Wall clock time and date at job start Sun Mar 7 2021 00:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46895 * 2 1 4 4 C 1.52999 * 109.46974 * 239.99358 * 2 1 3 5 5 Si 1.86306 * 109.46770 * 119.99754 * 2 1 3 6 6 C 1.86295 * 109.47103 * 300.00065 * 5 2 1 7 7 C 1.86299 * 109.46810 * 180.02562 * 5 2 1 8 8 O 1.63101 * 109.46956 * 60.00209 * 5 2 1 9 9 C 1.42902 * 113.99778 * 179.97438 * 8 5 2 10 10 C 1.52992 * 109.47017 * 179.97438 * 9 8 5 11 11 C 1.53506 * 114.20831 * 175.00146 * 10 9 8 12 12 N 1.47063 * 87.98842 * 139.65474 * 11 10 9 13 13 C 1.34770 * 136.05821 * 152.84177 * 12 11 10 14 14 O 1.21638 * 120.00253 * 176.03118 * 13 12 11 15 15 C 1.47191 * 120.00131 * 356.03687 * 13 12 11 16 16 C 1.36012 * 123.45627 * 6.35980 * 15 13 12 17 17 S 1.70453 * 110.81245 * 179.85560 * 16 15 13 18 18 C 1.75501 * 92.44631 * 0.34328 * 17 16 15 19 19 C 1.50699 * 124.71199 * 179.80272 * 18 17 16 20 20 O 1.42905 * 109.47001 * 119.99824 * 19 18 17 21 21 Si 1.86303 * 109.47150 * 0.02562 * 19 18 17 22 22 H 1.48499 * 109.47017 * 179.97438 * 21 19 18 23 23 H 1.48506 * 109.46842 * 299.99855 * 21 19 18 24 24 H 1.48495 * 109.47125 * 59.99732 * 21 19 18 25 25 C 1.32766 * 110.57517 * 359.80427 * 18 17 16 26 26 C 1.47065 * 87.88520 * 332.88124 * 12 11 10 27 27 H 1.08995 * 109.47117 * 300.00191 * 1 2 3 28 28 H 1.09007 * 109.47016 * 60.00189 * 1 2 3 29 29 H 1.09003 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46644 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47435 * 299.99358 * 3 2 1 32 32 H 1.08995 * 109.47394 * 59.99978 * 3 2 1 33 33 H 1.08998 * 109.47332 * 300.00309 * 4 2 1 34 34 H 1.09006 * 109.46974 * 60.00913 * 4 2 1 35 35 H 1.08999 * 109.46931 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.46999 * 180.02562 * 6 5 2 37 37 H 1.09003 * 109.47331 * 300.00065 * 6 5 2 38 38 H 1.08999 * 109.47318 * 60.00367 * 6 5 2 39 39 H 1.09005 * 109.46999 * 299.99888 * 7 5 2 40 40 H 1.08998 * 109.47396 * 59.99850 * 7 5 2 41 41 H 1.09006 * 109.46565 * 180.02562 * 7 5 2 42 42 H 1.08997 * 109.46906 * 59.99789 * 9 8 5 43 43 H 1.08997 * 109.47010 * 299.99963 * 9 8 5 44 44 H 1.09001 * 113.41540 * 41.80007 * 10 9 8 45 45 H 1.09002 * 113.46239 * 24.86849 * 11 10 9 46 46 H 1.09004 * 113.46482 * 254.43509 * 11 10 9 47 47 H 1.07994 * 124.59773 * 359.97295 * 16 15 13 48 48 H 1.08994 * 109.47393 * 239.99786 * 19 18 17 49 49 H 0.96697 * 113.99420 * 179.97438 * 20 19 18 50 50 H 1.08001 * 123.45811 * 179.97438 * 25 18 17 51 51 H 1.09000 * 113.47198 * 141.89930 * 26 12 11 52 52 H 1.09003 * 113.46556 * 272.28025 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 14 2.1510 -0.8782 1.5213 6 6 1.5299 0.0001 3.0423 7 6 4.0139 -0.8775 1.5217 8 8 1.6073 -2.4159 1.5212 9 6 2.0293 -3.1816 2.6516 10 6 1.4634 -4.5992 2.5473 11 6 1.9495 -5.5535 3.6471 12 7 0.5826 -6.0923 3.7115 13 6 0.0177 -7.2666 4.0555 14 8 -1.1935 -7.3784 4.0677 15 6 0.8663 -8.4138 4.4165 16 6 2.2177 -8.3348 4.5481 17 16 2.8739 -9.8483 4.9772 18 6 1.2966 -10.6180 4.9721 19 6 1.0508 -12.0730 5.2778 20 8 0.1825 -12.1823 6.4076 21 14 2.6712 -12.9102 5.6574 22 1 2.4288 -14.3439 5.9592 23 1 3.5739 -12.7966 4.4837 24 1 3.3024 -12.2574 6.8324 25 6 0.3502 -9.7402 4.6616 26 6 0.1036 -4.7863 3.2344 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.1300 -0.7210 -1.2494 36 1 1.8935 -0.5135 3.9323 37 1 1.8932 1.0278 3.0423 38 1 0.4399 0.0001 3.0423 39 1 4.3777 -1.3912 0.6317 40 1 4.3769 0.1502 1.5218 41 1 4.3772 -1.3918 2.4115 42 1 1.6652 -2.7117 3.5651 43 1 3.1182 -3.2255 2.6746 44 1 1.5162 -5.0137 1.5406 45 1 2.2583 -5.0430 4.5593 46 1 2.6857 -6.2780 3.2989 47 1 2.7964 -7.4347 4.4025 48 1 0.5871 -12.5521 4.4156 49 1 -0.0198 -13.0932 6.6613 50 1 -0.6981 -9.9923 4.5983 51 1 -0.7296 -4.8584 2.5354 52 1 -0.0802 -4.0718 4.0369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14186584_6894386.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:40:00 Heat of formation + Delta-G solvation = -90.436979 kcal Electronic energy + Delta-G solvation = -29109.547707 eV Core-core repulsion = 25132.621729 eV Total energy + Delta-G solvation = -3976.925978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68203 -39.58421 -38.46803 -37.56524 -37.09565 -36.87394 -32.58441 -31.18655 -29.50081 -29.14770 -27.90939 -27.60470 -27.42753 -27.29047 -26.64964 -24.73102 -22.02054 -20.92325 -20.47091 -20.14046 -18.67949 -18.38924 -17.91458 -17.74451 -17.30808 -16.67414 -16.44401 -16.19065 -15.92845 -15.63088 -15.25974 -14.92945 -14.89285 -14.79613 -14.54735 -14.25265 -14.10941 -13.98836 -13.85125 -13.73301 -13.59436 -13.51900 -13.49086 -13.35928 -13.26216 -12.98101 -12.97080 -12.68855 -12.61286 -12.44988 -12.41213 -12.20059 -12.10216 -11.99160 -11.75287 -11.71142 -11.44362 -11.38337 -10.75809 -10.52047 -10.43179 -10.12187 -9.91660 -9.80909 -9.43299 -0.31940 0.31269 0.66763 0.92700 1.06256 1.33333 1.37069 1.39232 1.66974 1.74333 1.81024 1.98459 2.33528 2.40360 3.08821 3.24950 3.47648 3.63066 3.77272 3.81305 3.92280 4.07881 4.08143 4.10068 4.18040 4.21498 4.28133 4.31627 4.37743 4.43001 4.45526 4.60250 4.63270 4.65779 4.66745 4.68771 4.71268 4.77207 4.81436 4.81879 4.96140 5.03501 5.06876 5.07189 5.09856 5.15516 5.30064 5.31402 5.34401 5.37453 5.45981 5.48414 5.54235 6.48763 6.64697 7.19727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.376 4.376 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.289 2.711 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.621 6.621 9 C 0.096 3.904 10 C -0.122 4.122 11 C 0.094 3.906 12 N -0.645 5.645 13 C 0.609 3.391 14 O -0.529 6.529 15 C -0.149 4.149 16 C -0.210 4.210 17 S 0.180 5.820 18 C -0.198 4.198 19 C -0.040 4.040 20 O -0.541 6.541 21 Si 0.888 3.112 22 H -0.228 1.228 23 H -0.231 1.231 24 H -0.230 1.230 25 C -0.051 4.051 26 C 0.112 3.888 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.120 0.880 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.179 0.821 48 H 0.087 0.913 49 H 0.383 0.617 50 H 0.158 0.842 51 H 0.085 0.915 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.782 0.046 -0.265 5.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.419 4.419 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.420 2.580 6 C -0.614 4.614 7 C -0.613 4.613 8 O -0.581 6.581 9 C 0.020 3.980 10 C -0.141 4.141 11 C -0.030 4.030 12 N -0.380 5.380 13 C 0.398 3.602 14 O -0.406 6.406 15 C -0.167 4.167 16 C -0.348 4.348 17 S 0.446 5.554 18 C -0.314 4.314 19 C -0.153 4.153 20 O -0.348 6.348 21 Si 0.707 3.293 22 H -0.150 1.150 23 H -0.154 1.154 24 H -0.152 1.152 25 C -0.080 4.080 26 C -0.011 4.011 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.111 0.889 46 H 0.105 0.895 47 H 0.196 0.804 48 H 0.105 0.895 49 H 0.231 0.769 50 H 0.176 0.824 51 H 0.104 0.896 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.148 -0.715 0.115 7.184 hybrid contribution -1.587 0.835 -0.176 1.802 sum 5.560 0.120 -0.062 5.562 Atomic orbital electron populations 1.21515 0.93770 1.02059 1.01806 1.25801 1.00725 1.02628 1.12755 1.21557 1.00748 0.94941 1.02169 1.21512 1.00561 1.00261 0.96783 0.76677 0.62950 0.53412 0.64955 1.27048 1.07097 1.09545 1.17705 1.27041 1.25068 1.04782 1.04446 1.85369 1.79265 1.46020 1.47405 1.21901 0.98327 0.90505 0.87292 1.23103 0.96249 0.94586 1.00175 1.23275 0.86047 0.94975 0.98670 1.49298 1.10302 1.11145 1.67275 1.17068 0.86728 0.80386 0.76011 1.90839 1.13949 1.83017 1.52762 1.20136 0.92334 0.94880 1.09334 1.26140 0.98570 1.04276 1.05823 1.83136 1.08073 0.98865 1.65292 1.23535 0.96572 0.99330 1.11992 1.23979 1.04719 0.94460 0.92103 1.86533 1.68348 1.32490 1.47385 0.86361 0.76894 0.82457 0.83590 1.14991 1.15376 1.15234 1.21007 1.00927 0.89320 0.96718 1.23103 0.98091 0.82587 0.97275 0.92698 0.92820 0.92096 0.92534 0.92504 0.92521 0.92124 0.92822 0.92726 0.91500 0.90713 0.90804 0.90840 0.90708 0.91481 0.92008 0.91757 0.86196 0.88876 0.89470 0.80427 0.89518 0.76873 0.82443 0.89635 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.06 7.85 37.16 0.29 0.35 16 2 C -0.38 0.37 0.53 -90.62 -0.05 0.32 16 3 C -0.14 0.16 7.85 37.16 0.29 0.45 16 4 C -0.13 0.08 7.85 37.16 0.29 0.37 16 5 Si 1.29 -2.91 8.45 -169.99 -1.44 -4.35 16 6 C -0.51 0.89 8.50 101.05 0.86 1.75 16 7 C -0.51 1.01 8.50 101.05 0.86 1.87 16 8 O -0.62 0.91 8.56 -35.23 -0.30 0.60 16 9 C 0.10 -0.30 5.04 37.15 0.19 -0.12 16 10 C -0.12 0.30 4.36 -90.10 -0.39 -0.09 16 11 C 0.09 -0.27 6.44 -8.51 -0.05 -0.32 16 12 N -0.64 -0.83 3.69 -186.58 -0.69 -1.52 16 13 C 0.61 2.82 8.03 -12.63 -0.10 2.72 16 14 O -0.53 -4.56 17.58 5.24 0.09 -4.47 16 15 C -0.15 -0.44 5.98 -104.63 -0.63 -1.06 16 16 C -0.21 -0.05 10.04 29.93 0.30 0.25 16 17 S 0.18 0.04 20.18 -107.50 -2.17 -2.13 16 18 C -0.20 -0.33 5.72 -36.18 -0.21 -0.54 16 19 C -0.04 0.01 2.94 36.01 0.11 0.12 16 20 O -0.54 -0.21 12.82 -35.23 -0.45 -0.66 16 21 Si 0.89 -0.86 26.19 -169.99 -4.45 -5.31 16 22 H -0.23 0.31 7.11 56.52 0.40 0.71 16 23 H -0.23 0.17 7.11 56.52 0.40 0.58 16 24 H -0.23 -0.07 7.11 56.52 0.40 0.33 16 25 C -0.05 -0.16 9.92 -39.02 -0.39 -0.55 16 26 C 0.11 -0.03 8.18 -8.51 -0.07 -0.10 16 27 H 0.05 -0.05 7.79 -51.93 -0.40 -0.46 16 28 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.06 -0.01 7.97 -51.93 -0.41 -0.43 16 30 H 0.06 -0.10 7.79 -51.93 -0.40 -0.51 16 31 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 32 H 0.06 -0.10 7.79 -51.93 -0.40 -0.50 16 33 H 0.06 -0.03 7.96 -51.93 -0.41 -0.44 16 34 H 0.05 -0.01 8.14 -51.93 -0.42 -0.43 16 35 H 0.05 -0.07 7.79 -51.93 -0.40 -0.47 16 36 H 0.07 -0.15 7.48 -51.93 -0.39 -0.54 16 37 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 38 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 39 H 0.07 -0.12 7.79 -51.93 -0.40 -0.53 16 40 H 0.07 -0.14 7.79 -51.93 -0.40 -0.55 16 41 H 0.07 -0.17 7.48 -51.93 -0.39 -0.56 16 42 H 0.06 -0.27 6.88 -51.93 -0.36 -0.63 16 43 H 0.06 -0.31 7.21 -51.93 -0.37 -0.69 16 44 H 0.12 -0.24 8.14 -51.93 -0.42 -0.66 16 45 H 0.09 -0.44 8.10 -51.93 -0.42 -0.86 16 46 H 0.09 -0.37 6.08 -51.93 -0.32 -0.69 16 47 H 0.18 -0.46 4.61 -52.49 -0.24 -0.70 16 48 H 0.09 -0.19 7.96 -51.93 -0.41 -0.60 16 49 H 0.38 -1.65 8.74 45.56 0.40 -1.25 16 50 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 51 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 52 H 0.09 -0.13 7.87 -51.93 -0.41 -0.54 16 LS Contribution 425.96 15.07 6.42 6.42 Total: 0.00 -8.52 425.96 -10.00 -18.51 By element: Atomic # 1 Polarization: -4.20 SS G_CDS: -8.31 Total: -12.50 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 1.30 Total: 5.41 kcal Atomic # 7 Polarization: -0.83 SS G_CDS: -0.69 Total: -1.52 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.66 Total: -4.53 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: -5.89 Total: -9.66 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.17 Total: -2.13 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -8.52 -10.00 -18.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_6894386.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.925 kcal (2) G-P(sol) polarization free energy of solvation -8.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds