Wall clock time and date at job start Sun Mar 7 2021 01:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86296 * 109.47159 * 2 1 4 4 C 1.50703 * 109.47104 * 120.00192 * 2 1 3 5 5 C 1.37849 * 119.89325 * 64.99814 * 4 2 1 6 6 C 1.39661 * 119.87874 * 180.02562 * 5 4 2 7 7 C 1.47698 * 120.16523 * 180.02562 * 6 5 4 8 8 O 1.21573 * 119.99926 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00076 * 359.72572 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27913 * 9 7 6 11 11 H 1.08995 * 112.84849 * 25.32788 * 10 9 7 12 12 C 1.53784 * 113.61339 * 156.52596 * 10 9 7 13 13 C 1.53783 * 87.07951 * 89.11076 * 12 10 9 14 14 H 1.08993 * 113.61831 * 270.88309 * 13 12 10 15 15 C 1.50700 * 113.61275 * 140.06118 * 13 12 10 16 16 C 1.38224 * 119.99678 * 299.73059 * 15 13 12 17 17 C 1.38266 * 120.01754 * 179.76713 * 16 15 13 18 18 C 1.38189 * 120.01160 * 0.50231 * 17 16 15 19 19 C 1.38347 * 119.99114 * 359.74912 * 18 17 16 20 20 Br 1.89102 * 120.01130 * 179.97438 * 19 18 17 21 21 C 1.38245 * 119.99554 * 119.99828 * 15 13 12 22 22 C 1.53782 * 113.60882 * 254.13227 * 10 9 7 23 23 C 1.39826 * 119.66774 * 0.27308 * 6 5 4 24 24 F 1.35092 * 120.11054 * 179.70330 * 23 6 5 25 25 C 1.38320 * 119.77494 * 359.49385 * 23 6 5 26 26 C 1.38198 * 120.11771 * 0.48799 * 25 23 6 27 27 H 0.96698 * 114.00406 * 299.99744 * 1 2 3 28 28 H 1.09003 * 109.47481 * 239.99799 * 2 1 3 29 29 H 1.48498 * 109.99955 * 178.68395 * 3 2 1 30 30 H 1.48503 * 109.99878 * 299.99804 * 3 2 1 31 31 H 1.08000 * 120.06222 * 359.97438 * 5 4 2 32 32 H 0.97000 * 119.99736 * 0.27188 * 9 7 6 33 33 H 1.08997 * 113.61251 * 203.66437 * 12 10 9 34 34 H 1.09000 * 113.61257 * 334.48649 * 12 10 9 35 35 H 1.07993 * 119.98572 * 359.97438 * 16 15 13 36 36 H 1.08001 * 119.98904 * 180.23134 * 17 16 15 37 37 H 1.08006 * 120.00646 * 179.72862 * 18 17 16 38 38 H 1.08002 * 120.00120 * 0.02562 * 21 15 13 39 39 H 1.08989 * 113.61694 * 25.43599 * 22 10 9 40 40 H 1.09002 * 113.61061 * 156.33834 * 22 10 9 41 41 H 1.07995 * 119.93871 * 180.22472 * 25 23 6 42 42 H 1.08008 * 119.82753 * 179.74068 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.6841 -2.0565 1.3956 6 6 2.1493 -2.7145 2.5363 7 6 1.8885 -4.1567 2.7194 8 8 2.2945 -4.7263 3.7138 9 7 1.1953 -4.8399 1.7872 10 6 0.9314 -6.2691 1.9718 11 1 0.9334 -6.5679 3.0200 12 6 -0.2915 -6.7758 1.1891 13 6 0.6689 -7.0497 0.0197 14 1 0.7935 -6.1999 -0.6512 15 6 0.3786 -8.3350 -0.7115 16 6 0.4286 -9.5404 -0.0369 17 6 0.1576 -10.7195 -0.7062 18 6 -0.1532 -10.6943 -2.0525 19 6 -0.1982 -9.4886 -2.7294 20 35 -0.6227 -9.4535 -4.5718 21 6 0.0678 -8.3089 -2.0583 22 6 1.7878 -7.1749 1.0713 23 6 2.8587 -2.0000 3.5065 24 9 3.3076 -2.6262 4.6162 25 6 3.1030 -0.6508 3.3242 26 6 2.6388 -0.0088 2.1918 27 1 -0.3934 0.4416 0.7650 28 1 1.7924 -0.5139 -0.8900 29 1 3.5345 1.7702 0.0320 30 1 1.5614 2.4678 -1.2085 31 1 1.1309 -2.6011 0.6447 32 1 0.8710 -4.3853 0.9940 33 1 -0.7360 -7.6779 1.6096 34 1 -1.0275 -5.9998 0.9787 35 1 0.6760 -9.5608 1.0141 36 1 0.1930 -11.6607 -0.1778 37 1 -0.3606 -11.6158 -2.5763 38 1 0.0334 -7.3675 -2.5865 39 1 2.7299 -6.7207 0.7647 40 1 1.9108 -8.1859 1.4597 41 1 3.6537 -0.0971 4.0702 42 1 2.8286 1.0458 2.0563 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_12335834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:37:00 Heat of formation + Delta-G solvation = -19.889718 kcal Electronic energy + Delta-G solvation = -28613.065571 eV Core-core repulsion = 24293.371736 eV Total energy + Delta-G solvation = -4319.693835 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.037 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -50.02342 -41.80686 -40.88460 -39.95399 -38.81939 -37.42444 -34.93269 -33.28210 -32.72581 -32.30725 -31.74548 -30.12360 -26.74731 -26.68430 -26.56372 -25.28467 -23.61106 -23.33690 -22.38525 -21.71096 -20.16120 -19.22442 -18.47624 -18.27224 -17.98209 -17.34661 -17.00147 -16.92361 -16.50852 -16.22622 -16.17077 -15.89674 -15.82512 -15.65921 -15.14250 -15.01758 -14.64530 -14.55928 -14.44075 -14.37228 -14.23634 -13.68852 -13.55922 -13.44217 -13.18120 -12.93655 -12.84742 -12.35500 -12.17100 -12.05167 -11.95228 -11.87992 -11.57858 -11.39090 -11.23771 -11.18725 -10.46313 -10.42192 -10.14359 -9.87071 -9.83582 -9.62991 -4.96482 -0.51174 -0.03907 0.07642 0.26066 0.62049 1.31800 1.57516 1.67778 1.88719 2.02960 2.45956 2.55422 3.03995 3.34777 3.38557 3.46029 3.57051 3.58004 3.65639 3.67911 3.84951 3.92244 3.99917 4.06057 4.09840 4.10637 4.26969 4.39565 4.42874 4.55172 4.60330 4.64555 4.73306 4.75928 4.77180 4.85684 4.91182 4.94201 4.94991 4.97685 5.08392 5.13616 5.20040 5.34395 5.42155 5.58240 5.59477 5.82076 6.32217 6.80035 7.01717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.066 4.066 3 Si 0.769 3.231 4 C -0.135 4.135 5 C -0.025 4.025 6 C -0.189 4.189 7 C 0.557 3.443 8 O -0.570 6.570 9 N -0.692 5.692 10 C 0.113 3.887 11 H 0.088 0.912 12 C -0.122 4.122 13 C -0.066 4.066 14 H 0.110 0.890 15 C -0.067 4.067 16 C -0.105 4.105 17 C -0.113 4.113 18 C -0.108 4.108 19 C -0.103 4.103 20 Br -0.061 7.061 21 C -0.097 4.097 22 C -0.141 4.141 23 C 0.134 3.866 24 F -0.136 7.136 25 C -0.152 4.152 26 C -0.049 4.049 27 H 0.397 0.603 28 H 0.118 0.882 29 H -0.282 1.282 30 H -0.303 1.303 31 H 0.157 0.843 32 H 0.414 0.586 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.168 0.832 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.307 4.504 -0.432 5.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.176 4.176 3 Si 0.675 3.325 4 C -0.135 4.135 5 C -0.044 4.044 6 C -0.193 4.193 7 C 0.345 3.655 8 O -0.449 6.449 9 N -0.344 5.344 10 C 0.008 3.992 11 H 0.106 0.894 12 C -0.159 4.159 13 C -0.084 4.084 14 H 0.128 0.872 15 C -0.068 4.068 16 C -0.123 4.123 17 C -0.132 4.132 18 C -0.127 4.127 19 C -0.182 4.182 20 Br 0.024 6.976 21 C -0.117 4.117 22 C -0.180 4.180 23 C 0.113 3.887 24 F -0.115 7.115 25 C -0.170 4.170 26 C -0.067 4.067 27 H 0.248 0.752 28 H 0.136 0.864 29 H -0.209 1.209 30 H -0.231 1.231 31 H 0.175 0.825 32 H 0.253 0.747 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.085 0.915 40 H 0.121 0.879 41 H 0.186 0.814 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.623 4.345 -1.353 4.831 hybrid contribution 0.314 -0.835 -0.024 0.892 sum -1.308 3.510 -1.377 3.991 Atomic orbital electron populations 1.86497 1.16708 1.82060 1.50666 1.25097 0.85590 1.10342 0.96579 0.93860 0.78046 0.75148 0.85411 1.20475 1.00668 0.94301 0.98076 1.21188 0.94691 0.94252 0.94254 1.20041 1.07056 0.93727 0.98473 1.18314 0.77852 0.86633 0.82680 1.90843 1.52523 1.71010 1.30572 1.45444 1.55502 1.09783 1.23715 1.21908 0.97392 0.79660 1.00229 0.89361 1.23377 0.95595 1.02730 0.94235 1.21649 0.96845 0.94834 0.95090 0.87178 1.19818 0.98632 0.95533 0.92769 1.21445 0.97959 0.91653 1.01262 1.21463 0.98358 0.99758 0.93608 1.21351 0.99186 0.96783 0.95410 1.21961 1.07984 0.97105 0.91138 1.96758 1.93014 1.99289 1.08494 1.21177 0.98863 0.97164 0.94514 1.23619 0.97482 1.00965 0.95925 1.18215 0.95609 0.91792 0.83056 1.91559 1.86550 1.83022 1.50348 1.21400 1.03198 0.91453 1.00991 1.21386 0.93275 1.00893 0.91118 0.75224 0.86426 1.20901 1.23101 0.82525 0.74711 0.87528 0.89207 0.83586 0.83139 0.84479 0.84413 0.91547 0.87926 0.81449 0.81371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.72 12.83 -148.98 -1.91 1.81 16 2 C -0.07 0.50 2.80 71.24 0.20 0.69 16 3 Si 0.77 -5.89 29.79 68.60 2.04 -3.85 16 4 C -0.13 0.86 5.35 -19.90 -0.11 0.75 16 5 C -0.03 0.11 9.17 22.52 0.21 0.31 16 6 C -0.19 -0.45 5.88 -20.05 -0.12 -0.57 16 7 C 0.56 3.52 7.77 86.74 0.67 4.20 16 8 O -0.57 -9.02 14.96 -3.95 -0.06 -9.08 16 9 N -0.69 0.88 5.21 -443.03 -2.31 -1.43 16 10 C 0.11 -0.17 4.30 45.52 0.20 0.02 16 11 H 0.09 0.26 7.50 -2.39 -0.02 0.25 16 12 C -0.12 0.73 7.29 31.12 0.23 0.95 16 13 C -0.07 0.35 3.87 -10.92 -0.04 0.30 16 14 H 0.11 -0.80 8.09 -2.39 -0.02 -0.82 16 15 C -0.07 0.14 5.29 -19.87 -0.11 0.04 16 16 C -0.11 0.29 8.63 22.27 0.19 0.49 16 17 C -0.11 0.23 10.05 22.26 0.22 0.45 16 18 C -0.11 -0.07 9.79 22.28 0.22 0.15 16 19 C -0.10 -0.23 6.22 22.31 0.14 -0.09 16 20 Br -0.06 -0.19 33.70 -20.37 -0.69 -0.88 16 21 C -0.10 -0.02 9.45 22.29 0.21 0.20 16 22 C -0.14 0.40 7.27 31.21 0.23 0.63 16 23 C 0.13 0.57 7.29 22.67 0.17 0.74 16 24 F -0.14 -1.56 15.55 44.97 0.70 -0.86 16 25 C -0.15 0.48 10.01 22.28 0.22 0.70 16 26 C -0.05 0.36 8.66 22.31 0.19 0.55 16 27 H 0.40 -5.68 8.70 -74.06 -0.64 -6.32 16 28 H 0.12 -0.85 7.96 -2.39 -0.02 -0.87 16 29 H -0.28 0.81 7.11 99.48 0.71 1.51 16 30 H -0.30 -0.37 7.11 99.48 0.71 0.34 16 31 H 0.16 -1.39 6.41 -2.91 -0.02 -1.41 16 32 H 0.41 -3.03 6.74 -92.71 -0.62 -3.65 16 33 H 0.11 -0.70 7.73 -2.39 -0.02 -0.72 16 34 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H 0.15 -0.93 6.65 -2.91 -0.02 -0.95 16 36 H 0.15 -0.93 8.06 -2.91 -0.02 -0.95 16 37 H 0.14 -0.16 8.06 -2.91 -0.02 -0.19 16 38 H 0.14 -0.27 8.05 -2.91 -0.02 -0.30 16 39 H 0.07 -0.03 8.14 -2.39 -0.02 -0.04 16 40 H 0.10 -0.40 6.31 -2.39 -0.02 -0.42 16 41 H 0.17 -1.22 8.06 -2.91 -0.02 -1.24 16 42 H 0.17 -2.20 4.89 -2.91 -0.01 -2.22 16 Total: 0.00 -23.02 374.81 0.57 -22.46 By element: Atomic # 1 Polarization: -18.56 SS G_CDS: -0.13 Total: -18.69 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 2.92 Total: 10.53 kcal Atomic # 7 Polarization: 0.88 SS G_CDS: -2.31 Total: -1.43 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -1.97 Total: -7.27 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.70 Total: -0.86 kcal Atomic # 14 Polarization: -5.89 SS G_CDS: 2.04 Total: -3.85 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -0.69 Total: -0.88 kcal Total: -23.02 0.57 -22.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_12335834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.566 kcal (2) G-P(sol) polarization free energy of solvation -23.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds