Wall clock time and date at job start Sun Mar 7 2021 01:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86294 * 109.47581 * 2 1 4 4 C 1.50701 * 109.46531 * 120.00030 * 2 1 3 5 5 C 1.37944 * 119.92554 * 64.99930 * 4 2 1 6 6 C 1.39594 * 119.87463 * 179.97438 * 5 4 2 7 7 C 1.47849 * 120.14241 * 180.02562 * 6 5 4 8 8 O 1.21548 * 119.99795 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99614 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.85065 * 336.19548 * 10 9 7 12 12 C 1.53789 * 113.68981 * 107.46234 * 10 9 7 13 13 C 1.53783 * 87.07843 * 89.12726 * 12 10 9 14 14 H 1.09002 * 113.68836 * 270.86892 * 13 12 10 15 15 C 1.50696 * 113.61194 * 139.98341 * 13 12 10 16 16 C 1.38219 * 119.99437 * 142.50305 * 15 13 12 17 17 C 1.38269 * 120.02302 * 180.02562 * 16 15 13 18 18 C 1.38195 * 120.00633 * 359.97128 * 17 16 15 19 19 C 1.38352 * 119.99072 * 0.02884 * 18 17 16 20 20 Br 1.89100 * 120.00806 * 179.97438 * 19 18 17 21 21 C 1.38239 * 119.99546 * 322.79861 * 15 13 12 22 22 C 1.53777 * 87.08375 * 25.43322 * 13 12 10 23 23 C 1.39545 * 119.72085 * 0.27523 * 6 5 4 24 24 C 1.38079 * 119.84182 * 359.44627 * 23 6 5 25 25 Br 1.89100 * 119.93759 * 180.27507 * 24 23 6 26 26 C 1.38361 * 119.91917 * 244.97364 * 4 2 1 27 27 H 0.96703 * 113.99611 * 300.00560 * 1 2 3 28 28 H 1.08997 * 109.46925 * 239.99561 * 2 1 3 29 29 H 1.48508 * 109.99946 * 299.99882 * 3 2 1 30 30 H 1.48500 * 110.00146 * 61.31371 * 3 2 1 31 31 H 1.08000 * 120.05950 * 359.95424 * 5 4 2 32 32 H 0.96997 * 120.00412 * 359.97438 * 9 7 6 33 33 H 1.08994 * 113.61379 * 334.57894 * 12 10 9 34 34 H 1.08994 * 113.61119 * 203.67422 * 12 10 9 35 35 H 1.08001 * 119.99215 * 359.97438 * 16 15 13 36 36 H 1.07998 * 119.99819 * 179.97438 * 17 16 15 37 37 H 1.07994 * 120.00214 * 179.97438 * 18 17 16 38 38 H 1.07997 * 120.00689 * 0.02562 * 21 15 13 39 39 H 1.08998 * 113.61786 * 89.11283 * 22 13 12 40 40 H 1.09003 * 113.61425 * 219.93510 * 22 13 12 41 41 H 1.08003 * 120.07831 * 179.70191 * 23 6 5 42 42 H 1.08005 * 119.85982 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 1.6841 -2.0574 1.3965 6 6 2.1503 -2.7145 2.5364 7 6 1.8893 -4.1582 2.7201 8 8 1.2673 -4.7753 1.8776 9 7 2.3402 -4.7897 3.8221 10 6 2.0811 -6.2200 4.0042 11 1 1.2110 -6.5669 3.4469 12 6 3.3262 -7.1026 3.8144 13 6 3.5973 -6.9064 5.3154 14 1 4.2061 -6.0305 5.5396 15 6 4.0865 -8.1520 6.0083 16 6 5.0469 -8.0602 6.9980 17 6 5.4966 -9.2027 7.6338 18 6 4.9853 -10.4370 7.2803 19 6 4.0239 -10.5294 6.2897 20 35 3.3245 -12.2181 5.8051 21 6 3.5790 -9.3868 5.6497 22 6 2.0872 -6.6646 5.4763 23 6 2.8591 -2.0020 3.5045 24 6 3.1048 -0.6553 3.3238 25 35 4.0717 0.3111 4.6303 26 6 2.6395 -0.0102 2.1909 27 1 -0.3933 0.4418 0.7650 28 1 1.7923 -0.5139 -0.8899 29 1 1.5616 2.4678 -1.2086 30 1 1.5880 2.4585 1.2242 31 1 1.1308 -2.6024 0.6460 32 1 2.8363 -4.2972 4.4945 33 1 4.0845 -6.6555 3.1717 34 1 3.0941 -8.1325 3.5436 35 1 5.4470 -7.0958 7.2743 36 1 6.2474 -9.1306 8.4067 37 1 5.3369 -11.3294 7.7766 38 1 2.8323 -9.4590 4.8728 39 1 1.5163 -7.5749 5.6598 40 1 1.8452 -5.8649 6.1763 41 1 3.2182 -2.5036 4.3910 42 1 2.8302 1.0443 2.0561 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_12335870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:37:47 Heat of formation + Delta-G solvation = 28.966495 kcal Electronic energy + Delta-G solvation = -27882.612345 eV Core-core repulsion = 23694.673047 eV Total energy + Delta-G solvation = -4187.939298 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 465.957 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.89884 -41.05132 -40.00923 -38.80887 -37.81404 -34.95186 -33.62508 -33.41200 -32.93856 -31.63505 -30.45608 -30.23495 -27.10401 -26.73505 -26.63695 -25.12983 -23.47355 -22.84276 -22.46357 -21.68910 -20.22770 -19.23003 -18.17684 -17.89986 -17.61783 -17.28160 -16.73819 -16.45515 -16.30352 -16.20551 -16.04579 -15.72078 -15.28877 -15.12606 -14.96853 -14.66252 -14.49692 -14.29651 -14.21967 -14.16301 -13.50367 -13.43736 -13.29698 -13.04230 -12.93033 -12.36964 -12.28481 -12.04070 -11.94831 -11.90499 -11.81831 -11.55337 -11.46839 -11.32926 -11.22087 -11.20462 -10.70736 -10.39781 -10.12870 -9.90739 -9.83036 -9.61276 -4.97258 -0.52047 -0.15906 0.11497 0.27615 0.43953 0.64415 1.20750 1.50432 1.54485 1.87452 1.95289 2.45153 2.58467 3.25118 3.31985 3.40592 3.46471 3.61680 3.67134 3.80384 3.83965 3.87544 3.93804 3.96300 4.06224 4.19964 4.23224 4.29571 4.29857 4.42389 4.54390 4.57461 4.67607 4.74436 4.76434 4.80687 4.92720 4.94667 4.97141 5.00410 5.07417 5.11863 5.22463 5.35177 5.38081 5.47263 5.59954 5.85653 6.34853 6.42392 7.02651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.084 4.084 3 Si 0.763 3.237 4 C -0.113 4.113 5 C -0.029 4.029 6 C -0.135 4.135 7 C 0.563 3.437 8 O -0.572 6.572 9 N -0.691 5.691 10 C 0.114 3.886 11 H 0.086 0.914 12 C -0.144 4.144 13 C -0.063 4.063 14 H 0.123 0.877 15 C -0.068 4.068 16 C -0.101 4.101 17 C -0.114 4.114 18 C -0.109 4.109 19 C -0.103 4.103 20 Br -0.064 7.064 21 C -0.099 4.099 22 C -0.126 4.126 23 C -0.042 4.042 24 C -0.099 4.099 25 Br -0.028 7.028 26 C -0.062 4.062 27 H 0.388 0.612 28 H 0.130 0.870 29 H -0.298 1.298 30 H -0.272 1.272 31 H 0.131 0.869 32 H 0.416 0.584 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.164 0.836 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.359 4.082 4.982 8.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.193 4.193 3 Si 0.667 3.333 4 C -0.114 4.114 5 C -0.048 4.048 6 C -0.139 4.139 7 C 0.351 3.649 8 O -0.451 6.451 9 N -0.343 5.343 10 C 0.009 3.991 11 H 0.104 0.896 12 C -0.183 4.183 13 C -0.081 4.081 14 H 0.141 0.859 15 C -0.069 4.069 16 C -0.119 4.119 17 C -0.133 4.133 18 C -0.128 4.128 19 C -0.182 4.182 20 Br 0.021 6.979 21 C -0.118 4.118 22 C -0.163 4.163 23 C -0.062 4.062 24 C -0.178 4.178 25 Br 0.058 6.942 26 C -0.082 4.082 27 H 0.237 0.763 28 H 0.148 0.852 29 H -0.226 1.226 30 H -0.198 1.198 31 H 0.149 0.851 32 H 0.254 0.746 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.171 0.829 36 H 0.169 0.831 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.181 0.819 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.900 3.862 4.183 7.512 hybrid contribution -1.149 -0.268 0.345 1.229 sum 3.751 3.594 4.529 6.892 Atomic orbital electron populations 1.86621 1.18167 1.80361 1.50236 1.25300 0.83708 1.12120 0.98133 0.94141 0.90196 0.71699 0.77290 1.20236 0.99903 0.93892 0.97409 1.21270 0.94069 0.93744 0.95763 1.19840 1.03784 0.93010 0.97291 1.18339 0.78212 0.86775 0.81611 1.90809 1.42068 1.68201 1.44068 1.45439 1.56755 1.09826 1.22305 1.21877 0.98792 0.79954 0.98473 0.89558 1.23559 0.97805 1.00685 0.96220 1.21644 0.96665 0.95566 0.94227 0.85912 1.19841 0.96483 0.93918 0.96669 1.21551 0.95634 0.99958 0.94786 1.21494 1.00056 0.91497 1.00243 1.21351 0.95598 0.99761 0.96122 1.21940 1.02463 0.91534 1.02303 1.96762 1.85470 1.23279 1.92343 1.21090 1.00191 0.91009 0.99545 1.23382 0.95337 1.02955 0.94666 1.21468 0.94240 0.92174 0.98358 1.21734 1.04095 0.95291 0.96710 1.96865 1.72206 1.73554 1.51605 1.21425 0.94455 1.00838 0.91464 0.76268 0.85244 1.22597 1.19774 0.85148 0.74565 0.90902 0.88949 0.82921 0.83059 0.84622 0.84821 0.88462 0.88813 0.81861 0.82755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.89 12.83 -148.98 -1.91 -2.80 16 2 C -0.08 0.18 2.80 71.24 0.20 0.38 16 3 Si 0.76 -3.04 29.87 68.60 2.05 -0.99 16 4 C -0.11 0.22 5.34 -19.90 -0.11 0.11 16 5 C -0.03 -0.05 9.23 22.53 0.21 0.16 16 6 C -0.14 0.01 5.87 -20.09 -0.12 -0.10 16 7 C 0.56 1.79 7.77 86.79 0.67 2.46 16 8 O -0.57 -7.05 15.95 -3.87 -0.06 -7.11 16 9 N -0.69 2.59 5.22 -442.89 -2.31 0.28 16 10 C 0.11 -0.32 4.32 45.52 0.20 -0.12 16 11 H 0.09 0.20 7.46 -2.39 -0.02 0.19 16 12 C -0.14 0.53 7.26 31.12 0.23 0.76 16 13 C -0.06 0.45 3.86 -11.02 -0.04 0.40 16 14 H 0.12 -1.37 8.09 -2.39 -0.02 -1.39 16 15 C -0.07 0.24 5.29 -19.87 -0.11 0.13 16 16 C -0.10 0.48 9.71 22.27 0.22 0.70 16 17 C -0.11 0.38 10.05 22.27 0.22 0.60 16 18 C -0.11 0.00 9.79 22.29 0.22 0.22 16 19 C -0.10 -0.20 6.22 22.31 0.14 -0.06 16 20 Br -0.06 -0.22 33.70 -20.37 -0.69 -0.91 16 21 C -0.10 0.02 8.37 22.29 0.19 0.21 16 22 C -0.13 0.85 7.29 31.12 0.23 1.07 16 23 C -0.04 0.21 9.28 22.55 0.21 0.42 16 24 C -0.10 0.39 6.22 22.28 0.14 0.53 16 25 Br -0.03 0.12 33.69 -20.37 -0.69 -0.57 16 26 C -0.06 0.24 8.40 22.34 0.19 0.43 16 27 H 0.39 -1.72 8.70 -74.06 -0.64 -2.36 16 28 H 0.13 -0.44 7.96 -2.39 -0.02 -0.46 16 29 H -0.30 -1.22 7.11 99.48 0.71 -0.51 16 30 H -0.27 0.35 7.01 99.48 0.70 1.05 16 31 H 0.13 0.65 7.65 -2.91 -0.02 0.63 16 32 H 0.42 -4.26 6.74 -92.71 -0.62 -4.88 16 33 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.09 -0.24 6.29 -2.39 -0.02 -0.25 16 35 H 0.15 -1.51 8.05 -2.91 -0.02 -1.53 16 36 H 0.15 -1.16 8.06 -2.91 -0.02 -1.18 16 37 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 38 H 0.13 -0.15 6.64 -2.91 -0.02 -0.17 16 39 H 0.10 -0.54 7.73 -2.39 -0.02 -0.56 16 40 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 41 H 0.16 -1.78 6.40 -2.91 -0.02 -1.80 16 42 H 0.16 -1.03 4.82 -2.91 -0.01 -1.05 16 Total: 0.00 -18.52 391.39 -0.87 -19.39 By element: Atomic # 1 Polarization: -15.44 SS G_CDS: -0.14 Total: -15.58 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 2.88 Total: 8.29 kcal Atomic # 7 Polarization: 2.59 SS G_CDS: -2.31 Total: 0.28 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -1.97 Total: -9.91 kcal Atomic # 14 Polarization: -3.04 SS G_CDS: 2.05 Total: -0.99 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -1.37 Total: -1.48 kcal Total: -18.52 -0.87 -19.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_12335870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.353 kcal (2) G-P(sol) polarization free energy of solvation -18.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds