Wall clock time and date at job start Sun Mar 7 2021 00:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47232 * 2 1 4 4 C 1.52998 * 109.46885 * 240.00077 * 2 1 3 5 5 Si 1.86296 * 109.46837 * 120.00085 * 2 1 3 6 6 C 1.86299 * 109.47338 * 299.99843 * 5 2 1 7 7 C 1.86302 * 109.47073 * 179.97438 * 5 2 1 8 8 O 1.63101 * 109.47107 * 60.00134 * 5 2 1 9 9 C 1.42904 * 113.99860 * 179.97438 * 8 5 2 10 10 C 1.53002 * 109.46938 * 179.97438 * 9 8 5 11 11 C 1.53947 * 113.73874 * 174.99950 * 10 9 8 12 12 N 1.47584 * 86.11565 * 137.95347 * 11 10 9 13 13 C 1.34776 * 134.49098 * 155.35611 * 12 11 10 14 14 O 1.21701 * 120.00147 * 0.02562 * 13 12 11 15 15 C 1.46673 * 119.99920 * 179.97438 * 13 12 11 16 16 C 1.37872 * 126.23380 * 179.69007 * 15 13 12 17 17 C 1.39840 * 107.08754 * 179.84988 * 16 15 13 18 18 C 1.35457 * 107.86241 * 0.42045 * 17 16 15 19 19 C 1.50698 * 125.56701 * 179.77755 * 18 17 16 20 20 O 1.42897 * 109.47298 * 119.95490 * 19 18 17 21 21 Si 1.86308 * 109.46812 * 359.95488 * 19 18 17 22 22 H 1.48502 * 109.47154 * 300.00318 * 21 19 18 23 23 H 1.48499 * 109.46976 * 60.00472 * 21 19 18 24 24 H 1.48497 * 109.47052 * 180.02562 * 21 19 18 25 25 N 1.35532 * 108.86933 * 359.73736 * 18 17 16 26 26 C 1.47576 * 91.01498 * 335.35788 * 12 11 10 27 27 H 1.08999 * 109.46834 * 300.00251 * 1 2 3 28 28 H 1.08999 * 109.46612 * 59.99617 * 1 2 3 29 29 H 1.08999 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46726 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47261 * 300.00148 * 3 2 1 32 32 H 1.09001 * 109.47016 * 59.99765 * 3 2 1 33 33 H 1.08999 * 109.47179 * 300.00062 * 4 2 1 34 34 H 1.09002 * 109.47616 * 60.00023 * 4 2 1 35 35 H 1.08997 * 109.47090 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47074 * 180.02562 * 6 5 2 37 37 H 1.09006 * 109.46834 * 299.99848 * 6 5 2 38 38 H 1.08997 * 109.47234 * 59.99780 * 6 5 2 39 39 H 1.09001 * 109.47408 * 300.00065 * 7 5 2 40 40 H 1.08999 * 109.46931 * 60.00061 * 7 5 2 41 41 H 1.09000 * 109.47355 * 180.02562 * 7 5 2 42 42 H 1.09004 * 109.47342 * 59.99809 * 9 8 5 43 43 H 1.08997 * 109.47102 * 299.99639 * 9 8 5 44 44 H 1.08999 * 113.01600 * 43.34083 * 10 9 8 45 45 H 1.09001 * 113.76955 * 252.25382 * 11 10 9 46 46 H 1.08997 * 113.77064 * 23.65458 * 11 10 9 47 47 H 1.08002 * 126.46048 * 359.96958 * 16 15 13 48 48 H 1.08000 * 126.07043 * 180.18369 * 17 16 15 49 49 H 1.08994 * 109.47142 * 239.96141 * 19 18 17 50 50 H 0.96703 * 113.99876 * 180.02562 * 20 19 18 51 51 H 0.97005 * 125.67809 * 180.02562 * 25 18 17 52 52 H 1.09003 * 113.77250 * 270.33779 * 26 12 11 53 53 H 1.09001 * 113.87174 * 138.94936 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8790 1.5208 8 8 1.6073 -2.4160 1.5210 9 6 2.0294 -3.1817 2.6514 10 6 1.4634 -4.5994 2.5470 11 6 1.9578 -5.5471 3.6548 12 7 0.5659 -6.0332 3.7213 13 6 -0.0155 -7.1815 4.1209 14 8 0.6688 -8.0955 4.5424 15 6 -1.4730 -7.3293 4.0490 16 6 -2.1982 -8.4431 4.4158 17 6 -3.5461 -8.1495 4.1865 18 6 -3.6183 -6.8929 3.6859 19 6 -4.8850 -6.1776 3.2924 20 8 -5.0210 -4.9868 4.0705 21 14 -6.3474 -7.2904 3.5991 22 1 -6.2060 -8.5279 2.7905 23 1 -6.4062 -7.6446 5.0400 24 1 -7.5956 -6.5858 3.2108 25 7 -2.3655 -6.3836 3.5974 26 6 0.0664 -4.7568 3.1743 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 1.8937 -0.5137 3.9322 37 1 1.8935 1.0276 3.0423 38 1 0.4400 0.0000 3.0422 39 1 4.3770 -1.3930 0.6308 40 1 4.3777 0.1486 1.5206 41 1 4.3773 -1.3932 2.4105 42 1 1.6653 -2.7119 3.5651 43 1 3.1182 -3.2256 2.6744 44 1 1.5437 -5.0175 1.5436 45 1 2.6687 -6.2966 3.3069 46 1 2.2873 -5.0333 4.5579 47 1 -1.8005 -9.3674 4.8082 48 1 -4.3810 -8.8091 4.3718 49 1 -4.8419 -5.9176 2.2347 50 1 -5.8166 -4.4748 3.8702 51 1 -2.1358 -5.4996 3.2706 52 1 -0.1598 -4.0108 3.9361 53 1 -0.7330 -4.8732 2.4425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_6580494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:37:14 Heat of formation + Delta-G solvation = -82.797237 kcal Electronic energy + Delta-G solvation = -30019.977171 eV Core-core repulsion = 26017.030460 eV Total energy + Delta-G solvation = -4002.946711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.61513 -41.13227 -39.13409 -37.65699 -37.42699 -36.78766 -32.73683 -31.89380 -31.04372 -29.33734 -29.01626 -27.82245 -27.61696 -27.35538 -27.30369 -25.89484 -22.85736 -21.69120 -21.38383 -20.67486 -20.37979 -18.88936 -18.51798 -17.73213 -17.51984 -17.17819 -16.60306 -16.31288 -15.95859 -15.87019 -15.61749 -15.19798 -14.82965 -14.77329 -14.73128 -14.56578 -14.50609 -14.21293 -13.88461 -13.78761 -13.69756 -13.57912 -13.53770 -13.35936 -13.26834 -13.12596 -12.91629 -12.90027 -12.70978 -12.49144 -12.36339 -12.14345 -12.00462 -11.93897 -11.69744 -11.66942 -11.48424 -11.33360 -11.03232 -10.48068 -10.25922 -10.14821 -10.02056 -9.97186 -9.26765 0.24805 1.09328 1.45689 1.47793 1.53443 1.63229 1.64622 1.84314 1.96773 2.12494 2.17369 2.21777 2.51212 3.21360 3.31006 3.38925 3.80287 3.89600 3.89993 4.15928 4.16149 4.17696 4.20759 4.27978 4.28436 4.36975 4.45398 4.49074 4.51795 4.56549 4.63108 4.72209 4.78752 4.81090 4.83228 4.84199 4.85420 4.86981 4.90019 5.03691 5.05694 5.12571 5.13308 5.17072 5.25051 5.38405 5.45178 5.47511 5.56215 5.58529 5.64847 5.69695 5.74447 6.29338 6.43231 6.76176 6.90333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.386 4.386 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.329 2.671 6 C -0.520 4.520 7 C -0.524 4.524 8 O -0.633 6.633 9 C 0.083 3.917 10 C -0.103 4.103 11 C 0.107 3.893 12 N -0.652 5.652 13 C 0.606 3.394 14 O -0.576 6.576 15 C -0.063 4.063 16 C -0.117 4.117 17 C -0.220 4.220 18 C 0.067 3.933 19 C -0.066 4.066 20 O -0.564 6.564 21 Si 1.004 2.996 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.246 1.246 25 N -0.512 5.512 26 C 0.091 3.909 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.109 0.891 47 H 0.147 0.853 48 H 0.157 0.843 49 H 0.107 0.893 50 H 0.405 0.595 51 H 0.426 0.574 52 H 0.114 0.886 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.510 6.833 -2.706 7.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.428 4.428 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.458 2.542 6 C -0.622 4.622 7 C -0.625 4.625 8 O -0.593 6.593 9 C 0.008 3.992 10 C -0.122 4.122 11 C -0.014 4.014 12 N -0.386 5.386 13 C 0.398 3.602 14 O -0.456 6.456 15 C -0.176 4.176 16 C -0.144 4.144 17 C -0.244 4.244 18 C -0.052 4.052 19 C -0.175 4.175 20 O -0.374 6.374 21 Si 0.826 3.174 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.170 1.170 25 N -0.111 5.111 26 C -0.030 4.030 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.127 0.873 47 H 0.165 0.835 48 H 0.175 0.825 49 H 0.125 0.875 50 H 0.257 0.743 51 H 0.268 0.732 52 H 0.132 0.868 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.454 5.430 -2.249 6.369 hybrid contribution 0.368 1.112 -0.331 1.217 sum -2.086 6.541 -2.581 7.335 Atomic orbital electron populations 1.21542 0.94115 1.01968 1.01735 1.25997 1.00547 1.02837 1.13431 1.21609 1.01180 0.95014 1.02111 1.21543 1.00909 1.00141 0.96856 0.75945 0.61964 0.52689 0.63617 1.27127 1.07057 1.09736 1.18238 1.27184 1.25905 1.04800 1.04595 1.85345 1.79487 1.46345 1.48085 1.22176 0.99633 0.89864 0.87557 1.23093 0.94113 0.95086 0.99897 1.23443 0.83785 0.95208 0.98989 1.49993 1.11645 1.13238 1.63719 1.16861 0.85396 0.81551 0.76408 1.90831 1.64321 1.41359 1.49123 1.20266 0.89093 0.93276 1.14993 1.21442 0.92982 0.97813 1.02148 1.20866 0.97394 0.97061 1.09068 1.20379 0.85621 0.94656 1.04568 1.24595 1.00248 0.93949 0.98720 1.86434 1.50466 1.36488 1.64031 0.84882 0.74614 0.77841 0.80055 1.18274 1.19782 1.16972 1.42188 1.05239 1.15111 1.48602 1.23789 0.98913 0.83118 0.97205 0.91999 0.93723 0.92073 0.92023 0.93389 0.91790 0.92244 0.93661 0.92324 0.90787 0.90777 0.90876 0.91315 0.90792 0.90821 0.90149 0.90225 0.86857 0.89744 0.87263 0.83482 0.82504 0.87549 0.74308 0.73153 0.86833 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.39 7.85 71.98 0.56 0.95 16 2 C -0.39 1.30 0.53 -10.79 -0.01 1.29 16 3 C -0.14 0.45 7.85 71.98 0.56 1.02 16 4 C -0.14 0.26 7.85 71.98 0.56 0.82 16 5 Si 1.33 -8.60 8.45 68.60 0.58 -8.02 16 6 C -0.52 3.11 8.50 113.37 0.96 4.07 16 7 C -0.52 2.54 8.50 113.37 0.96 3.50 16 8 O -0.63 3.58 8.56 -148.98 -1.28 2.30 16 9 C 0.08 -0.71 4.98 71.98 0.36 -0.35 16 10 C -0.10 0.65 4.20 -10.13 -0.04 0.61 16 11 C 0.11 -0.31 8.40 86.48 0.73 0.42 16 12 N -0.65 -1.57 3.61 -841.32 -3.03 -4.60 16 13 C 0.61 6.50 8.02 86.45 0.69 7.19 16 14 O -0.58 -10.97 17.61 -4.35 -0.08 -11.04 16 15 C -0.06 -0.52 7.01 40.35 0.28 -0.24 16 16 C -0.12 -1.06 10.65 22.57 0.24 -0.82 16 17 C -0.22 -1.15 9.32 22.01 0.21 -0.94 16 18 C 0.07 0.17 6.51 41.34 0.27 0.44 16 19 C -0.07 0.28 3.07 71.24 0.22 0.50 16 20 O -0.56 2.41 12.86 -148.98 -1.92 0.50 16 21 Si 1.00 -3.76 25.83 68.60 1.77 -1.99 16 22 H -0.26 0.44 7.11 99.48 0.71 1.14 16 23 H -0.27 -0.30 7.11 99.48 0.71 0.41 16 24 H -0.25 1.27 7.11 99.48 0.71 1.97 16 25 N -0.51 -1.29 5.89 -171.93 -1.01 -2.30 16 26 C 0.09 -0.51 6.93 86.48 0.60 0.09 16 27 H 0.06 -0.27 7.79 -2.39 -0.02 -0.29 16 28 H 0.04 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.06 -0.20 7.97 -2.39 -0.02 -0.21 16 30 H 0.06 -0.26 7.79 -2.39 -0.02 -0.28 16 31 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.06 -0.30 7.79 -2.39 -0.02 -0.32 16 33 H 0.06 -0.11 7.97 -2.39 -0.02 -0.13 16 34 H 0.04 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 36 H 0.07 -0.53 7.48 -2.39 -0.02 -0.55 16 37 H 0.07 -0.41 7.79 -2.38 -0.02 -0.42 16 38 H 0.07 -0.41 7.79 -2.39 -0.02 -0.43 16 39 H 0.07 -0.25 7.79 -2.39 -0.02 -0.27 16 40 H 0.07 -0.34 7.79 -2.39 -0.02 -0.36 16 41 H 0.07 -0.45 7.48 -2.39 -0.02 -0.47 16 42 H 0.08 -0.96 6.91 -2.38 -0.02 -0.97 16 43 H 0.08 -0.87 7.21 -2.39 -0.02 -0.88 16 44 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 45 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 46 H 0.11 -0.72 8.10 -2.39 -0.02 -0.74 16 47 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 48 H 0.16 0.28 6.17 -2.91 -0.02 0.26 16 49 H 0.11 -1.01 7.96 -2.39 -0.02 -1.03 16 50 H 0.41 -5.51 8.74 -74.06 -0.65 -6.16 16 51 H 0.43 -1.13 5.77 -92.70 -0.54 -1.66 16 52 H 0.11 -1.04 7.89 -2.39 -0.02 -1.06 16 53 H 0.09 -0.66 6.50 -2.39 -0.02 -0.67 16 Total: 0.00 -22.20 421.51 2.68 -19.53 By element: Atomic # 1 Polarization: -13.40 SS G_CDS: 0.47 Total: -12.93 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 7.17 Total: 18.55 kcal Atomic # 7 Polarization: -2.85 SS G_CDS: -4.05 Total: -6.90 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -3.27 Total: -8.24 kcal Atomic # 14 Polarization: -12.36 SS G_CDS: 2.35 Total: -10.01 kcal Total: -22.20 2.68 -19.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_6580494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.269 kcal (2) G-P(sol) polarization free energy of solvation -22.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds