Wall clock time and date at job start Sun Mar 7 2021 01:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35525 * 125.68050 * 2 1 4 4 C 1.35452 * 108.87141 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.06626 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47140 * 244.97831 * 5 4 3 7 7 Si 1.86303 * 109.47317 * 4.97896 * 5 4 3 8 8 C 1.39834 * 107.86432 * 359.74642 * 4 3 2 9 9 C 1.37657 * 125.67335 * 180.02562 * 2 1 3 10 10 C 1.46679 * 126.23375 * 359.97438 * 9 2 1 11 11 O 1.21697 * 119.99941 * 5.29803 * 10 9 2 12 12 N 1.34771 * 119.99784 * 185.29906 * 10 9 2 13 13 C 1.46500 * 119.99919 * 174.96854 * 12 10 9 14 14 H 1.08999 * 112.85090 * 25.61522 * 13 12 10 15 15 C 1.53780 * 113.61468 * 156.80384 * 13 12 10 16 16 C 1.53774 * 87.08114 * 89.11730 * 15 13 12 17 17 H 1.09005 * 113.61850 * 270.88442 * 16 15 13 18 18 C 1.50704 * 113.61426 * 140.06473 * 16 15 13 19 19 C 1.38198 * 119.99411 * 120.00331 * 18 16 15 20 20 C 1.38344 * 119.98802 * 180.02562 * 19 18 16 21 21 Br 1.89109 * 120.00866 * 179.97438 * 20 19 18 22 22 C 1.38301 * 119.98295 * 0.02562 * 20 19 18 23 23 C 1.38243 * 119.99131 * 359.97438 * 22 20 19 24 24 C 1.38222 * 120.00434 * 359.73276 * 23 22 20 25 25 C 1.53778 * 113.61790 * 254.40940 * 13 12 10 26 26 H 1.08996 * 109.47192 * 274.59720 * 1 2 3 27 27 H 1.09003 * 109.46727 * 34.59433 * 1 2 3 28 28 H 1.08995 * 109.47212 * 154.59232 * 1 2 3 29 29 H 1.08004 * 125.56289 * 0.04738 * 3 2 1 30 30 H 1.09002 * 109.47333 * 124.97803 * 5 4 3 31 31 H 0.96696 * 113.99965 * 59.99989 * 6 5 4 32 32 H 1.48500 * 109.99856 * 58.67835 * 7 5 4 33 33 H 1.48504 * 110.00094 * 180.02562 * 7 5 4 34 34 H 1.08001 * 126.45581 * 180.25997 * 8 4 3 35 35 H 0.97002 * 120.00239 * 355.24715 * 12 10 9 36 36 H 1.09004 * 113.61551 * 203.66771 * 15 13 12 37 37 H 1.09003 * 113.61329 * 334.48545 * 15 13 12 38 38 H 1.08000 * 120.00772 * 0.02562 * 19 18 16 39 39 H 1.08003 * 120.00628 * 180.02562 * 22 20 19 40 40 H 1.07996 * 119.99600 * 180.02562 * 23 22 20 41 41 H 1.07997 * 119.99211 * 180.27346 * 24 23 22 42 42 H 1.09000 * 113.61051 * 25.43866 * 25 13 12 43 43 H 1.09004 * 113.61626 * 156.33288 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1008 0.0000 4 6 3.5522 0.7091 -0.0006 5 6 4.7537 1.6187 -0.0002 6 8 5.4772 1.4527 -1.2214 7 14 4.1929 3.3886 0.1536 8 6 3.5779 -0.6890 0.0049 9 6 2.2678 -1.1183 -0.0005 10 6 1.8123 -2.5125 -0.0006 11 8 0.6257 -2.7650 -0.0975 12 7 2.7078 -3.5140 0.1067 13 6 2.2468 -4.9001 0.2176 14 1 1.2636 -5.0560 -0.2265 15 6 3.2941 -5.9350 -0.2261 16 6 3.7988 -5.9306 1.2265 17 1 4.5662 -5.1810 1.4199 18 6 4.1733 -7.2972 1.7396 19 6 5.4644 -7.5455 2.1653 20 6 5.8081 -8.8002 2.6358 21 35 7.5749 -9.1408 3.2177 22 6 4.8596 -9.8057 2.6796 23 6 3.5682 -9.5565 2.2536 24 6 3.2237 -8.3010 1.7892 25 6 2.3824 -5.4830 1.6342 26 1 -0.3633 0.0824 1.0243 27 1 -0.3633 0.8460 -0.5835 28 1 -0.3633 -0.9282 -0.4409 29 1 1.9082 2.1235 0.0007 30 1 5.3992 1.3677 0.8415 31 1 4.9634 1.6590 -2.0141 32 1 3.4120 3.5671 1.4040 33 1 5.3686 4.2958 0.1545 34 1 4.4583 -1.3146 0.0099 35 1 3.6575 -3.3166 0.1145 36 1 2.8632 -6.8872 -0.5357 37 1 4.0173 -5.5449 -0.9422 38 1 6.2050 -6.7601 2.1306 39 1 5.1274 -10.7853 3.0472 40 1 2.8273 -10.3415 2.2881 41 1 2.2138 -8.1053 1.4606 42 1 2.3708 -4.7277 2.4200 43 1 1.7026 -6.3117 1.8323 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_10803934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:36:36 Heat of formation + Delta-G solvation = 45.531818 kcal Electronic energy + Delta-G solvation = -26836.189478 eV Core-core repulsion = 22896.049120 eV Total energy + Delta-G solvation = -3940.140358 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.057 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.57796 -41.46097 -40.13679 -38.75575 -37.63824 -34.97776 -33.77234 -33.16665 -32.18472 -30.75651 -30.06898 -28.32162 -26.72457 -26.43649 -25.63487 -24.06484 -23.49482 -22.43963 -21.28474 -20.63985 -19.94473 -18.85527 -18.14917 -17.67283 -17.08882 -16.76520 -16.66492 -16.46608 -16.15824 -15.84374 -15.55921 -15.48082 -15.10770 -15.05076 -14.66406 -14.52417 -14.41905 -14.28932 -14.07657 -13.51764 -13.47604 -13.41318 -13.23310 -13.12459 -12.91055 -12.34975 -12.26684 -12.03304 -11.93464 -11.92431 -11.56506 -11.38458 -11.18033 -11.15660 -10.29922 -10.19767 -9.86263 -9.70596 -9.62382 -9.26584 -4.94496 0.08509 0.26740 0.38468 0.62678 1.42465 1.52192 1.56307 1.74062 2.05056 2.25360 2.29472 2.56390 3.41707 3.58767 3.60308 3.68961 3.74465 3.85006 3.86713 3.94069 4.04352 4.08694 4.10945 4.24856 4.28128 4.36921 4.40397 4.41199 4.60781 4.65045 4.66899 4.73604 4.75194 4.76902 4.83528 4.92804 4.96538 4.99684 5.11267 5.19949 5.21230 5.35561 5.44614 5.59506 5.67839 5.83120 5.88388 6.16729 6.42465 6.91261 7.08469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.412 5.412 3 C 0.036 3.964 4 C -0.220 4.220 5 C -0.036 4.036 6 O -0.560 6.560 7 Si 0.779 3.221 8 C -0.113 4.113 9 C -0.079 4.079 10 C 0.591 3.409 11 O -0.581 6.581 12 N -0.691 5.691 13 C 0.118 3.882 14 H 0.093 0.907 15 C -0.123 4.123 16 C -0.067 4.067 17 H 0.107 0.893 18 C -0.067 4.067 19 C -0.099 4.099 20 C -0.103 4.103 21 Br -0.062 7.062 22 C -0.108 4.108 23 C -0.113 4.113 24 C -0.104 4.104 25 C -0.140 4.140 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.202 0.798 30 H 0.101 0.899 31 H 0.393 0.607 32 H -0.284 1.284 33 H -0.305 1.305 34 H 0.155 0.845 35 H 0.414 0.586 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.065 0.935 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 1.635 -2.480 4.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.084 5.084 3 C -0.101 4.101 4 C -0.227 4.227 5 C -0.147 4.147 6 O -0.368 6.368 7 Si 0.685 3.315 8 C -0.139 4.139 9 C -0.192 4.192 10 C 0.380 3.620 11 O -0.463 6.463 12 N -0.342 5.342 13 C 0.013 3.987 14 H 0.111 0.889 15 C -0.161 4.161 16 C -0.086 4.086 17 H 0.125 0.875 18 C -0.067 4.067 19 C -0.119 4.119 20 C -0.182 4.182 21 Br 0.024 6.976 22 C -0.128 4.128 23 C -0.132 4.132 24 C -0.122 4.122 25 C -0.179 4.179 26 H 0.099 0.901 27 H 0.133 0.867 28 H 0.108 0.892 29 H 0.219 0.781 30 H 0.118 0.882 31 H 0.243 0.757 32 H -0.211 1.211 33 H -0.233 1.233 34 H 0.173 0.827 35 H 0.252 0.748 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.170 0.830 41 H 0.166 0.834 42 H 0.084 0.916 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.092 1.819 -1.442 3.866 hybrid contribution 0.477 -0.505 0.494 0.852 sum -2.615 1.314 -0.948 3.076 Atomic orbital electron populations 1.22502 0.74833 1.06405 1.04619 1.44033 1.07658 1.04778 1.51896 1.22340 0.89729 0.92561 1.05499 1.19896 0.94236 0.94766 1.13772 1.24453 0.92484 1.08288 0.89474 1.86445 1.42143 1.92174 1.16016 0.94000 0.80243 0.72521 0.84708 1.21414 0.94283 0.95260 1.02940 1.20038 0.90926 0.87585 1.20664 1.17157 0.85294 0.84218 0.75308 1.90762 1.17684 1.85237 1.52576 1.45237 1.10046 1.05249 1.73644 1.21872 0.99397 0.79933 0.97489 0.88905 1.23380 0.97657 0.99348 0.95697 1.21647 0.97506 0.93054 0.96368 0.87504 1.19831 0.92575 0.96108 0.98231 1.21174 0.97254 0.95317 0.98120 1.21959 0.91827 0.97701 1.06698 1.96758 1.15848 1.96101 1.88940 1.21355 0.93215 0.98796 0.99392 1.21473 0.95854 0.98002 0.97821 1.21447 1.00373 0.92417 0.97991 1.23621 0.96405 1.01112 0.96730 0.90084 0.86717 0.89174 0.78130 0.88158 0.75727 1.21125 1.23329 0.82692 0.74848 0.87428 0.89508 0.84599 0.84481 0.83046 0.83401 0.91618 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.12 10.77 127.77 1.38 1.26 16 2 N -0.41 -0.45 3.16 -534.31 -1.69 -2.14 16 3 C 0.04 -0.08 9.94 83.48 0.83 0.74 16 4 C -0.22 0.11 5.43 -20.12 -0.11 0.00 16 5 C -0.04 0.05 3.02 71.24 0.22 0.26 16 6 O -0.56 0.13 12.88 -148.98 -1.92 -1.79 16 7 Si 0.78 -2.81 30.60 68.60 2.10 -0.71 16 8 C -0.11 -0.10 10.29 22.57 0.23 0.14 16 9 C -0.08 -0.26 6.89 40.35 0.28 0.02 16 10 C 0.59 2.97 7.77 86.45 0.67 3.64 16 11 O -0.58 -6.47 14.16 -4.34 -0.06 -6.53 16 12 N -0.69 0.76 5.25 -444.01 -2.33 -1.57 16 13 C 0.12 -0.27 4.32 45.52 0.20 -0.07 16 14 H 0.09 0.12 7.46 -2.39 -0.02 0.10 16 15 C -0.12 0.73 7.29 31.12 0.23 0.95 16 16 C -0.07 0.33 3.87 -10.92 -0.04 0.29 16 17 H 0.11 -0.66 8.09 -2.38 -0.02 -0.68 16 18 C -0.07 0.13 5.29 -19.87 -0.11 0.03 16 19 C -0.10 -0.07 9.45 22.29 0.21 0.14 16 20 C -0.10 -0.26 6.22 22.31 0.14 -0.12 16 21 Br -0.06 -0.22 33.70 -20.37 -0.69 -0.91 16 22 C -0.11 -0.08 9.79 22.29 0.22 0.14 16 23 C -0.11 0.25 10.05 22.27 0.22 0.47 16 24 C -0.10 0.32 8.63 22.27 0.19 0.51 16 25 C -0.14 0.48 7.27 31.21 0.23 0.71 16 26 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.11 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.09 0.24 5.97 -2.39 -0.01 0.23 16 29 H 0.20 -1.85 6.21 -2.91 -0.02 -1.87 16 30 H 0.10 0.04 7.96 -2.39 -0.02 0.02 16 31 H 0.39 -3.16 8.70 -74.06 -0.64 -3.80 16 32 H -0.28 -0.27 7.11 99.48 0.71 0.44 16 33 H -0.31 -1.45 7.11 99.48 0.71 -0.74 16 34 H 0.16 -0.40 7.45 -2.91 -0.02 -0.42 16 35 H 0.41 -2.25 7.60 -92.71 -0.70 -2.96 16 36 H 0.11 -0.74 7.73 -2.39 -0.02 -0.76 16 37 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.14 -0.15 8.05 -2.91 -0.02 -0.17 16 39 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 40 H 0.15 -0.99 8.06 -2.91 -0.02 -1.01 16 41 H 0.15 -1.04 6.65 -2.91 -0.02 -1.06 16 42 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.10 -0.52 6.32 -2.39 -0.02 -0.53 16 Total: 0.00 -19.97 377.13 0.15 -19.82 By element: Atomic # 1 Polarization: -15.04 SS G_CDS: -0.25 Total: -15.29 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 4.98 Total: 9.11 kcal Atomic # 7 Polarization: 0.31 SS G_CDS: -4.02 Total: -3.71 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -1.98 Total: -8.32 kcal Atomic # 14 Polarization: -2.81 SS G_CDS: 2.10 Total: -0.71 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.69 Total: -0.91 kcal Total: -19.97 0.15 -19.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_10803934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.357 kcal (2) G-P(sol) polarization free energy of solvation -19.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds