G_CDS: -0.68 Total: -2.06 kcal Atomic # 8 Polarization: -2.30 SS G_CDS: -0.66 Total: -2.96 kcal Atomic # 14 Polarization: -4.90 SS G_CDS: -5.83 Total: -10.73 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -8.78 -9.05 -17.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_6580494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.521 kcal (2) G-P(sol) polarization free energy of solvation -8.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds