Wall clock time and date at job start Sun Mar 7 2021 00:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46895 * 2 1 4 4 C 1.52999 * 109.46974 * 239.99358 * 2 1 3 5 5 Si 1.86306 * 109.46770 * 119.99754 * 2 1 3 6 6 C 1.86295 * 109.47103 * 300.00065 * 5 2 1 7 7 C 1.86299 * 109.46810 * 180.02562 * 5 2 1 8 8 O 1.63101 * 109.46956 * 60.00209 * 5 2 1 9 9 C 1.42902 * 113.99778 * 179.97438 * 8 5 2 10 10 C 1.52992 * 109.47017 * 179.97438 * 9 8 5 11 11 C 1.53506 * 114.20831 * 175.00146 * 10 9 8 12 12 N 1.47063 * 87.98842 * 139.65474 * 11 10 9 13 13 C 1.34770 * 136.05821 * 152.84177 * 12 11 10 14 14 O 1.21638 * 120.00253 * 176.03118 * 13 12 11 15 15 C 1.47191 * 120.00131 * 356.03687 * 13 12 11 16 16 C 1.36012 * 123.45627 * 6.35980 * 15 13 12 17 17 S 1.70453 * 110.81245 * 179.85560 * 16 15 13 18 18 C 1.75501 * 92.44631 * 0.34328 * 17 16 15 19 19 C 1.50699 * 124.71199 * 179.80272 * 18 17 16 20 20 O 1.42905 * 109.47001 * 119.99824 * 19 18 17 21 21 Si 1.86303 * 109.47150 * 0.02562 * 19 18 17 22 22 H 1.48499 * 109.47017 * 179.97438 * 21 19 18 23 23 H 1.48506 * 109.46842 * 299.99855 * 21 19 18 24 24 H 1.48495 * 109.47125 * 59.99732 * 21 19 18 25 25 C 1.32766 * 110.57517 * 359.80427 * 18 17 16 26 26 C 1.47065 * 87.88520 * 332.88124 * 12 11 10 27 27 H 1.08995 * 109.47117 * 300.00191 * 1 2 3 28 28 H 1.09007 * 109.47016 * 60.00189 * 1 2 3 29 29 H 1.09003 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46644 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47435 * 299.99358 * 3 2 1 32 32 H 1.08995 * 109.47394 * 59.99978 * 3 2 1 33 33 H 1.08998 * 109.47332 * 300.00309 * 4 2 1 34 34 H 1.09006 * 109.46974 * 60.00913 * 4 2 1 35 35 H 1.08999 * 109.46931 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.46999 * 180.02562 * 6 5 2 37 37 H 1.09003 * 109.47331 * 300.00065 * 6 5 2 38 38 H 1.08999 * 109.47318 * 60.00367 * 6 5 2 39 39 H 1.09005 * 109.46999 * 299.99888 * 7 5 2 40 40 H 1.08998 * 109.47396 * 59.99850 * 7 5 2 41 41 H 1.09006 * 109.46565 * 180.02562 * 7 5 2 42 42 H 1.08997 * 109.46906 * 59.99789 * 9 8 5 43 43 H 1.08997 * 109.47010 * 299.99963 * 9 8 5 44 44 H 1.09001 * 113.41540 * 41.80007 * 10 9 8 45 45 H 1.09002 * 113.46239 * 24.86849 * 11 10 9 46 46 H 1.09004 * 113.46482 * 254.43509 * 11 10 9 47 47 H 1.07994 * 124.59773 * 359.97295 * 16 15 13 48 48 H 1.08994 * 109.47393 * 239.99786 * 19 18 17 49 49 H 0.96697 * 113.99420 * 179.97438 * 20 19 18 50 50 H 1.08001 * 123.45811 * 179.97438 * 25 18 17 51 51 H 1.09000 * 113.47198 * 141.89930 * 26 12 11 52 52 H 1.09003 * 113.46556 * 272.28025 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 14 2.1510 -0.8782 1.5213 6 6 1.5299 0.0001 3.0423 7 6 4.0139 -0.8775 1.5217 8 8 1.6073 -2.4159 1.5212 9 6 2.0293 -3.1816 2.6516 10 6 1.4634 -4.5992 2.5473 11 6 1.9495 -5.5535 3.6471 12 7 0.5826 -6.0923 3.7115 13 6 0.0177 -7.2666 4.0555 14 8 -1.1935 -7.3784 4.0677 15 6 0.8663 -8.4138 4.4165 16 6 2.2177 -8.3348 4.5481 17 16 2.8739 -9.8483 4.9772 18 6 1.2966 -10.6180 4.9721 19 6 1.0508 -12.0730 5.2778 20 8 0.1825 -12.1823 6.4076 21 14 2.6712 -12.9102 5.6574 22 1 2.4288 -14.3439 5.9592 23 1 3.5739 -12.7966 4.4837 24 1 3.3024 -12.2574 6.8324 25 6 0.3502 -9.7402 4.6616 26 6 0.1036 -4.7863 3.2344 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.1300 -0.7210 -1.2494 36 1 1.8935 -0.5135 3.9323 37 1 1.8932 1.0278 3.0423 38 1 0.4399 0.0001 3.0423 39 1 4.3777 -1.3912 0.6317 40 1 4.3769 0.1502 1.5218 41 1 4.3772 -1.3918 2.4115 42 1 1.6652 -2.7117 3.5651 43 1 3.1182 -3.2255 2.6746 44 1 1.5162 -5.0137 1.5406 45 1 2.2583 -5.0430 4.5593 46 1 2.6857 -6.2780 3.2989 47 1 2.7964 -7.4347 4.4025 48 1 0.5871 -12.5521 4.4156 49 1 -0.0198 -13.0932 6.6613 50 1 -0.6981 -9.9923 4.5983 51 1 -0.7296 -4.8584 2.5354 52 1 -0.0802 -4.0718 4.0369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_6894386.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:39:59 Heat of formation + Delta-G solvation = -86.942919 kcal Electronic energy + Delta-G solvation = -29109.396193 eV Core-core repulsion = 25132.621729 eV Total energy + Delta-G solvation = -3976.774464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71561 -39.65679 -38.54703 -37.43613 -37.18372 -36.78956 -32.65759 -31.16798 -29.32266 -29.00722 -27.81496 -27.54790 -27.33286 -27.24714 -26.62092 -24.73801 -21.95728 -20.92924 -20.38527 -20.18379 -18.68479 -18.40772 -17.98627 -17.59983 -17.20674 -16.77342 -16.39997 -16.08025 -15.86153 -15.68487 -15.30171 -14.84869 -14.81489 -14.74362 -14.46943 -14.27512 -14.07000 -13.89310 -13.83356 -13.65841 -13.54284 -13.52073 -13.33250 -13.24822 -13.10066 -12.92285 -12.90185 -12.68814 -12.46653 -12.39703 -12.36873 -12.14299 -12.00641 -11.95106 -11.66673 -11.63120 -11.31440 -11.23265 -10.91467 -10.48671 -10.22563 -10.01254 -9.98384 -9.90391 -9.47068 -0.39658 0.28818 0.61408 0.77359 1.08665 1.45604 1.47384 1.54552 1.71708 1.84899 1.88240 2.17997 2.20217 2.52659 3.23437 3.32187 3.53626 3.68663 3.89046 3.96389 4.02535 4.15432 4.15608 4.19635 4.32758 4.42176 4.44655 4.47340 4.49787 4.54466 4.61725 4.66160 4.71011 4.80026 4.81661 4.82226 4.84273 4.85183 4.87002 4.88341 4.96702 5.03015 5.11769 5.12221 5.17389 5.22108 5.26188 5.37991 5.44083 5.47873 5.61301 5.67042 5.71646 6.55130 6.76194 6.97063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.390 4.390 3 C -0.141 4.141 4 C -0.136 4.136 5 Si 1.326 2.674 6 C -0.521 4.521 7 C -0.517 4.517 8 O -0.638 6.638 9 C 0.086 3.914 10 C -0.108 4.108 11 C 0.094 3.906 12 N -0.648 5.648 13 C 0.599 3.401 14 O -0.590 6.590 15 C -0.176 4.176 16 C -0.193 4.193 17 S 0.217 5.783 18 C -0.208 4.208 19 C -0.050 4.050 20 O -0.563 6.563 21 Si 0.917 3.083 22 H -0.219 1.219 23 H -0.230 1.230 24 H -0.248 1.248 25 C -0.076 4.076 26 C 0.098 3.902 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.123 0.877 46 H 0.107 0.893 47 H 0.209 0.791 48 H 0.102 0.898 49 H 0.401 0.599 50 H 0.137 0.863 51 H 0.064 0.936 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 0.077 0.496 8.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.431 4.431 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.455 2.545 6 C -0.623 4.623 7 C -0.619 4.619 8 O -0.598 6.598 9 C 0.010 3.990 10 C -0.127 4.127 11 C -0.028 4.028 12 N -0.382 5.382 13 C 0.390 3.610 14 O -0.472 6.472 15 C -0.194 4.194 16 C -0.330 4.330 17 S 0.483 5.517 18 C -0.325 4.325 19 C -0.161 4.161 20 O -0.373 6.373 21 Si 0.735 3.265 22 H -0.141 1.141 23 H -0.153 1.153 24 H -0.171 1.171 25 C -0.105 4.105 26 C -0.024 4.024 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.131 0.869 45 H 0.141 0.859 46 H 0.125 0.875 47 H 0.225 0.775 48 H 0.119 0.881 49 H 0.252 0.748 50 H 0.155 0.845 51 H 0.082 0.918 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.064 -0.660 0.850 10.121 hybrid contribution -2.479 0.856 -0.436 2.659 sum 7.584 0.197 0.414 7.598 Atomic orbital electron populations 1.21542 0.94601 1.01694 1.01599 1.26053 1.00155 1.03079 1.13828 1.21600 1.01339 0.94859 1.01999 1.21536 1.01091 1.00007 0.96718 0.75990 0.62570 0.52603 0.63308 1.27150 1.06725 1.09840 1.18538 1.27079 1.24912 1.04980 1.04909 1.85359 1.79700 1.46489 1.48239 1.22154 0.99883 0.89590 0.87359 1.22965 0.94373 0.95535 0.99798 1.23608 0.84287 0.95043 0.99824 1.49453 1.12648 1.10611 1.65474 1.17415 0.86280 0.81660 0.75677 1.90785 1.16355 1.84207 1.55899 1.20054 0.93341 0.94287 1.11692 1.26457 0.97567 1.05574 1.03437 1.83007 1.06446 0.98102 1.64140 1.23892 0.97270 1.00237 1.11052 1.24237 1.05747 0.93521 0.92607 1.86483 1.68691 1.34467 1.47674 0.85971 0.75545 0.82428 0.82527 1.14084 1.15318 1.17126 1.20979 1.00547 0.90418 0.98572 1.23366 0.98978 0.82330 0.97730 0.92197 0.93777 0.92519 0.91654 0.93530 0.91907 0.92428 0.93821 0.91888 0.90549 0.90713 0.91493 0.91076 0.90710 0.90325 0.90460 0.89173 0.86885 0.85923 0.87494 0.77456 0.88054 0.74777 0.84509 0.91783 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.02 7.85 71.98 0.56 0.54 16 2 C -0.39 0.66 0.53 -10.79 -0.01 0.65 16 3 C -0.14 0.30 7.85 71.98 0.56 0.86 16 4 C -0.14 0.09 7.85 71.98 0.56 0.65 16 5 Si 1.33 -7.31 8.45 68.60 0.58 -6.74 16 6 C -0.52 2.38 8.50 113.37 0.96 3.35 16 7 C -0.52 3.02 8.50 113.37 0.96 3.98 16 8 O -0.64 2.51 8.56 -148.98 -1.28 1.24 16 9 C 0.09 -0.73 5.04 71.98 0.36 -0.36 16 10 C -0.11 0.65 4.36 -10.46 -0.05 0.61 16 11 C 0.09 -0.73 6.44 83.18 0.54 -0.19 16 12 N -0.65 -1.97 3.69 -862.45 -3.18 -5.15 16 13 C 0.60 6.84 8.03 86.60 0.70 7.53 16 14 O -0.59 -12.51 17.58 -4.15 -0.07 -12.58 16 15 C -0.18 -1.26 5.98 -19.87 -0.12 -1.37 16 16 C -0.19 0.10 10.04 67.30 0.68 0.78 16 17 S 0.22 -0.13 20.18 -56.49 -1.14 -1.27 16 18 C -0.21 -0.85 5.72 24.51 0.14 -0.71 16 19 C -0.05 0.01 2.94 71.24 0.21 0.22 16 20 O -0.56 -0.86 12.82 -148.98 -1.91 -2.77 16 21 Si 0.92 -2.51 26.19 68.60 1.80 -0.72 16 22 H -0.22 0.90 7.11 99.48 0.71 1.61 16 23 H -0.23 0.67 7.11 99.48 0.71 1.38 16 24 H -0.25 -0.03 7.11 99.48 0.71 0.67 16 25 C -0.08 -0.66 9.92 22.67 0.22 -0.44 16 26 C 0.10 0.00 8.18 83.18 0.68 0.68 16 27 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 28 H 0.04 0.07 8.14 -2.38 -0.02 0.05 16 29 H 0.06 0.04 7.97 -2.39 -0.02 0.03 16 30 H 0.06 -0.26 7.79 -2.39 -0.02 -0.28 16 31 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 33 H 0.06 -0.01 7.96 -2.39 -0.02 -0.03 16 34 H 0.04 0.04 8.14 -2.38 -0.02 0.03 16 35 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 36 H 0.08 -0.49 7.48 -2.39 -0.02 -0.51 16 37 H 0.07 -0.33 7.79 -2.39 -0.02 -0.35 16 38 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 39 H 0.07 -0.35 7.79 -2.38 -0.02 -0.37 16 40 H 0.07 -0.41 7.79 -2.39 -0.02 -0.43 16 41 H 0.08 -0.63 7.48 -2.38 -0.02 -0.65 16 42 H 0.08 -0.88 6.88 -2.39 -0.02 -0.89 16 43 H 0.09 -1.19 7.21 -2.39 -0.02 -1.21 16 44 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 45 H 0.12 -1.60 8.10 -2.39 -0.02 -1.62 16 46 H 0.11 -1.24 6.08 -2.39 -0.01 -1.25 16 47 H 0.21 -1.65 4.61 -2.91 -0.01 -1.67 16 48 H 0.10 -0.40 7.96 -2.39 -0.02 -0.42 16 49 H 0.40 -3.31 8.74 -74.06 -0.65 -3.96 16 50 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 51 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 52 H 0.10 -0.31 7.87 -2.39 -0.02 -0.33 16 Total: 0.00 -23.65 425.96 2.79 -20.86 By element: Atomic # 1 Polarization: -10.67 SS G_CDS: 1.01 Total: -9.66 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 6.98 Total: 16.78 kcal Atomic # 7 Polarization: -1.97 SS G_CDS: -3.18 Total: -5.15 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -3.26 Total: -14.11 kcal Atomic # 14 Polarization: -9.83 SS G_CDS: 2.38 Total: -7.45 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.14 Total: -1.27 kcal Total: -23.65 2.79 -20.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_6894386.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.081 kcal (2) G-P(sol) polarization free energy of solvation -23.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds