Wall clock time and date at job start Sun Mar 7 2021 01:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86297 * 109.47013 * 2 1 4 4 C 1.50702 * 109.46841 * 119.99879 * 2 1 3 5 5 C 1.35453 * 126.06553 * 244.97952 * 4 2 1 6 6 N 1.35537 * 108.87115 * 179.97438 * 5 4 2 7 7 C 1.37652 * 108.64067 * 0.24461 * 6 5 4 8 8 C 1.46684 * 126.22806 * 179.76057 * 7 6 5 9 9 O 1.21689 * 119.99555 * 180.02562 * 8 7 6 10 10 N 1.34767 * 120.00109 * 0.02562 * 8 7 6 11 11 C 1.46504 * 120.00038 * 179.97438 * 10 8 7 12 12 H 1.08998 * 112.85161 * 336.20189 * 11 10 8 13 13 C 1.53778 * 113.61317 * 107.50394 * 11 10 8 14 14 C 1.53790 * 87.08138 * 89.11795 * 13 11 10 15 15 H 1.08997 * 113.61206 * 270.88633 * 14 13 11 16 16 C 1.50699 * 113.68962 * 139.99005 * 14 13 11 17 17 C 1.38221 * 119.99458 * 142.46780 * 16 14 13 18 18 C 1.38263 * 120.02086 * 179.97438 * 17 16 14 19 19 C 1.38187 * 120.00814 * 359.97438 * 18 17 16 20 20 C 1.38345 * 119.99400 * 0.02562 * 19 18 17 21 21 Br 1.89103 * 120.01242 * 180.02562 * 20 19 18 22 22 C 1.38237 * 119.99522 * 322.19191 * 16 14 13 23 23 C 1.53779 * 113.61892 * 205.00231 * 11 10 8 24 24 C 1.37870 * 107.53360 * 359.60376 * 7 6 5 25 25 H 0.96697 * 114.00196 * 300.00123 * 1 2 3 26 26 H 1.08993 * 109.47374 * 240.00053 * 2 1 3 27 27 H 1.48498 * 110.00172 * 299.99654 * 3 2 1 28 28 H 1.48502 * 110.00031 * 61.31513 * 3 2 1 29 29 H 1.07998 * 125.56325 * 359.97438 * 5 4 2 30 30 H 0.97001 * 125.67560 * 179.97438 * 6 5 4 31 31 H 0.97004 * 120.00206 * 0.02562 * 10 8 7 32 32 H 1.08999 * 113.61826 * 203.66775 * 13 11 10 33 33 H 1.09005 * 113.61477 * 334.57351 * 13 11 10 34 34 H 1.07999 * 119.98682 * 359.97438 * 17 16 14 35 35 H 1.08004 * 119.99028 * 180.02562 * 18 17 16 36 36 H 1.08009 * 120.00322 * 180.02562 * 19 18 17 37 37 H 1.07995 * 120.00799 * 0.02562 * 22 16 14 38 38 H 1.09006 * 113.61051 * 25.43340 * 23 11 10 39 39 H 1.08997 * 113.61587 * 156.24993 * 23 11 10 40 40 H 1.08007 * 126.45507 * 180.18281 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6337 -0.1499 2.2440 6 7 2.9050 -1.1028 3.1689 7 6 2.3723 -2.2972 2.7394 8 6 2.4454 -3.5820 3.4432 9 8 1.9321 -4.5723 2.9567 10 7 3.0811 -3.6658 4.6286 11 6 3.1537 -4.9490 5.3318 12 1 2.3538 -5.6329 5.0482 13 6 4.5520 -5.5883 5.3041 14 6 4.8498 -4.8044 6.5933 15 1 5.2594 -3.8102 6.4149 16 6 5.6384 -5.5886 7.6103 17 6 6.6041 -4.9578 8.3718 18 6 7.3275 -5.6766 9.3054 19 6 7.0850 -7.0260 9.4778 20 6 6.1185 -7.6579 8.7159 21 35 5.7857 -9.5044 8.9519 22 6 5.3919 -6.9375 7.7854 23 6 3.3340 -4.8088 6.8525 24 6 1.7544 -2.0650 1.5289 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5138 -0.8899 27 1 1.5616 2.4679 -1.2085 28 1 1.5878 2.4586 1.2242 29 1 2.9293 0.8871 2.3052 30 1 3.3964 -0.9666 3.9941 31 1 3.4900 -2.8763 5.0165 32 1 4.5407 -6.6693 5.4432 33 1 5.1581 -5.2763 4.4535 34 1 6.7936 -3.9030 8.2376 35 1 8.0817 -5.1831 9.9005 36 1 7.6499 -7.5874 10.2074 37 1 4.6345 -7.4295 7.1932 38 1 2.9567 -3.8673 7.2520 39 1 2.9883 -5.6761 7.4150 40 1 1.2349 -2.7930 0.9235 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14189268_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:36:33 Heat of formation + Delta-G solvation = 36.499663 kcal Electronic energy + Delta-G solvation = -24602.571333 eV Core-core repulsion = 20817.576930 eV Total energy + Delta-G solvation = -3784.994403 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.041 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.56399 -41.58997 -40.16354 -38.79758 -37.76115 -34.82102 -33.40992 -32.64892 -31.92045 -30.65243 -30.28987 -26.97639 -26.92094 -26.17410 -24.39313 -23.47564 -22.56591 -21.30895 -20.89967 -20.42427 -19.94640 -18.23824 -17.59147 -17.27685 -16.95516 -16.54476 -16.46710 -16.26354 -15.88713 -15.67779 -15.28408 -15.17167 -14.85191 -14.62031 -14.50821 -14.47890 -14.34826 -13.83987 -13.68336 -13.51292 -13.47421 -13.03615 -12.53408 -12.42283 -12.12400 -12.05421 -11.82191 -11.65302 -11.43538 -11.24812 -11.19685 -10.49840 -10.28011 -10.01096 -9.94222 -9.70718 -9.36076 -4.97288 0.00532 0.15296 0.36198 0.61480 1.30322 1.49823 1.57339 1.84379 1.95274 2.00209 2.31434 2.45541 3.23033 3.42779 3.48474 3.50667 3.64635 3.71241 3.76846 3.85181 3.89137 3.99189 3.99554 4.12778 4.27097 4.30509 4.41803 4.51464 4.54843 4.64204 4.72126 4.76798 4.79974 4.83119 4.87578 4.93879 5.02242 5.10913 5.21558 5.33895 5.43623 5.55625 5.69483 5.75592 6.14792 6.34911 6.52992 7.07155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.040 4.040 3 Si 0.683 3.317 4 C -0.208 4.208 5 C 0.036 3.964 6 N -0.536 5.536 7 C -0.059 4.059 8 C 0.593 3.407 9 O -0.520 6.520 10 N -0.716 5.716 11 C 0.121 3.879 12 H 0.110 0.890 13 C -0.144 4.144 14 C -0.073 4.073 15 H 0.099 0.901 16 C -0.066 4.066 17 C -0.101 4.101 18 C -0.110 4.110 19 C -0.095 4.095 20 C -0.087 4.087 21 Br -0.048 7.048 22 C -0.088 4.088 23 C -0.136 4.136 24 C -0.073 4.073 25 H 0.374 0.626 26 H 0.116 0.884 27 H -0.258 1.258 28 H -0.261 1.261 29 H 0.176 0.824 30 H 0.418 0.582 31 H 0.394 0.606 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.936 5.363 3.780 8.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.151 4.151 3 Si 0.584 3.416 4 C -0.215 4.215 5 C -0.101 4.101 6 N -0.132 5.132 7 C -0.171 4.171 8 C 0.381 3.619 9 O -0.395 6.395 10 N -0.367 5.367 11 C 0.016 3.984 12 H 0.128 0.872 13 C -0.183 4.183 14 C -0.092 4.092 15 H 0.117 0.883 16 C -0.067 4.067 17 C -0.120 4.120 18 C -0.129 4.129 19 C -0.115 4.115 20 C -0.166 4.166 21 Br 0.038 6.962 22 C -0.108 4.108 23 C -0.174 4.174 24 C -0.100 4.100 25 H 0.221 0.779 26 H 0.133 0.867 27 H -0.183 1.183 28 H -0.186 1.186 29 H 0.193 0.807 30 H 0.255 0.745 31 H 0.228 0.772 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.371 4.418 3.111 6.950 hybrid contribution -0.390 0.741 1.220 1.480 sum 3.981 5.159 4.331 7.824 Atomic orbital electron populations 1.86614 1.18054 1.79847 1.49098 1.24336 0.83373 1.09982 0.97427 0.95398 0.91277 0.74500 0.80381 1.19844 1.07556 0.95118 0.98998 1.21903 1.02915 0.94730 0.90526 1.41920 1.43983 1.07766 1.19507 1.20383 1.11004 0.85943 0.99785 1.17036 0.77909 0.86757 0.80178 1.90887 1.46292 1.36159 1.66150 1.45533 1.57899 1.11555 1.21674 1.21862 0.98919 0.85670 0.91976 0.87209 1.23588 0.96753 1.00750 0.97172 1.21614 0.94530 0.98933 0.94081 0.88278 1.19666 0.96671 0.93234 0.97138 1.21208 0.95203 1.00197 0.95354 1.21205 0.99728 0.93636 0.98341 1.21179 0.96557 0.95120 0.98616 1.21838 1.01529 0.91518 1.01740 1.96797 1.95517 1.06937 1.96983 1.20975 0.99106 0.93685 0.97036 1.23448 0.94589 1.03952 0.95371 1.21241 0.98999 0.95699 0.94041 0.77870 0.86653 1.18288 1.18572 0.80732 0.74493 0.77208 0.88435 0.90410 0.85424 0.84942 0.84924 0.84840 0.90387 0.88095 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.89 12.88 -35.23 -0.45 -1.34 16 2 C -0.04 0.01 3.02 36.01 0.11 0.12 16 3 Si 0.68 -1.28 30.60 -169.99 -5.20 -6.48 16 4 C -0.21 0.04 5.43 -105.02 -0.57 -0.53 16 5 C 0.04 -0.09 10.45 -16.91 -0.18 -0.27 16 6 N -0.54 1.63 5.99 -9.39 -0.06 1.57 16 7 C -0.06 -0.03 7.06 -81.98 -0.58 -0.61 16 8 C 0.59 1.02 7.79 -12.86 -0.10 0.92 16 9 O -0.52 -3.12 16.48 5.20 0.09 -3.03 16 10 N -0.72 1.32 5.26 -54.33 -0.29 1.03 16 11 C 0.12 -0.18 4.32 -67.12 -0.29 -0.47 16 12 H 0.11 0.05 7.46 -51.93 -0.39 -0.34 16 13 C -0.14 0.28 7.26 -25.92 -0.19 0.09 16 14 C -0.07 0.22 3.85 -90.96 -0.35 -0.13 16 15 H 0.10 -0.44 8.09 -51.93 -0.42 -0.86 16 16 C -0.07 0.09 5.29 -104.63 -0.55 -0.46 16 17 C -0.10 0.17 9.71 -39.58 -0.38 -0.21 16 18 C -0.11 0.14 10.05 -39.59 -0.40 -0.26 16 19 C -0.09 0.02 9.79 -39.56 -0.39 -0.37 16 20 C -0.09 -0.05 6.22 -39.52 -0.25 -0.30 16 21 Br -0.05 -0.05 33.70 -68.01 -2.29 -2.34 16 22 C -0.09 0.03 8.34 -39.56 -0.33 -0.30 16 23 C -0.14 0.42 7.29 -25.92 -0.19 0.23 16 24 C -0.07 -0.13 10.59 -39.12 -0.41 -0.55 16 25 H 0.37 -0.49 8.70 45.56 0.40 -0.09 16 26 H 0.12 -0.06 7.96 -51.93 -0.41 -0.47 16 27 H -0.26 -0.51 7.11 56.52 0.40 -0.11 16 28 H -0.26 0.11 7.11 56.52 0.40 0.51 16 29 H 0.18 -0.94 6.21 -52.49 -0.33 -1.26 16 30 H 0.42 -2.70 8.19 -40.82 -0.33 -3.04 16 31 H 0.39 -1.93 7.83 -40.82 -0.32 -2.25 16 32 H 0.10 -0.17 6.33 -51.93 -0.33 -0.50 16 33 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 34 H 0.13 -0.47 8.05 -52.49 -0.42 -0.89 16 35 H 0.13 -0.42 8.06 -52.48 -0.42 -0.84 16 36 H 0.13 -0.16 8.06 -52.48 -0.42 -0.58 16 37 H 0.13 -0.16 6.68 -52.49 -0.35 -0.51 16 38 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 39 H 0.10 -0.28 7.72 -51.93 -0.40 -0.68 16 40 H 0.15 0.43 8.06 -52.48 -0.42 0.01 16 LS Contribution 359.27 15.07 5.41 5.41 Total: 0.00 -8.94 359.27 -12.46 -21.40 By element: Atomic # 1 Polarization: -8.50 SS G_CDS: -4.62 Total: -13.12 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -5.05 Total: -3.09 kcal Atomic # 7 Polarization: 2.94 SS G_CDS: -0.34 Total: 2.60 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.37 Total: -4.37 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -5.20 Total: -6.48 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -2.29 Total: -2.34 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -8.94 -12.46 -21.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.900 kcal (2) G-P(sol) polarization free energy of solvation -8.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds