Wall clock time and date at job start Sun Mar 7 2021 01:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.46993 * 2 1 4 4 C 1.50700 * 109.46785 * 240.00182 * 2 1 3 5 5 C 1.38233 * 119.99995 * 299.99791 * 4 2 1 6 6 C 1.38237 * 119.99865 * 179.97438 * 5 4 2 7 7 C 1.38239 * 120.00174 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99893 * 179.97438 * 7 6 5 9 9 C 1.50711 * 109.46782 * 89.99978 * 8 7 6 10 10 O 1.21270 * 120.00254 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99583 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99653 * 179.97438 * 11 9 8 13 13 H 1.09002 * 112.84935 * 334.66222 * 12 11 9 14 14 C 1.53786 * 113.61643 * 105.85894 * 12 11 9 15 15 C 1.53962 * 87.01719 * 89.22773 * 14 12 11 16 16 H 1.09002 * 113.61454 * 270.79954 * 15 14 12 17 17 C 1.50699 * 113.66451 * 139.93336 * 15 14 12 18 18 C 1.38219 * 119.99258 * 142.43622 * 17 15 14 19 19 C 1.38267 * 120.01760 * 179.97438 * 18 17 15 20 20 C 1.38189 * 120.01027 * 0.02562 * 19 18 17 21 21 C 1.38345 * 119.98999 * 0.02562 * 20 19 18 22 22 Br 1.89109 * 120.00895 * 180.02562 * 21 20 19 23 23 C 1.38241 * 119.99604 * 322.16641 * 17 15 14 24 24 C 1.53781 * 113.61305 * 203.46742 * 12 11 9 25 25 C 1.38232 * 119.99519 * 0.24742 * 7 6 5 26 26 C 1.38234 * 120.00377 * 359.47101 * 25 7 6 27 27 H 0.96692 * 114.00319 * 59.99537 * 1 2 3 28 28 H 1.08998 * 109.47589 * 120.00250 * 2 1 3 29 29 H 1.48499 * 109.99871 * 60.00377 * 3 2 1 30 30 H 1.48504 * 109.99482 * 181.32194 * 3 2 1 31 31 H 1.08000 * 120.00315 * 359.97438 * 5 4 2 32 32 H 1.08005 * 120.00024 * 179.97438 * 6 5 4 33 33 H 1.08992 * 109.47548 * 330.00002 * 8 7 6 34 34 H 1.08997 * 109.46989 * 209.99522 * 8 7 6 35 35 H 0.96995 * 120.00200 * 359.97438 * 11 9 8 36 36 H 1.08993 * 113.61491 * 203.74894 * 14 12 11 37 37 H 1.09000 * 113.61138 * 334.65232 * 14 12 11 38 38 H 1.07997 * 119.99050 * 359.97438 * 18 17 15 39 39 H 1.08003 * 119.98881 * 180.02562 * 19 18 17 40 40 H 1.08000 * 120.00311 * 179.97438 * 20 19 18 41 41 H 1.08000 * 120.00462 * 0.02562 * 23 17 15 42 42 H 1.09001 * 113.61695 * 25.34675 * 24 12 11 43 43 H 1.08997 * 113.61223 * 156.25258 * 24 12 11 44 44 H 1.08004 * 119.99338 * 179.72642 * 25 7 6 45 45 H 1.07997 * 120.00257 * 180.27250 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7104 -1.2305 5 6 1.5973 -2.0338 -1.4493 6 6 2.0576 -2.6853 -2.5783 7 6 2.8523 -2.0134 -3.4883 8 6 3.3545 -2.7238 -4.7188 9 6 2.3616 -2.5504 -5.8393 10 8 1.3461 -1.9132 -5.6565 11 7 2.6019 -3.1044 -7.0442 12 6 1.6366 -2.9363 -8.1332 13 1 0.6228 -2.7549 -7.7760 14 6 2.0951 -1.9445 -9.2154 15 6 2.7578 -3.1428 -9.9191 16 1 3.7838 -3.3245 -9.5988 17 6 2.6077 -3.1225 -11.4184 18 6 3.6483 -3.5477 -12.2228 19 6 3.5109 -3.5298 -13.5985 20 6 2.3334 -3.0862 -14.1698 21 6 1.2921 -2.6596 -13.3651 22 35 -0.3197 -2.0532 -14.1464 23 6 1.4274 -2.6839 -11.9890 24 6 1.7239 -4.0323 -9.2085 25 6 3.1908 -0.6917 -3.2666 26 6 2.7258 -0.0385 -2.1406 27 1 -0.3933 0.4417 -0.7649 28 1 1.7924 -0.5138 0.8899 29 1 1.5615 2.4679 1.2085 30 1 3.5346 1.7702 -0.0322 31 1 0.9768 -2.5589 -0.7381 32 1 1.7970 -3.7194 -2.7490 33 1 3.4756 -3.7850 -4.5017 34 1 4.3146 -2.3017 -5.0155 35 1 3.4139 -3.6144 -7.1903 36 1 1.2737 -1.5054 -9.7814 37 1 2.8060 -1.2016 -8.8537 38 1 4.5688 -3.8940 -11.7766 39 1 4.3241 -3.8625 -14.2266 40 1 2.2265 -3.0719 -15.2444 41 1 0.6130 -2.3554 -11.3603 42 1 2.1356 -4.9724 -8.8413 43 1 0.8009 -4.1649 -9.7727 44 1 3.8153 -0.1681 -3.9754 45 1 2.9867 0.9955 -1.9696 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:37:05 Heat of formation + Delta-G solvation = 16.269693 kcal Electronic energy + Delta-G solvation = -27468.078520 eV Core-core repulsion = 23463.869032 eV Total energy + Delta-G solvation = -4004.209489 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.062 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.63572 -40.83927 -40.04657 -38.79033 -37.60882 -34.62741 -33.96494 -33.28223 -31.93386 -31.80025 -30.24386 -29.65935 -26.69662 -26.48162 -25.49829 -23.80352 -23.55910 -22.61992 -22.22446 -21.34429 -20.10549 -18.47453 -18.34686 -17.77838 -17.28341 -16.94509 -16.60437 -16.41322 -16.21298 -16.14926 -15.94322 -15.56166 -15.15491 -15.08336 -14.71969 -14.62487 -14.49087 -14.44300 -14.23332 -14.04561 -13.51390 -13.43508 -13.31174 -13.04546 -12.86935 -12.74836 -12.34877 -12.26065 -11.99420 -11.98047 -11.86819 -11.69494 -11.52706 -11.31523 -11.17396 -10.96645 -10.45337 -10.04872 -9.86863 -9.82282 -9.60862 -9.59414 -5.01148 0.11742 0.24838 0.27958 0.46249 0.64535 1.30133 1.59919 1.66108 1.91970 2.15627 2.58863 2.80136 3.46529 3.49505 3.63521 3.65305 3.70777 3.80625 3.85223 3.92291 3.96833 4.05844 4.06935 4.07169 4.24896 4.30890 4.37660 4.43384 4.46722 4.49009 4.59639 4.63721 4.72711 4.73282 4.76827 4.87174 4.96539 5.00711 5.02912 5.03850 5.09704 5.17089 5.24065 5.38356 5.38829 5.52824 5.54448 5.60048 5.66795 5.86164 6.02843 6.59401 6.71116 7.31414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.077 4.077 3 Si 0.773 3.227 4 C -0.128 4.128 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.072 4.072 8 C -0.098 4.098 9 C 0.516 3.484 10 O -0.577 6.577 11 N -0.701 5.701 12 C 0.118 3.882 13 H 0.078 0.922 14 C -0.144 4.144 15 C -0.061 4.061 16 H 0.123 0.877 17 C -0.069 4.069 18 C -0.101 4.101 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.103 4.103 22 Br -0.064 7.064 23 C -0.099 4.099 24 C -0.126 4.126 25 C -0.110 4.110 26 C -0.124 4.124 27 H 0.393 0.607 28 H 0.105 0.895 29 H -0.298 1.298 30 H -0.281 1.281 31 H 0.121 0.879 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.419 0.581 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.142 0.858 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 -3.095 -3.666 8.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.186 4.186 3 Si 0.679 3.321 4 C -0.129 4.129 5 C -0.127 4.127 6 C -0.134 4.134 7 C -0.072 4.072 8 C -0.137 4.137 9 C 0.303 3.697 10 O -0.455 6.455 11 N -0.353 5.353 12 C 0.012 3.988 13 H 0.096 0.904 14 C -0.183 4.183 15 C -0.079 4.079 16 H 0.141 0.859 17 C -0.070 4.070 18 C -0.120 4.120 19 C -0.133 4.133 20 C -0.129 4.129 21 C -0.182 4.182 22 Br 0.021 6.979 23 C -0.119 4.119 24 C -0.164 4.164 25 C -0.128 4.128 26 C -0.142 4.142 27 H 0.243 0.757 28 H 0.123 0.877 29 H -0.227 1.227 30 H -0.208 1.208 31 H 0.139 0.861 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.256 0.744 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.160 0.840 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.141 -2.147 -2.872 7.111 hybrid contribution 0.267 -0.825 0.213 0.893 sum 6.409 -2.972 -2.660 7.548 Atomic orbital electron populations 1.86442 1.17527 1.82219 1.50386 1.25220 0.85113 1.11076 0.97238 0.93596 0.78028 0.75699 0.84753 1.20404 0.99700 0.95370 0.97398 1.21076 0.99335 0.94349 0.97922 1.21244 0.97274 1.00687 0.94195 1.19592 0.97691 0.94513 0.95426 1.20759 0.98968 1.04391 0.89574 1.21003 0.86968 0.77852 0.83847 1.90746 1.29883 1.41823 1.83072 1.45564 1.24687 1.55042 1.10050 1.21749 0.93348 0.97320 0.86411 0.90363 1.23567 1.01018 0.96822 0.96896 1.21660 1.00851 0.96779 0.88653 0.85858 1.19881 0.92991 0.98022 0.96069 1.21551 0.99333 0.97635 0.93439 1.21496 0.97329 0.98690 0.95796 1.21348 0.92801 0.98254 1.00479 1.21941 0.93628 1.06884 0.95792 1.96761 1.29864 1.88187 1.83044 1.21083 0.98826 0.99489 0.92470 1.23355 0.99929 0.97701 0.95439 1.21239 1.00046 0.94138 0.97346 1.21169 0.98280 0.99986 0.94741 0.75687 0.87713 1.22653 1.20777 0.86054 0.85046 0.85287 0.84866 0.74378 0.89523 0.90959 0.82904 0.83052 0.84616 0.84950 0.88871 0.88989 0.83996 0.84228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.22 12.77 -148.98 -1.90 -4.12 16 2 C -0.08 -0.20 2.82 71.24 0.20 0.00 16 3 Si 0.77 0.12 29.79 68.60 2.04 2.17 16 4 C -0.13 -0.45 5.39 -19.87 -0.11 -0.55 16 5 C -0.11 -0.50 9.61 22.27 0.21 -0.28 16 6 C -0.12 -0.31 9.70 22.27 0.22 -0.10 16 7 C -0.07 -0.04 4.37 -19.87 -0.09 -0.13 16 8 C -0.10 0.61 5.83 29.10 0.17 0.78 16 9 C 0.52 -0.24 7.82 87.66 0.69 0.45 16 10 O -0.58 -5.87 15.65 -3.00 -0.05 -5.92 16 11 N -0.70 4.33 5.27 -440.03 -2.32 2.01 16 12 C 0.12 -0.40 4.29 45.52 0.20 -0.21 16 13 H 0.08 0.20 7.50 -2.39 -0.02 0.18 16 14 C -0.14 0.57 7.27 31.18 0.23 0.79 16 15 C -0.06 0.45 3.87 -10.95 -0.04 0.41 16 16 H 0.12 -1.42 8.09 -2.39 -0.02 -1.44 16 17 C -0.07 0.24 5.29 -19.87 -0.11 0.13 16 18 C -0.10 0.49 9.71 22.27 0.22 0.71 16 19 C -0.11 0.39 10.05 22.26 0.22 0.61 16 20 C -0.11 0.00 9.79 22.28 0.22 0.22 16 21 C -0.10 -0.21 6.22 22.31 0.14 -0.07 16 22 Br -0.06 -0.22 33.70 -20.37 -0.69 -0.91 16 23 C -0.10 0.01 8.34 22.28 0.19 0.19 16 24 C -0.13 0.87 7.29 31.12 0.23 1.10 16 25 C -0.11 -0.08 9.70 22.27 0.22 0.14 16 26 C -0.12 -0.19 8.67 22.27 0.19 0.00 16 27 H 0.39 -1.26 8.70 -74.06 -0.64 -1.90 16 28 H 0.11 0.36 7.96 -2.39 -0.02 0.35 16 29 H -0.30 -2.18 7.11 99.48 0.71 -1.48 16 30 H -0.28 -1.09 7.11 99.48 0.71 -0.38 16 31 H 0.12 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.13 -0.05 8.06 -2.91 -0.02 -0.08 16 33 H 0.13 -1.42 8.08 -2.39 -0.02 -1.44 16 34 H 0.13 -1.57 8.08 -2.39 -0.02 -1.59 16 35 H 0.42 -5.50 8.71 -92.71 -0.81 -6.30 16 36 H 0.09 -0.19 6.34 -2.39 -0.02 -0.21 16 37 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.15 -1.54 8.05 -2.91 -0.02 -1.56 16 39 H 0.15 -1.18 8.06 -2.91 -0.02 -1.20 16 40 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 41 H 0.13 -0.10 6.68 -2.91 -0.02 -0.12 16 42 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 43 H 0.09 -0.47 7.71 -2.39 -0.02 -0.49 16 44 H 0.14 -0.52 8.06 -2.91 -0.02 -0.55 16 45 H 0.14 -0.34 4.88 -2.91 -0.01 -0.35 16 Total: 0.00 -21.91 394.80 -0.10 -22.01 By element: Atomic # 1 Polarization: -19.07 SS G_CDS: -0.38 Total: -19.45 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 3.19 Total: 4.20 kcal Atomic # 7 Polarization: 4.33 SS G_CDS: -2.32 Total: 2.01 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -1.95 Total: -10.04 kcal Atomic # 14 Polarization: 0.12 SS G_CDS: 2.04 Total: 2.17 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.69 Total: -0.91 kcal Total: -21.91 -0.10 -22.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.281 kcal (2) G-P(sol) polarization free energy of solvation -21.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds