Wall clock time and date at job start Sun Mar 7 2021 01:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.34455 * 126.48404 * 105.02236 * 4 2 1 6 6 N 1.36560 * 109.98926 * 180.02562 * 5 4 2 7 7 C 1.37833 * 109.86073 * 0.02562 * 6 5 4 8 8 C 1.38641 * 133.38192 * 180.02562 * 7 6 5 9 9 C 1.39332 * 119.66240 * 179.25359 * 8 7 6 10 10 C 1.47580 * 119.82907 * 180.22620 * 9 8 7 11 11 O 1.21590 * 120.00217 * 0.36910 * 10 9 8 12 12 N 1.34778 * 119.99672 * 180.36412 * 10 9 8 13 13 C 1.46505 * 119.99781 * 180.02562 * 12 10 9 14 14 H 1.08995 * 112.84688 * 25.33412 * 13 12 10 15 15 C 1.53782 * 113.61112 * 156.53131 * 13 12 10 16 16 C 1.53776 * 87.07867 * 89.11852 * 15 13 12 17 17 H 1.09003 * 113.61221 * 270.87661 * 16 15 13 18 18 C 1.50705 * 113.61561 * 140.06469 * 16 15 13 19 19 C 1.38221 * 119.99424 * 119.99282 * 18 16 15 20 20 C 1.38264 * 120.01681 * 179.97438 * 19 18 16 21 21 C 1.38201 * 120.01340 * 359.97438 * 20 19 18 22 22 C 1.38348 * 119.98497 * 0.02766 * 21 20 19 23 23 Br 1.89100 * 120.00642 * 180.02562 * 22 21 20 24 24 C 1.38242 * 119.99323 * 299.72525 * 18 16 15 25 25 C 1.53782 * 113.61368 * 254.13724 * 13 12 10 26 26 C 1.40194 * 120.33727 * 0.59702 * 9 8 7 27 27 C 1.36237 * 120.37728 * 359.61527 * 26 9 8 28 28 C 1.39870 * 119.95827 * 359.97438 * 27 26 9 29 29 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 30 30 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 31 31 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 32 32 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 33 33 H 1.08000 * 125.00633 * 0.02562 * 5 4 2 34 34 H 0.97000 * 125.07527 * 180.02562 * 6 5 4 35 35 H 1.08001 * 120.17157 * 359.94947 * 8 7 6 36 36 H 0.96994 * 120.00067 * 0.02562 * 12 10 9 37 37 H 1.09006 * 113.61240 * 203.66794 * 15 13 12 38 38 H 1.09003 * 113.61768 * 334.48144 * 15 13 12 39 39 H 1.07996 * 119.99299 * 359.97438 * 19 18 16 40 40 H 1.08001 * 119.99531 * 180.02562 * 20 19 18 41 41 H 1.07994 * 120.00766 * 180.02562 * 21 20 19 42 42 H 1.07997 * 120.00362 * 0.02562 * 24 18 16 43 43 H 1.09002 * 113.61373 * 25.43759 * 25 13 12 44 44 H 1.09003 * 113.61137 * 156.33699 * 25 13 12 45 45 H 1.07994 * 119.81701 * 179.58582 * 26 9 8 46 46 H 1.07995 * 120.02075 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.4619 -0.1362 -2.3244 6 7 2.8030 -1.0944 -3.2357 7 6 2.4929 -2.3428 -2.7407 8 6 2.6285 -3.6275 -3.2441 9 6 2.2236 -4.7160 -2.4745 10 6 2.3709 -6.0854 -3.0047 11 8 2.8509 -6.2618 -4.1079 12 7 1.9735 -7.1404 -2.2661 13 6 2.1203 -8.4998 -2.7923 14 1 2.9162 -8.5835 -3.5323 15 6 2.1789 -9.5802 -1.6995 16 6 0.6459 -9.6507 -1.7973 17 1 0.1335 -8.9540 -1.1338 18 6 0.0991 -11.0523 -1.7090 19 6 -0.7778 -11.3893 -0.6951 20 6 -1.2801 -12.6749 -0.6139 21 6 -0.9061 -13.6234 -1.5469 22 6 -0.0284 -13.2864 -2.5619 23 35 0.4832 -14.5836 -3.8392 24 6 0.4703 -11.9992 -2.6453 25 6 0.7928 -9.1334 -3.2408 26 6 1.6697 -4.5167 -1.2021 27 6 1.5288 -3.2575 -0.7016 28 6 1.9385 -2.1550 -1.4587 29 1 -0.3934 0.4418 -0.7650 30 1 1.7923 -0.5138 0.8899 31 1 1.5616 2.4678 1.2086 32 1 3.5346 1.7703 -0.0322 33 1 2.5983 0.9263 -2.4622 34 1 3.2038 -0.9222 -4.1020 35 1 3.0563 -3.7844 -4.2233 36 1 1.5904 -6.9996 -1.3862 37 1 2.6792 -10.4953 -2.0166 38 1 2.5401 -9.2113 -0.7395 39 1 -1.0706 -10.6483 0.0339 40 1 -1.9656 -12.9378 0.1782 41 1 -1.2988 -14.6274 -1.4837 42 1 1.1524 -11.7347 -3.4398 43 1 0.0343 -8.4035 -3.5240 44 1 0.9149 -9.9265 -3.9786 45 1 1.3525 -5.3661 -0.6155 46 1 1.1010 -3.1105 0.2791 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:37:10 Heat of formation + Delta-G solvation = 54.336462 kcal Electronic energy + Delta-G solvation = -30544.173384 eV Core-core repulsion = 26219.736402 eV Total energy + Delta-G solvation = -4324.436982 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 427.057 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.45781 -41.62650 -40.48556 -38.94250 -37.83480 -37.42144 -34.73987 -33.32802 -33.22786 -31.93554 -30.71380 -30.45162 -30.21238 -26.73353 -26.64544 -26.28169 -24.72696 -23.64228 -23.44608 -22.45534 -21.63350 -20.77725 -20.17713 -19.43391 -18.42158 -17.98159 -17.57942 -17.16323 -16.94286 -16.55966 -16.28618 -16.12234 -15.97213 -15.73284 -15.53478 -15.19434 -15.05739 -14.95268 -14.73603 -14.68368 -14.48047 -14.34914 -14.21587 -14.00757 -13.51019 -13.44161 -13.07367 -12.93420 -12.64285 -12.36758 -12.28044 -12.27043 -12.02988 -11.92258 -11.89486 -11.55651 -11.33048 -11.20112 -11.14542 -10.77741 -10.28508 -10.17613 -9.83802 -9.61912 -9.35854 -8.78016 -4.96486 -0.32379 0.10862 0.27047 0.37470 0.63635 1.39468 1.42809 1.72013 1.88871 1.89839 2.06360 2.24682 2.57748 2.86342 3.41472 3.58352 3.61646 3.63820 3.69421 3.75371 3.83771 3.90296 3.93223 3.93905 4.05680 4.12344 4.22936 4.29146 4.30980 4.41759 4.50132 4.51305 4.58540 4.59959 4.68691 4.73845 4.77422 4.84136 4.94542 4.96712 4.97378 4.99983 5.11495 5.21632 5.22165 5.36299 5.41572 5.46791 5.52830 5.61284 5.62557 5.84898 5.98740 6.44971 6.55390 6.91497 7.12532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.038 4.038 3 Si 0.792 3.208 4 C -0.235 4.235 5 C 0.096 3.904 6 N -0.578 5.578 7 C 0.066 3.934 8 C -0.067 4.067 9 C -0.137 4.137 10 C 0.564 3.436 11 O -0.581 6.581 12 N -0.693 5.693 13 C 0.115 3.885 14 H 0.085 0.915 15 C -0.124 4.124 16 C -0.063 4.063 17 H 0.121 0.879 18 C -0.068 4.068 19 C -0.102 4.102 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.103 4.103 23 Br -0.063 7.063 24 C -0.099 4.099 25 C -0.144 4.144 26 C -0.106 4.106 27 C -0.086 4.086 28 C -0.081 4.081 29 H 0.393 0.607 30 H 0.097 0.903 31 H -0.306 1.306 32 H -0.285 1.285 33 H 0.219 0.781 34 H 0.435 0.565 35 H 0.128 0.872 36 H 0.415 0.585 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.153 0.847 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 5.368 2.530 6.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.148 4.148 3 Si 0.698 3.302 4 C -0.243 4.243 5 C -0.033 4.033 6 N -0.181 5.181 7 C -0.041 4.041 8 C -0.088 4.088 9 C -0.142 4.142 10 C 0.354 3.646 11 O -0.462 6.462 12 N -0.345 5.345 13 C 0.009 3.991 14 H 0.103 0.897 15 C -0.162 4.162 16 C -0.081 4.081 17 H 0.139 0.861 18 C -0.069 4.069 19 C -0.120 4.120 20 C -0.133 4.133 21 C -0.128 4.128 22 C -0.182 4.182 23 Br 0.022 6.978 24 C -0.118 4.118 25 C -0.183 4.183 26 C -0.126 4.126 27 C -0.105 4.105 28 C -0.087 4.087 29 H 0.243 0.757 30 H 0.114 0.886 31 H -0.234 1.234 32 H -0.212 1.212 33 H 0.235 0.765 34 H 0.275 0.725 35 H 0.146 0.854 36 H 0.254 0.746 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.170 0.830 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.815 5.037 2.104 5.519 hybrid contribution 0.077 -0.618 0.190 0.651 sum -0.737 4.418 2.294 5.033 Atomic orbital electron populations 1.86462 1.17866 1.82292 1.50275 1.24518 0.84621 1.10089 0.95544 0.94077 0.77119 0.73719 0.85298 1.20857 1.12585 0.91522 0.99304 1.22363 0.97104 0.95788 0.88051 1.41825 1.54056 1.03284 1.18911 1.18119 1.03966 0.86887 0.95130 1.20145 0.99787 0.88856 1.00030 1.19437 1.06435 0.91626 0.96658 1.18375 0.76697 0.85403 0.84169 1.90769 1.46685 1.86767 1.22016 1.45436 1.63309 1.04725 1.21024 1.21857 0.98527 0.80966 0.97717 0.89718 1.23367 0.95135 0.98307 0.99422 1.21671 0.96119 0.92431 0.97872 0.86146 1.19837 0.97064 0.95300 0.94685 1.21544 0.95556 0.97097 0.97810 1.21491 0.99917 0.92982 0.98865 1.21354 0.96506 1.01146 0.93779 1.21935 1.03829 0.94483 0.97961 1.96758 1.91413 1.54275 1.55314 1.21086 0.99919 0.91089 0.99724 1.23603 0.97465 1.00415 0.96811 1.20894 0.99538 0.98107 0.94042 1.20405 0.99181 0.90765 1.00135 1.19588 1.00953 0.94311 0.93814 0.75717 0.88565 1.23369 1.21228 0.76493 0.72489 0.85403 0.74578 0.88360 0.88892 0.83042 0.83025 0.84522 0.84809 0.91200 0.88902 0.82954 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.35 12.88 -148.98 -1.92 -1.57 16 2 C -0.04 0.07 3.06 71.24 0.22 0.29 16 3 Si 0.79 -4.14 30.75 68.60 2.11 -2.03 16 4 C -0.24 0.25 5.57 -18.64 -0.10 0.15 16 5 C 0.10 -0.59 10.43 83.09 0.87 0.27 16 6 N -0.58 2.26 6.07 -187.71 -1.14 1.12 16 7 C 0.07 0.18 7.26 38.96 0.28 0.46 16 8 C -0.07 -0.35 9.61 22.63 0.22 -0.13 16 9 C -0.14 -0.61 5.87 -20.07 -0.12 -0.73 16 10 C 0.56 3.75 7.76 86.71 0.67 4.42 16 11 O -0.58 -8.68 15.93 -4.00 -0.06 -8.74 16 12 N -0.69 0.39 5.21 -443.14 -2.31 -1.92 16 13 C 0.11 -0.04 4.30 45.52 0.20 0.15 16 14 H 0.08 0.38 7.50 -2.39 -0.02 0.36 16 15 C -0.12 0.60 7.29 31.12 0.23 0.83 16 16 C -0.06 0.32 3.87 -10.92 -0.04 0.27 16 17 H 0.12 -1.04 8.09 -2.39 -0.02 -1.06 16 18 C -0.07 0.13 5.29 -19.87 -0.11 0.03 16 19 C -0.10 0.34 9.71 22.27 0.22 0.56 16 20 C -0.11 0.26 10.05 22.27 0.22 0.48 16 21 C -0.11 -0.09 9.79 22.29 0.22 0.13 16 22 C -0.10 -0.29 6.22 22.31 0.14 -0.15 16 23 Br -0.06 -0.26 33.70 -20.37 -0.69 -0.95 16 24 C -0.10 -0.10 8.37 22.29 0.19 0.09 16 25 C -0.14 0.21 7.27 31.21 0.23 0.44 16 26 C -0.11 0.00 9.46 22.28 0.21 0.21 16 27 C -0.09 -0.16 10.03 22.20 0.22 0.07 16 28 C -0.08 -0.26 6.35 -20.14 -0.13 -0.39 16 29 H 0.39 -3.49 8.70 -74.05 -0.64 -4.13 16 30 H 0.10 0.05 7.96 -2.39 -0.02 0.03 16 31 H -0.31 -1.03 7.11 99.48 0.71 -0.33 16 32 H -0.29 0.09 7.11 99.48 0.71 0.79 16 33 H 0.22 -3.29 6.35 -2.91 -0.02 -3.31 16 34 H 0.43 -4.10 8.96 -92.71 -0.83 -4.93 16 35 H 0.13 0.75 7.62 -2.91 -0.02 0.73 16 36 H 0.42 -2.79 6.69 -92.71 -0.62 -3.41 16 37 H 0.10 -0.40 7.73 -2.38 -0.02 -0.42 16 38 H 0.09 -0.66 8.14 -2.39 -0.02 -0.67 16 39 H 0.15 -1.25 8.05 -2.91 -0.02 -1.27 16 40 H 0.15 -1.02 8.06 -2.91 -0.02 -1.04 16 41 H 0.14 -0.13 8.06 -2.91 -0.02 -0.16 16 42 H 0.13 0.00 6.65 -2.91 -0.02 -0.02 16 43 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.09 -0.08 6.31 -2.39 -0.02 -0.09 16 45 H 0.15 -1.06 6.36 -2.91 -0.02 -1.08 16 46 H 0.14 -0.06 8.06 -2.91 -0.02 -0.08 16 Total: 0.00 -25.58 403.75 -1.16 -26.74 By element: Atomic # 1 Polarization: -19.11 SS G_CDS: -0.98 Total: -20.10 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 3.83 Total: 7.45 kcal Atomic # 7 Polarization: 2.64 SS G_CDS: -3.45 Total: -0.81 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -1.98 Total: -10.31 kcal Atomic # 14 Polarization: -4.14 SS G_CDS: 2.11 Total: -2.03 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -0.69 Total: -0.95 kcal Total: -25.58 -1.16 -26.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.077 kcal (2) G-P(sol) polarization free energy of solvation -25.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds