Wall clock time and date at job start Sun Mar 7 2021 00:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36766 * 125.80232 * 2 1 4 4 C 1.47256 * 126.94415 * 359.97438 * 3 2 1 5 5 O 1.21622 * 120.00196 * 359.70090 * 4 3 2 6 6 N 1.34775 * 119.99892 * 179.71029 * 4 3 2 7 7 C 1.47585 * 134.49073 * 179.97438 * 6 4 3 8 8 C 1.53947 * 86.11441 * 155.35639 * 7 6 4 9 9 C 1.53006 * 113.73862 * 137.95352 * 8 7 6 10 10 O 1.42902 * 109.46978 * 174.99885 * 9 8 7 11 11 Si 1.63096 * 113.99982 * 179.97438 * 10 9 8 12 12 C 1.86298 * 109.47142 * 299.99883 * 11 10 9 13 13 C 1.86299 * 109.47288 * 60.00145 * 11 10 9 14 14 C 1.86301 * 109.47142 * 179.97438 * 11 10 9 15 15 C 1.53000 * 109.47114 * 59.99823 * 14 11 10 16 16 C 1.52995 * 109.47414 * 180.02562 * 14 11 10 17 17 C 1.53005 * 109.46926 * 299.99955 * 14 11 10 18 18 C 1.47577 * 134.49642 * 359.97438 * 6 4 3 19 19 C 1.46686 * 106.11070 * 179.71734 * 3 2 1 20 20 C 1.34487 * 106.33612 * 0.26036 * 19 3 2 21 21 C 1.50696 * 125.57160 * 179.97438 * 20 19 3 22 22 O 1.42899 * 109.47549 * 300.00402 * 21 20 19 23 23 Si 1.86300 * 109.47004 * 180.02562 * 21 20 19 24 24 H 1.48499 * 109.47046 * 60.00228 * 23 21 20 25 25 H 1.48503 * 109.47306 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47289 * 300.00151 * 23 21 20 27 27 N 1.34660 * 125.79743 * 180.16932 * 2 1 3 28 28 H 1.09001 * 109.46854 * 89.99268 * 1 2 3 29 29 H 1.08996 * 109.47214 * 209.99582 * 1 2 3 30 30 H 1.09006 * 109.46808 * 330.00339 * 1 2 3 31 31 H 1.09000 * 113.77328 * 41.05587 * 7 6 4 32 32 H 1.09003 * 113.87223 * 269.66815 * 7 6 4 33 33 H 1.08995 * 113.74302 * 269.15000 * 8 7 6 34 34 H 1.08995 * 109.46794 * 294.99903 * 9 8 7 35 35 H 1.09000 * 109.47314 * 55.00037 * 9 8 7 36 36 H 1.09000 * 109.47204 * 60.00006 * 12 11 10 37 37 H 1.09001 * 109.46871 * 179.97438 * 12 11 10 38 38 H 1.09002 * 109.47091 * 300.00346 * 12 11 10 39 39 H 1.08997 * 109.47237 * 59.99302 * 13 11 10 40 40 H 1.08991 * 109.47558 * 179.97438 * 13 11 10 41 41 H 1.09000 * 109.46789 * 299.99830 * 13 11 10 42 42 H 1.08994 * 109.47332 * 60.00244 * 15 14 11 43 43 H 1.09000 * 109.46992 * 180.02562 * 15 14 11 44 44 H 1.09001 * 109.47122 * 299.99935 * 15 14 11 45 45 H 1.09002 * 109.47306 * 59.99931 * 16 14 11 46 46 H 1.09000 * 109.47338 * 179.97438 * 16 14 11 47 47 H 1.09001 * 109.47279 * 300.00211 * 16 14 11 48 48 H 1.09001 * 109.47381 * 60.00021 * 17 14 11 49 49 H 1.09000 * 109.47123 * 180.02562 * 17 14 11 50 50 H 1.08998 * 109.47410 * 300.00102 * 17 14 11 51 51 H 1.09003 * 113.76916 * 90.33827 * 18 6 4 52 52 H 1.09004 * 113.76688 * 318.94990 * 18 6 4 53 53 H 1.08006 * 126.83178 * 180.22959 * 19 3 2 54 54 H 1.08998 * 109.47066 * 60.00416 * 21 20 19 55 55 H 0.96701 * 114.00431 * 300.00604 * 22 21 20 56 56 H 0.97006 * 124.85430 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8704 2.5155 -0.0005 5 8 0.6841 2.7839 -0.0065 6 7 2.7852 3.5052 0.0054 7 6 2.7140 4.9794 0.0064 8 6 4.1099 4.9418 0.6546 9 6 5.0776 5.9860 0.0939 10 8 6.2993 5.9493 0.8343 11 14 7.4159 7.0238 0.3256 12 6 7.8419 6.6806 -1.4552 13 6 6.7318 8.7499 0.4790 14 6 8.9491 6.8689 1.3725 15 6 9.5111 5.4514 1.2472 16 6 9.9963 7.8772 0.8958 17 6 8.5987 7.1511 2.8349 18 6 4.2602 3.5503 0.0136 19 6 3.6882 0.6150 0.0070 20 6 3.6095 -0.7276 0.0046 21 6 4.7818 -1.6745 0.0093 22 8 5.5817 -1.4480 -1.1531 23 14 4.1613 -3.4311 0.0028 24 1 3.3429 -3.6625 -1.2145 25 1 5.3165 -4.3642 0.0080 26 1 3.3298 -3.6668 1.2104 27 7 2.2947 -1.0922 -0.0032 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8901 0.5138 31 1 1.9379 5.3814 0.6577 32 1 2.7041 5.4212 -0.9900 33 1 4.0876 4.9250 1.7441 34 1 5.2812 5.7669 -0.9542 35 1 4.6315 6.9770 0.1779 36 1 6.9447 6.7716 -2.0675 37 1 8.5878 7.3991 -1.7953 38 1 8.2421 5.6707 -1.5450 39 1 6.4825 8.9506 1.5209 40 1 7.4781 9.4680 0.1395 41 1 5.8346 8.8408 -0.1332 42 1 9.7607 5.2503 0.2055 43 1 10.4079 5.3606 1.8601 44 1 8.7649 4.7333 1.5872 45 1 9.5957 8.8870 0.9854 46 1 10.8932 7.7869 1.5086 47 1 10.2460 7.6767 -0.1461 48 1 7.8525 6.4330 3.1749 49 1 9.4958 7.0609 3.4474 50 1 8.1983 8.1610 2.9243 51 1 4.7047 3.5705 -0.9815 52 1 4.7186 2.8111 0.6706 53 1 4.5891 1.2107 0.0123 54 1 5.3827 -1.5043 0.9026 55 1 5.1105 -1.5814 -1.9869 56 1 1.9733 -2.0075 -0.0063 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_9865296.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:40:53 Heat of formation + Delta-G solvation = -86.183230 kcal Electronic energy + Delta-G solvation = -32165.522000 eV Core-core repulsion = 28006.890843 eV Total energy + Delta-G solvation = -4158.631157 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.209 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.53873 -41.05032 -38.93443 -37.70994 -37.30710 -36.75749 -32.85216 -32.69509 -31.11086 -29.31033 -28.98560 -28.91427 -27.78512 -27.31219 -27.20130 -26.97242 -25.14519 -23.01326 -21.61182 -21.25315 -20.34733 -19.53172 -18.65127 -17.92000 -17.61303 -17.13650 -16.95921 -16.62744 -16.53139 -15.97885 -15.81289 -15.52730 -15.36492 -14.86692 -14.81984 -14.76611 -14.68888 -14.27263 -14.12268 -14.04407 -13.92574 -13.75371 -13.53013 -13.42489 -13.40847 -13.29808 -13.14878 -13.05463 -12.88673 -12.87085 -12.70592 -12.58298 -12.40512 -12.32732 -12.25781 -12.05396 -11.95877 -11.63167 -11.61657 -11.30391 -11.23699 -10.79693 -10.45228 -10.21023 -10.00452 -9.98321 -9.64540 -9.14446 0.65075 1.02995 1.23775 1.35148 1.41427 1.57221 1.76557 1.86553 1.89601 2.17230 2.21169 2.48376 2.56610 3.39693 3.44332 3.62689 3.77619 3.85354 4.01709 4.12261 4.18687 4.19097 4.19667 4.38551 4.44832 4.51019 4.52526 4.55830 4.60028 4.62513 4.64908 4.66343 4.70940 4.80996 4.82954 4.84765 4.86961 4.87435 4.87838 4.88921 4.90349 5.06550 5.09887 5.15404 5.16021 5.22940 5.26613 5.31298 5.41002 5.48008 5.51231 5.62963 5.67325 5.68251 5.72561 5.85547 6.36284 6.66562 6.73624 7.24298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.114 3.886 3 C -0.260 4.260 4 C 0.603 3.397 5 O -0.593 6.593 6 N -0.647 5.647 7 C 0.107 3.893 8 C -0.110 4.110 9 C 0.086 3.914 10 O -0.634 6.634 11 Si 1.325 2.675 12 C -0.519 4.519 13 C -0.522 4.522 14 C -0.385 4.385 15 C -0.137 4.137 16 C -0.141 4.141 17 C -0.137 4.137 18 C 0.106 3.894 19 C -0.138 4.138 20 C -0.026 4.026 21 C -0.045 4.045 22 O -0.544 6.544 23 Si 0.963 3.037 24 H -0.248 1.248 25 H -0.258 1.258 26 H -0.252 1.252 27 N -0.542 5.542 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.044 0.956 50 H 0.058 0.942 51 H 0.104 0.896 52 H 0.092 0.908 53 H 0.162 0.838 54 H 0.137 0.863 55 H 0.389 0.611 56 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.755 -1.571 -1.585 3.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.006 4.006 3 C -0.270 4.270 4 C 0.397 3.603 5 O -0.476 6.476 6 N -0.380 5.380 7 C -0.015 4.015 8 C -0.129 4.129 9 C 0.010 3.990 10 O -0.593 6.593 11 Si 1.454 2.546 12 C -0.620 4.620 13 C -0.623 4.623 14 C -0.427 4.427 15 C -0.194 4.194 16 C -0.198 4.198 17 C -0.194 4.194 18 C -0.016 4.016 19 C -0.161 4.161 20 C -0.135 4.135 21 C -0.156 4.156 22 O -0.350 6.350 23 Si 0.785 3.215 24 H -0.171 1.171 25 H -0.182 1.182 26 H -0.176 1.176 27 N -0.142 5.142 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.077 0.923 51 H 0.122 0.878 52 H 0.110 0.890 53 H 0.179 0.821 54 H 0.155 0.845 55 H 0.239 0.761 56 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 2.119 -2.668 -0.960 3.540 hybrid contribution -0.129 0.429 -0.463 0.645 sum 1.990 -2.239 -1.423 3.316 Atomic orbital electron populations 1.20601 0.86145 1.04515 1.04026 1.20535 0.94280 0.85584 1.00192 1.20152 0.94476 0.91343 1.21046 1.17299 0.83924 0.84340 0.74762 1.90714 1.17795 1.84793 1.54313 1.49791 1.08481 1.06839 1.72935 1.23338 0.96984 0.79237 1.01962 1.23138 0.93150 0.94602 1.01989 1.22155 0.83228 0.99045 0.94595 1.85347 1.33111 1.74513 1.66363 0.76022 0.58786 0.57697 0.62111 1.27112 1.06046 1.05454 1.23436 1.27159 1.07438 1.23059 1.04655 1.25981 1.13668 0.97985 1.05106 1.21538 1.00697 0.95316 1.01821 1.21605 0.98347 0.98560 1.01336 1.21542 1.01181 1.01589 0.95106 1.23658 0.78888 0.97053 1.02008 1.22203 0.95494 0.93070 1.05373 1.20903 0.84631 0.95931 1.12002 1.24482 0.91825 1.06363 0.92964 1.86529 1.39491 1.92994 1.16033 0.85492 0.80290 0.74466 0.81266 1.17141 1.18223 1.17591 1.41734 1.05595 1.08601 1.58303 0.89754 0.89165 0.90107 0.90356 0.87836 0.87390 0.90361 0.90526 0.90801 0.90739 0.90940 0.91326 0.90733 0.90848 0.92027 0.93697 0.92175 0.91980 0.93384 0.91792 0.92318 0.93639 0.92281 0.87782 0.88969 0.82076 0.84498 0.76142 0.73768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.23 9.88 71.24 0.70 0.47 16 2 C 0.11 0.51 7.17 41.78 0.30 0.81 16 3 C -0.26 -1.96 6.28 -19.04 -0.12 -2.08 16 4 C 0.60 6.81 8.04 86.61 0.70 7.51 16 5 O -0.59 -10.61 15.54 -4.10 -0.06 -10.68 16 6 N -0.65 -3.09 3.61 -840.69 -3.03 -6.12 16 7 C 0.11 -0.03 8.40 86.48 0.73 0.69 16 8 C -0.11 0.36 4.20 -10.13 -0.04 0.32 16 9 C 0.09 -0.50 4.98 71.98 0.36 -0.14 16 10 O -0.63 1.95 8.56 -148.98 -1.28 0.68 16 11 Si 1.32 -6.09 8.45 68.60 0.58 -5.51 16 12 C -0.52 2.20 8.50 113.37 0.96 3.17 16 13 C -0.52 1.80 8.50 113.37 0.96 2.76 16 14 C -0.39 0.66 0.53 -10.79 -0.01 0.66 16 15 C -0.14 0.12 7.85 71.98 0.56 0.68 16 16 C -0.14 0.27 7.85 71.98 0.56 0.84 16 17 C -0.14 0.05 7.85 71.98 0.56 0.61 16 18 C 0.11 -0.21 6.80 86.48 0.59 0.37 16 19 C -0.14 -0.38 9.92 23.62 0.23 -0.15 16 20 C -0.03 0.01 6.11 40.98 0.25 0.26 16 21 C -0.04 0.19 2.98 71.23 0.21 0.40 16 22 O -0.54 1.53 12.87 -148.98 -1.92 -0.39 16 23 Si 0.96 -5.02 26.22 68.60 1.80 -3.22 16 24 H -0.25 1.33 7.11 99.48 0.71 2.04 16 25 H -0.26 0.41 7.11 99.48 0.71 1.11 16 26 H -0.25 1.11 7.11 99.48 0.71 1.81 16 27 N -0.54 0.28 5.41 -171.07 -0.93 -0.64 16 28 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.08 0.63 6.47 -2.38 -0.02 0.62 16 31 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.10 -0.41 8.10 -2.39 -0.02 -0.43 16 33 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.08 -0.72 6.91 -2.39 -0.02 -0.73 16 35 H 0.08 -0.65 7.21 -2.39 -0.02 -0.66 16 36 H 0.07 -0.40 7.48 -2.39 -0.02 -0.42 16 37 H 0.07 -0.31 7.79 -2.39 -0.02 -0.32 16 38 H 0.07 -0.27 7.79 -2.39 -0.02 -0.29 16 39 H 0.07 -0.16 7.79 -2.39 -0.02 -0.18 16 40 H 0.07 -0.26 7.79 -2.39 -0.02 -0.28 16 41 H 0.07 -0.34 7.48 -2.39 -0.02 -0.36 16 42 H 0.06 -0.15 7.80 -2.39 -0.02 -0.17 16 43 H 0.04 0.02 8.14 -2.39 -0.02 0.01 16 44 H 0.06 -0.05 7.97 -2.39 -0.02 -0.07 16 45 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 46 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.06 -0.23 7.80 -2.39 -0.02 -0.24 16 48 H 0.06 0.00 7.97 -2.39 -0.02 -0.02 16 49 H 0.04 0.04 8.14 -2.39 -0.02 0.02 16 50 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 51 H 0.10 -0.55 7.89 -2.39 -0.02 -0.57 16 52 H 0.09 -0.23 6.23 -2.39 -0.01 -0.24 16 53 H 0.16 -0.01 5.42 -2.91 -0.02 -0.03 16 54 H 0.14 -0.82 7.96 -2.39 -0.02 -0.84 16 55 H 0.39 -3.34 8.70 -74.06 -0.64 -3.98 16 56 H 0.42 -2.33 6.70 -92.70 -0.62 -2.95 16 Total: 0.00 -19.60 439.60 3.05 -16.55 By element: Atomic # 1 Polarization: -8.22 SS G_CDS: 0.36 Total: -7.86 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 7.52 Total: 17.19 kcal Atomic # 7 Polarization: -2.81 SS G_CDS: -3.96 Total: -6.76 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -3.26 Total: -10.39 kcal Atomic # 14 Polarization: -11.11 SS G_CDS: 2.38 Total: -8.73 kcal Total: -19.60 3.05 -16.55 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_9865296.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.632 kcal (2) G-P(sol) polarization free energy of solvation -19.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds