Wall clock time and date at job start Sun Mar 7 2021 01:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86297 * 109.47013 * 2 1 4 4 C 1.50702 * 109.46841 * 119.99879 * 2 1 3 5 5 C 1.35453 * 126.06553 * 244.97952 * 4 2 1 6 6 N 1.35537 * 108.87115 * 179.97438 * 5 4 2 7 7 C 1.37652 * 108.64067 * 0.24461 * 6 5 4 8 8 C 1.46684 * 126.22806 * 179.76057 * 7 6 5 9 9 O 1.21689 * 119.99555 * 180.02562 * 8 7 6 10 10 N 1.34767 * 120.00109 * 0.02562 * 8 7 6 11 11 C 1.46504 * 120.00038 * 179.97438 * 10 8 7 12 12 H 1.08998 * 112.85161 * 336.20189 * 11 10 8 13 13 C 1.53778 * 113.61317 * 107.50394 * 11 10 8 14 14 C 1.53790 * 87.08138 * 89.11795 * 13 11 10 15 15 H 1.08997 * 113.61206 * 270.88633 * 14 13 11 16 16 C 1.50699 * 113.68962 * 139.99005 * 14 13 11 17 17 C 1.38221 * 119.99458 * 142.46780 * 16 14 13 18 18 C 1.38263 * 120.02086 * 179.97438 * 17 16 14 19 19 C 1.38187 * 120.00814 * 359.97438 * 18 17 16 20 20 C 1.38345 * 119.99400 * 0.02562 * 19 18 17 21 21 Br 1.89103 * 120.01242 * 180.02562 * 20 19 18 22 22 C 1.38237 * 119.99522 * 322.19191 * 16 14 13 23 23 C 1.53779 * 113.61892 * 205.00231 * 11 10 8 24 24 C 1.37870 * 107.53360 * 359.60376 * 7 6 5 25 25 H 0.96697 * 114.00196 * 300.00123 * 1 2 3 26 26 H 1.08993 * 109.47374 * 240.00053 * 2 1 3 27 27 H 1.48498 * 110.00172 * 299.99654 * 3 2 1 28 28 H 1.48502 * 110.00031 * 61.31513 * 3 2 1 29 29 H 1.07998 * 125.56325 * 359.97438 * 5 4 2 30 30 H 0.97001 * 125.67560 * 179.97438 * 6 5 4 31 31 H 0.97004 * 120.00206 * 0.02562 * 10 8 7 32 32 H 1.08999 * 113.61826 * 203.66775 * 13 11 10 33 33 H 1.09005 * 113.61477 * 334.57351 * 13 11 10 34 34 H 1.07999 * 119.98682 * 359.97438 * 17 16 14 35 35 H 1.08004 * 119.99028 * 180.02562 * 18 17 16 36 36 H 1.08009 * 120.00322 * 180.02562 * 19 18 17 37 37 H 1.07995 * 120.00799 * 0.02562 * 22 16 14 38 38 H 1.09006 * 113.61051 * 25.43340 * 23 11 10 39 39 H 1.08997 * 113.61587 * 156.24993 * 23 11 10 40 40 H 1.08007 * 126.45507 * 180.18281 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6337 -0.1499 2.2440 6 7 2.9050 -1.1028 3.1689 7 6 2.3723 -2.2972 2.7394 8 6 2.4454 -3.5820 3.4432 9 8 1.9321 -4.5723 2.9567 10 7 3.0811 -3.6658 4.6286 11 6 3.1537 -4.9490 5.3318 12 1 2.3538 -5.6329 5.0482 13 6 4.5520 -5.5883 5.3041 14 6 4.8498 -4.8044 6.5933 15 1 5.2594 -3.8102 6.4149 16 6 5.6384 -5.5886 7.6103 17 6 6.6041 -4.9578 8.3718 18 6 7.3275 -5.6766 9.3054 19 6 7.0850 -7.0260 9.4778 20 6 6.1185 -7.6579 8.7159 21 35 5.7857 -9.5044 8.9519 22 6 5.3919 -6.9375 7.7854 23 6 3.3340 -4.8088 6.8525 24 6 1.7544 -2.0650 1.5289 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5138 -0.8899 27 1 1.5616 2.4679 -1.2085 28 1 1.5878 2.4586 1.2242 29 1 2.9293 0.8871 2.3052 30 1 3.3964 -0.9666 3.9941 31 1 3.4900 -2.8763 5.0165 32 1 4.5407 -6.6693 5.4432 33 1 5.1581 -5.2763 4.4535 34 1 6.7936 -3.9030 8.2376 35 1 8.0817 -5.1831 9.9005 36 1 7.6499 -7.5874 10.2074 37 1 4.6345 -7.4295 7.1932 38 1 2.9567 -3.8673 7.2520 39 1 2.9883 -5.6761 7.4150 40 1 1.2349 -2.7930 0.9235 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:36:32 Heat of formation + Delta-G solvation = 37.403758 kcal Electronic energy + Delta-G solvation = -24602.532128 eV Core-core repulsion = 20817.576930 eV Total energy + Delta-G solvation = -3784.955198 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.041 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.51079 -41.47446 -40.16746 -38.78523 -37.79223 -34.84283 -33.34675 -32.58560 -31.83850 -30.61454 -30.23757 -26.92186 -26.75127 -26.07051 -24.35027 -23.37875 -22.47088 -21.30611 -20.83063 -20.34348 -19.85316 -18.12792 -17.59983 -17.26587 -16.82996 -16.51016 -16.42656 -16.15991 -15.89654 -15.66778 -15.18504 -15.09842 -14.76360 -14.54591 -14.45519 -14.43624 -14.26476 -13.85515 -13.52559 -13.45615 -13.44456 -12.93982 -12.44755 -12.38387 -12.04960 -11.92593 -11.80030 -11.56931 -11.37978 -11.32566 -11.22274 -10.47666 -10.28424 -9.96192 -9.84704 -9.62644 -9.29587 -4.82621 0.10274 0.26236 0.35311 0.63574 1.40281 1.55619 1.68719 1.88098 2.09895 2.13743 2.23633 2.57122 3.39376 3.56751 3.60209 3.64019 3.78167 3.83377 3.92254 3.99204 4.04619 4.17661 4.21600 4.27969 4.35869 4.41197 4.55131 4.66155 4.72212 4.72867 4.79359 4.90572 4.93266 4.95080 4.98077 5.03434 5.08421 5.21443 5.34866 5.44522 5.57266 5.59567 5.73244 5.84593 6.34525 6.52147 6.64140 7.04851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.062 4.062 3 Si 0.790 3.210 4 C -0.224 4.224 5 C 0.062 3.938 6 N -0.513 5.513 7 C -0.068 4.068 8 C 0.591 3.409 9 O -0.576 6.576 10 N -0.695 5.695 11 C 0.115 3.885 12 H 0.083 0.917 13 C -0.145 4.145 14 C -0.060 4.060 15 H 0.125 0.875 16 C -0.069 4.069 17 C -0.100 4.100 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.103 4.103 21 Br -0.064 7.064 22 C -0.099 4.099 23 C -0.125 4.125 24 C -0.105 4.105 25 H 0.384 0.616 26 H 0.107 0.893 27 H -0.315 1.315 28 H -0.266 1.266 29 H 0.215 0.785 30 H 0.438 0.562 31 H 0.413 0.587 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.629 8.321 5.397 11.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.170 4.170 3 Si 0.693 3.307 4 C -0.231 4.231 5 C -0.076 4.076 6 N -0.111 5.111 7 C -0.181 4.181 8 C 0.380 3.620 9 O -0.455 6.455 10 N -0.346 5.346 11 C 0.009 3.991 12 H 0.101 0.899 13 C -0.183 4.183 14 C -0.078 4.078 15 H 0.143 0.857 16 C -0.070 4.070 17 C -0.118 4.118 18 C -0.133 4.133 19 C -0.128 4.128 20 C -0.183 4.183 21 Br 0.021 6.979 22 C -0.119 4.119 23 C -0.162 4.162 24 C -0.132 4.132 25 H 0.233 0.767 26 H 0.125 0.875 27 H -0.244 1.244 28 H -0.192 1.192 29 H 0.231 0.769 30 H 0.279 0.721 31 H 0.250 0.750 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.172 0.828 35 H 0.170 0.830 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.108 7.367 4.811 10.711 hybrid contribution -0.940 -0.177 0.660 1.162 sum 5.168 7.191 5.471 10.409 Atomic orbital electron populations 1.86574 1.19518 1.80557 1.49995 1.24776 0.82568 1.12324 0.97367 0.94260 0.89351 0.70313 0.76741 1.19871 1.08898 0.94274 1.00037 1.22380 1.00428 0.95888 0.88951 1.41837 1.42941 1.06258 1.20054 1.20059 1.11880 0.86624 0.99544 1.17257 0.77494 0.86531 0.80758 1.90857 1.48884 1.38029 1.67714 1.45323 1.56623 1.12251 1.20390 1.21860 0.98424 0.85500 0.93317 0.89856 1.23561 0.96221 1.00680 0.97877 1.21626 0.94216 0.99493 0.92481 0.85738 1.19845 0.96918 0.92795 0.97444 1.21550 0.94317 1.01468 0.94496 1.21500 1.00079 0.93143 0.98561 1.21356 0.96641 0.95985 0.98846 1.21943 1.02593 0.90903 1.02828 1.96765 1.95638 1.08418 1.97072 1.21090 0.99257 0.94487 0.97066 1.23376 0.94650 1.04606 0.93609 1.21234 1.00267 0.96639 0.95038 0.76674 0.87515 1.24386 1.19153 0.76903 0.72055 0.74964 0.89104 0.90996 0.82761 0.82983 0.84619 0.84944 0.88764 0.88572 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.64 12.88 -148.98 -1.92 -4.56 16 2 C -0.06 0.00 3.02 71.24 0.22 0.22 16 3 Si 0.79 -3.94 30.60 68.60 2.10 -1.84 16 4 C -0.22 0.10 5.43 -20.12 -0.11 -0.01 16 5 C 0.06 -0.47 10.45 83.48 0.87 0.40 16 6 N -0.51 4.22 5.99 -183.61 -1.10 3.12 16 7 C -0.07 -0.09 7.06 40.35 0.28 0.19 16 8 C 0.59 2.75 7.79 86.45 0.67 3.42 16 9 O -0.58 -8.69 16.48 -4.31 -0.07 -8.76 16 10 N -0.69 2.81 5.26 -444.01 -2.33 0.48 16 11 C 0.11 -0.29 4.32 45.52 0.20 -0.10 16 12 H 0.08 0.27 7.46 -2.39 -0.02 0.26 16 13 C -0.14 0.52 7.26 31.12 0.23 0.75 16 14 C -0.06 0.47 3.85 -11.01 -0.04 0.43 16 15 H 0.12 -1.56 8.09 -2.39 -0.02 -1.58 16 16 C -0.07 0.28 5.29 -19.87 -0.11 0.17 16 17 C -0.10 0.56 9.71 22.27 0.22 0.78 16 18 C -0.11 0.45 10.05 22.26 0.22 0.68 16 19 C -0.11 0.04 9.79 22.28 0.22 0.26 16 20 C -0.10 -0.18 6.22 22.31 0.14 -0.04 16 21 Br -0.06 -0.22 33.70 -20.37 -0.69 -0.91 16 22 C -0.10 0.04 8.34 22.29 0.19 0.22 16 23 C -0.12 0.89 7.29 31.12 0.23 1.11 16 24 C -0.10 -0.58 10.59 22.57 0.24 -0.34 16 25 H 0.38 -0.70 8.70 -74.06 -0.64 -1.34 16 26 H 0.11 0.08 7.96 -2.39 -0.02 0.06 16 27 H -0.32 -1.47 7.11 99.48 0.71 -0.77 16 28 H -0.27 1.05 7.11 99.48 0.71 1.76 16 29 H 0.21 -3.28 6.21 -2.91 -0.02 -3.30 16 30 H 0.44 -7.21 8.19 -92.71 -0.76 -7.97 16 31 H 0.41 -4.97 7.83 -92.70 -0.73 -5.70 16 32 H 0.09 -0.20 6.33 -2.39 -0.02 -0.22 16 33 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 34 H 0.15 -1.72 8.05 -2.91 -0.02 -1.74 16 35 H 0.15 -1.28 8.06 -2.91 -0.02 -1.30 16 36 H 0.14 -0.26 8.06 -2.91 -0.02 -0.29 16 37 H 0.13 -0.14 6.68 -2.91 -0.02 -0.16 16 38 H 0.09 -0.93 8.14 -2.38 -0.02 -0.95 16 39 H 0.10 -0.54 7.72 -2.39 -0.02 -0.56 16 40 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 Total: 0.00 -25.76 359.27 -1.33 -27.09 By element: Atomic # 1 Polarization: -21.77 SS G_CDS: -0.98 Total: -22.75 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 3.66 Total: 8.13 kcal Atomic # 7 Polarization: 7.03 SS G_CDS: -3.44 Total: 3.60 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -1.99 Total: -13.32 kcal Atomic # 14 Polarization: -3.94 SS G_CDS: 2.10 Total: -1.84 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.69 Total: -0.91 kcal Total: -25.76 -1.33 -27.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.496 kcal (2) G-P(sol) polarization free energy of solvation -25.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds