Wall clock time and date at job start Sun Mar 7 2021 00:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33821 * 122.44651 * 2 1 4 4 C 1.50692 * 124.52143 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.46964 * 113.46168 * 4 3 2 6 6 Si 1.86303 * 109.47287 * 233.45938 * 4 3 2 7 7 H 1.48509 * 109.46904 * 60.00174 * 6 4 3 8 8 H 1.48497 * 109.47467 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46920 * 300.00618 * 6 4 3 10 10 S 1.70613 * 110.95259 * 180.02562 * 3 2 1 11 11 C 1.75832 * 91.56425 * 359.97438 * 10 3 2 12 12 C 1.46581 * 125.45670 * 179.97438 * 11 10 3 13 13 O 1.21709 * 119.99767 * 180.02562 * 12 11 10 14 14 N 1.34772 * 120.00552 * 0.02562 * 12 11 10 15 15 C 1.47580 * 134.49723 * 180.02562 * 14 12 11 16 16 C 1.53943 * 86.12103 * 155.35814 * 15 14 12 17 17 C 1.52995 * 113.74594 * 137.94934 * 16 15 14 18 18 O 1.42897 * 109.47426 * 176.92659 * 17 16 15 19 19 Si 1.63101 * 114.00202 * 180.02562 * 18 17 16 20 20 C 1.86304 * 109.46846 * 299.99775 * 19 18 17 21 21 C 1.86297 * 109.47060 * 59.99982 * 19 18 17 22 22 C 1.86298 * 109.47259 * 180.02562 * 19 18 17 23 23 C 1.53001 * 109.47355 * 59.99517 * 22 19 18 24 24 C 1.52994 * 109.47423 * 179.97438 * 22 19 18 25 25 C 1.53008 * 109.46893 * 300.00088 * 22 19 18 26 26 C 1.47821 * 134.45305 * 359.86824 * 14 12 11 27 27 C 1.36651 * 109.08186 * 0.24523 * 11 10 3 28 28 H 1.09002 * 109.47001 * 85.01936 * 1 2 3 29 29 H 1.09005 * 109.46971 * 205.01110 * 1 2 3 30 30 H 1.08998 * 109.47188 * 325.01236 * 1 2 3 31 31 H 1.08997 * 109.47514 * 353.45942 * 4 3 2 32 32 H 0.96705 * 114.00226 * 179.97438 * 5 4 3 33 33 H 1.08996 * 113.76867 * 41.05289 * 15 14 12 34 34 H 1.09005 * 113.76552 * 269.65957 * 15 14 12 35 35 H 1.09000 * 113.73792 * 269.15535 * 16 15 14 36 36 H 1.09001 * 109.47370 * 296.92516 * 17 16 15 37 37 H 1.08998 * 109.46920 * 56.92337 * 17 16 15 38 38 H 1.08999 * 109.46910 * 60.00355 * 20 19 18 39 39 H 1.09005 * 109.46945 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47071 * 300.00003 * 20 19 18 41 41 H 1.08997 * 109.47645 * 60.00048 * 21 19 18 42 42 H 1.09004 * 109.47164 * 180.02562 * 21 19 18 43 43 H 1.09000 * 109.46935 * 299.99777 * 21 19 18 44 44 H 1.08997 * 109.47139 * 60.00247 * 23 22 19 45 45 H 1.09000 * 109.47171 * 180.02562 * 23 22 19 46 46 H 1.09005 * 109.47116 * 300.00450 * 23 22 19 47 47 H 1.08998 * 109.47201 * 59.99573 * 24 22 19 48 48 H 1.09000 * 109.47227 * 179.97438 * 24 22 19 49 49 H 1.09001 * 109.47248 * 299.99657 * 24 22 19 50 50 H 1.08995 * 109.47293 * 59.99611 * 25 22 19 51 51 H 1.09002 * 109.47014 * 180.02562 * 25 22 19 52 52 H 1.08998 * 109.46772 * 299.99839 * 25 22 19 53 53 H 1.08991 * 113.76660 * 90.37742 * 26 14 12 54 54 H 1.09001 * 113.83325 * 318.91799 * 26 14 12 55 55 H 1.08001 * 123.34602 * 179.75981 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6354 2.5161 0.0006 5 8 1.9432 3.1640 1.2365 6 14 2.3543 3.4972 -1.4107 7 1 2.0345 2.8238 -2.6951 8 1 1.7738 4.8640 -1.4098 9 1 3.8282 3.5856 -1.2518 10 16 3.8969 0.7893 -0.0007 11 6 3.5937 -0.9426 -0.0002 12 6 4.6232 -1.9861 -0.0010 13 8 4.3002 -3.1596 -0.0011 14 7 5.9273 -1.6462 -0.0017 15 6 7.1937 -2.4040 -0.0031 16 6 7.8207 -1.1521 -0.6431 17 6 9.1962 -0.7939 -0.0769 18 8 9.7224 0.3328 -0.7809 19 14 11.1938 0.8101 -0.2637 20 6 11.0963 1.2827 1.5357 21 6 12.4090 -0.5862 -0.4742 22 6 11.7562 2.2794 -1.2614 23 6 10.7580 3.4259 -1.0881 24 6 13.1362 2.7276 -0.7759 25 6 11.8361 1.8919 -2.7394 26 6 6.6630 -0.3640 -0.0043 27 6 2.2446 -1.1600 -0.0051 28 1 -0.3633 0.0892 -1.0238 29 1 -0.3633 -0.9313 0.4345 30 1 -0.3633 0.8419 0.5892 31 1 0.5537 2.4511 -0.1161 32 1 1.5944 4.0632 1.3068 33 1 7.1840 -3.2746 -0.6588 34 1 7.5744 -2.6251 0.9941 35 1 7.7983 -1.1585 -1.7329 36 1 9.1011 -0.5493 0.9810 37 1 9.8697 -1.6428 -0.1945 38 1 10.7671 0.4233 2.1198 39 1 12.0796 1.6021 1.8813 40 1 10.3853 2.0996 1.6588 41 1 12.4661 -0.8627 -1.5269 42 1 13.3923 -0.2674 -0.1281 43 1 12.0798 -1.4455 0.1099 44 1 10.7011 3.7020 -0.0352 45 1 11.0869 4.2854 -1.6722 46 1 9.7747 3.1069 -1.4337 47 1 13.8475 1.9110 -0.8990 48 1 13.4654 3.5870 -1.3599 49 1 13.0789 3.0038 0.2770 50 1 10.8528 1.5729 -3.0850 51 1 12.1656 2.7514 -3.3231 52 1 12.5472 1.0751 -2.8629 53 1 6.8873 0.0157 0.9923 54 1 6.2303 0.3907 -0.6611 55 1 1.8020 -2.1451 -0.0096 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_6739946.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:37:38 Heat of formation + Delta-G solvation = -100.412969 kcal Electronic energy + Delta-G solvation = -31784.010583 eV Core-core repulsion = 27651.114395 eV Total energy + Delta-G solvation = -4132.896188 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 385.170 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.50929 -40.03896 -39.00783 -37.53494 -37.35771 -36.78053 -32.87890 -31.49410 -29.91296 -29.33083 -29.00598 -27.83627 -27.73678 -27.33113 -27.20808 -25.66798 -23.94144 -21.82010 -20.66960 -20.37239 -19.72128 -19.03594 -18.48512 -17.71361 -17.50390 -17.24084 -17.13173 -16.17586 -16.01689 -15.85563 -15.54180 -15.45955 -14.87857 -14.81949 -14.74046 -14.61596 -14.56007 -14.36900 -14.10568 -13.84556 -13.68914 -13.59747 -13.36771 -13.29825 -13.27955 -13.14453 -13.08912 -12.98120 -12.90885 -12.89178 -12.65937 -12.48242 -12.36063 -12.31149 -12.24224 -12.06343 -11.79769 -11.66132 -11.60115 -11.43289 -11.30467 -11.01057 -10.57883 -10.24228 -10.02057 -10.00058 -9.63627 -9.45161 -0.71044 0.31530 0.77954 0.98417 1.20176 1.38517 1.45430 1.49325 1.63509 1.84888 1.86965 2.01653 2.18676 2.52196 3.19327 3.28125 3.34409 3.82282 3.89521 3.91486 4.07253 4.16686 4.16833 4.23023 4.29603 4.33565 4.39786 4.43138 4.49936 4.50495 4.53619 4.55543 4.60861 4.71436 4.79976 4.81406 4.82328 4.84361 4.85609 4.86416 4.87540 4.90827 4.99943 5.04426 5.13199 5.13781 5.19037 5.25798 5.28632 5.38852 5.39457 5.45782 5.48509 5.58104 5.65999 5.70866 6.40691 6.74891 6.85763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.107 4.107 3 C -0.211 4.211 4 C -0.046 4.046 5 O -0.558 6.558 6 Si 0.935 3.065 7 H -0.259 1.259 8 H -0.226 1.226 9 H -0.248 1.248 10 S 0.238 5.762 11 C -0.283 4.283 12 C 0.606 3.394 13 O -0.577 6.577 14 N -0.649 5.649 15 C 0.110 3.890 16 C -0.104 4.104 17 C 0.084 3.916 18 O -0.634 6.634 19 Si 1.325 2.675 20 C -0.520 4.520 21 C -0.521 4.521 22 C -0.386 4.386 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.137 4.137 26 C 0.091 3.909 27 C -0.058 4.058 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.403 0.597 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.044 0.956 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.047 0.953 49 H 0.063 0.937 50 H 0.058 0.942 51 H 0.044 0.956 52 H 0.059 0.941 53 H 0.115 0.885 54 H 0.088 0.912 55 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.347 5.296 0.616 5.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.119 4.119 3 C -0.330 4.330 4 C -0.158 4.158 5 O -0.368 6.368 6 Si 0.755 3.245 7 H -0.183 1.183 8 H -0.148 1.148 9 H -0.172 1.172 10 S 0.509 5.491 11 C -0.403 4.403 12 C 0.397 3.603 13 O -0.459 6.459 14 N -0.383 5.383 15 C -0.011 4.011 16 C -0.123 4.123 17 C 0.008 3.992 18 O -0.594 6.594 19 Si 1.454 2.546 20 C -0.621 4.621 21 C -0.623 4.623 22 C -0.428 4.428 23 C -0.194 4.194 24 C -0.198 4.198 25 C -0.194 4.194 26 C -0.031 4.031 27 C -0.092 4.092 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.127 0.873 32 H 0.255 0.745 33 H 0.105 0.895 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.077 0.923 51 H 0.063 0.937 52 H 0.078 0.922 53 H 0.133 0.867 54 H 0.107 0.893 55 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.758 5.554 -0.147 6.203 hybrid contribution -1.322 -0.703 0.380 1.545 sum 1.436 4.851 0.233 5.065 Atomic orbital electron populations 1.20677 0.87433 1.04028 1.03668 1.18859 0.99338 0.90213 1.03527 1.23854 0.99610 0.99405 1.10163 1.24172 1.04015 0.91311 0.96275 1.86479 1.80616 1.34265 1.35435 0.85903 0.81411 0.80634 0.76569 1.18283 1.14788 1.17163 1.82960 1.02874 0.96005 1.67239 1.24524 0.97827 0.98128 1.19851 1.16795 0.81055 0.86793 0.75657 1.90812 1.81632 1.20046 1.53439 1.50016 1.03501 1.12536 1.72265 1.23444 0.78494 0.96470 1.02689 1.23111 0.92953 0.93913 1.02338 1.22176 0.93661 0.88060 0.95294 1.85344 1.56752 1.49156 1.68137 0.76026 0.53290 0.63209 0.62102 1.27119 1.04937 1.06219 1.23840 1.27147 1.14049 1.16227 1.04832 1.25991 0.99878 1.12468 1.04455 1.21547 0.98620 0.97476 1.01790 1.21603 0.95520 1.01411 1.01307 1.21542 1.01858 1.01092 0.94925 1.23846 0.89132 0.87210 1.02914 1.20792 0.91071 1.00418 0.96926 0.89569 0.90703 0.89973 0.87279 0.74532 0.89516 0.87036 0.86812 0.90160 0.89965 0.90716 0.90713 0.90979 0.91269 0.90733 0.90741 0.92015 0.93685 0.92218 0.91945 0.93400 0.91797 0.92305 0.93665 0.92227 0.86747 0.89350 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.17 9.48 71.24 0.68 0.84 16 2 C -0.11 -0.42 5.78 -21.05 -0.12 -0.54 16 3 C -0.21 -0.69 4.86 24.68 0.12 -0.57 16 4 C -0.05 0.10 2.76 71.23 0.20 0.29 16 5 O -0.56 1.17 12.86 -148.98 -1.92 -0.74 16 6 Si 0.93 -2.07 27.42 68.60 1.88 -0.19 16 7 H -0.26 -0.19 7.11 99.48 0.71 0.51 16 8 H -0.23 0.96 7.11 99.48 0.71 1.66 16 9 H -0.25 -0.01 7.11 99.48 0.71 0.69 16 10 S 0.24 0.91 18.43 -56.49 -1.04 -0.13 16 11 C -0.28 -2.46 6.44 24.08 0.16 -2.30 16 12 C 0.61 7.05 8.01 86.42 0.69 7.74 16 13 O -0.58 -11.12 17.57 -4.38 -0.08 -11.20 16 14 N -0.65 -2.80 3.61 -840.74 -3.04 -5.84 16 15 C 0.11 -0.20 8.41 86.49 0.73 0.53 16 16 C -0.10 0.47 4.19 -10.14 -0.04 0.43 16 17 C 0.08 -0.59 4.96 71.98 0.36 -0.24 16 18 O -0.63 2.58 8.56 -148.98 -1.28 1.31 16 19 Si 1.32 -7.11 8.45 68.60 0.58 -6.53 16 20 C -0.52 2.57 8.50 113.37 0.96 3.53 16 21 C -0.52 2.26 8.50 113.37 0.96 3.22 16 22 C -0.39 0.90 0.53 -10.79 -0.01 0.89 16 23 C -0.14 0.19 7.85 71.98 0.56 0.76 16 24 C -0.14 0.35 7.85 71.98 0.56 0.91 16 25 C -0.14 0.13 7.85 71.98 0.56 0.70 16 26 C 0.09 -0.19 6.88 86.44 0.59 0.40 16 27 C -0.06 -0.44 9.78 21.72 0.21 -0.23 16 28 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H 0.07 -0.15 8.11 -2.38 -0.02 -0.17 16 30 H 0.08 -0.31 6.98 -2.39 -0.02 -0.33 16 31 H 0.11 -0.71 6.24 -2.39 -0.01 -0.73 16 32 H 0.40 -4.69 8.74 -74.05 -0.65 -5.34 16 33 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.11 -0.66 8.10 -2.38 -0.02 -0.68 16 35 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.08 -0.84 6.95 -2.39 -0.02 -0.86 16 37 H 0.08 -0.83 7.21 -2.39 -0.02 -0.85 16 38 H 0.07 -0.47 7.48 -2.39 -0.02 -0.49 16 39 H 0.07 -0.35 7.79 -2.38 -0.02 -0.37 16 40 H 0.07 -0.31 7.79 -2.39 -0.02 -0.33 16 41 H 0.07 -0.23 7.79 -2.39 -0.02 -0.24 16 42 H 0.07 -0.31 7.79 -2.39 -0.02 -0.33 16 43 H 0.07 -0.42 7.48 -2.39 -0.02 -0.44 16 44 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 45 H 0.04 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.06 -0.08 7.97 -2.38 -0.02 -0.10 16 47 H 0.06 -0.23 7.80 -2.39 -0.02 -0.25 16 48 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 49 H 0.06 -0.26 7.79 -2.39 -0.02 -0.27 16 50 H 0.06 -0.04 7.96 -2.39 -0.02 -0.06 16 51 H 0.04 0.02 8.14 -2.39 -0.02 0.00 16 52 H 0.06 -0.13 7.80 -2.39 -0.02 -0.15 16 53 H 0.11 -0.66 7.92 -2.39 -0.02 -0.68 16 54 H 0.09 -0.18 6.43 -2.39 -0.02 -0.19 16 55 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 Total: 0.00 -20.29 447.64 3.27 -17.02 By element: Atomic # 1 Polarization: -11.03 SS G_CDS: 0.97 Total: -10.06 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 7.18 Total: 16.37 kcal Atomic # 7 Polarization: -2.80 SS G_CDS: -3.04 Total: -5.84 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -3.27 Total: -10.63 kcal Atomic # 14 Polarization: -9.18 SS G_CDS: 2.46 Total: -6.72 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -1.04 Total: -0.13 kcal Total: -20.29 3.27 -17.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_6739946.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.397 kcal (2) G-P(sol) polarization free energy of solvation -20.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds