Wall clock time and date at job start Sun Mar 7 2021 01:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86294 * 109.47396 * 2 1 4 4 C 1.50710 * 109.46818 * 240.00167 * 2 1 3 5 5 C 1.38640 * 119.93860 * 75.02843 * 4 2 1 6 6 F 1.35102 * 119.88133 * 359.97144 * 5 4 2 7 7 C 1.38673 * 120.23376 * 179.97438 * 5 4 2 8 8 C 1.37815 * 120.12459 * 359.77975 * 7 5 4 9 9 C 1.39670 * 119.87416 * 0.46799 * 8 7 5 10 10 C 1.47729 * 120.11694 * 179.78880 * 9 8 7 11 11 O 1.21567 * 120.00284 * 179.72518 * 10 9 8 12 12 N 1.34774 * 119.99645 * 359.72226 * 10 9 8 13 13 C 1.46503 * 119.99761 * 179.97438 * 12 10 9 14 14 H 1.08991 * 112.85325 * 336.20291 * 13 12 10 15 15 C 1.53788 * 113.68901 * 107.46998 * 13 12 10 16 16 C 1.53782 * 87.08323 * 89.12631 * 15 13 12 17 17 H 1.09000 * 113.68848 * 270.87561 * 16 15 13 18 18 C 1.50692 * 113.61293 * 139.98086 * 16 15 13 19 19 C 1.38225 * 119.99577 * 142.50312 * 18 16 15 20 20 C 1.38254 * 120.02139 * 179.74916 * 19 18 16 21 21 C 1.38196 * 120.01455 * 359.97438 * 20 19 18 22 22 C 1.38354 * 119.98568 * 359.97438 * 21 20 19 23 23 Br 1.89101 * 120.00911 * 179.97438 * 22 21 20 24 24 C 1.38244 * 119.99845 * 322.22821 * 18 16 15 25 25 C 1.53778 * 87.08011 * 25.43281 * 16 15 13 26 26 C 1.37857 * 119.93892 * 254.99789 * 4 2 1 27 27 H 0.96695 * 114.00135 * 299.99494 * 1 2 3 28 28 H 1.08997 * 109.47287 * 120.00991 * 2 1 3 29 29 H 1.48499 * 110.00169 * 178.68051 * 3 2 1 30 30 H 1.48499 * 110.00288 * 300.00453 * 3 2 1 31 31 H 1.07998 * 119.93432 * 180.02562 * 7 5 4 32 32 H 1.07992 * 120.06411 * 180.25396 * 8 7 5 33 33 H 0.97002 * 120.00473 * 359.97438 * 12 10 9 34 34 H 1.09004 * 113.60922 * 334.57542 * 15 13 12 35 35 H 1.09002 * 113.61474 * 203.67698 * 15 13 12 36 36 H 1.08004 * 119.98585 * 359.72279 * 19 18 16 37 37 H 1.08001 * 119.99527 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.01038 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.99955 * 0.24803 * 24 18 16 40 40 H 1.08999 * 113.61759 * 89.11456 * 25 16 15 41 41 H 1.08998 * 113.61556 * 219.93934 * 25 16 15 42 42 H 1.07997 * 120.06002 * 0.04839 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 1.8693 -0.0832 -2.4654 6 9 1.3579 1.1636 -2.5621 7 6 2.3302 -0.7310 -3.6016 8 6 2.8569 -2.0011 -3.5080 9 6 2.9169 -2.6396 -2.2672 10 6 3.4761 -4.0028 -2.1614 11 8 3.5320 -4.5547 -1.0797 12 7 3.9244 -4.6347 -3.2643 13 6 4.4795 -5.9865 -3.1593 14 1 4.8570 -6.2128 -2.1622 15 6 3.5603 -7.0781 -3.7324 16 6 4.2530 -6.8413 -5.0847 17 1 3.7779 -6.0701 -5.6910 18 6 4.5224 -8.1082 -5.8550 19 6 4.3881 -8.1223 -7.2306 20 6 4.6401 -9.2830 -7.9383 21 6 5.0269 -10.4295 -7.2707 22 6 5.1625 -10.4156 -5.8939 23 35 5.6911 -11.9842 -4.9797 24 6 4.9093 -9.2546 -5.1863 25 6 5.4661 -6.3364 -4.2858 26 6 2.4521 -1.9825 -1.1262 27 1 -0.3933 0.4416 0.7650 28 1 1.7923 -0.5140 0.8899 29 1 3.5346 1.7702 0.0321 30 1 1.5615 2.4679 -1.2084 31 1 2.2799 -0.2377 -4.5610 32 1 3.2193 -2.5030 -4.3928 33 1 3.8794 -4.1946 -4.1275 34 1 2.5047 -6.8061 -3.7289 35 1 3.7447 -8.0679 -3.3146 36 1 4.0858 -7.2265 -7.7527 37 1 4.5346 -9.2937 -9.0131 38 1 5.2233 -11.3362 -7.8236 39 1 5.0146 -9.2434 -4.1115 40 1 6.1717 -7.1234 -4.0193 41 1 5.9501 -5.4666 -4.7299 42 1 2.4997 -2.4703 -0.1638 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_12496548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:38:14 Heat of formation + Delta-G solvation = -11.166262 kcal Electronic energy + Delta-G solvation = -28278.391371 eV Core-core repulsion = 23959.075813 eV Total energy + Delta-G solvation = -4319.315557 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.037 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -50.56604 -41.86502 -40.92785 -39.78152 -38.75720 -37.63568 -34.94601 -33.40145 -33.02138 -32.25891 -31.46652 -30.24452 -27.09365 -26.73806 -26.52771 -24.99555 -23.54258 -23.40605 -22.48806 -21.65243 -20.25824 -19.05974 -18.98264 -18.52850 -18.08514 -17.94718 -17.21201 -16.95599 -16.54546 -16.28811 -16.20812 -16.01271 -15.49423 -15.22580 -15.15264 -15.09473 -14.82602 -14.67622 -14.50151 -14.27505 -14.22046 -13.90594 -13.69608 -13.48639 -13.38108 -12.94040 -12.85878 -12.37710 -12.34717 -12.04075 -11.91072 -11.58588 -11.56051 -11.34285 -11.26735 -11.21197 -10.66382 -10.32593 -10.18413 -9.92422 -9.83767 -9.62330 -4.98336 -0.63981 -0.11437 0.10350 0.26450 0.63416 1.21324 1.46248 1.61866 1.88083 1.94373 2.42484 2.57309 2.87772 3.16302 3.40398 3.43290 3.48055 3.61122 3.67125 3.74484 3.83076 3.87465 3.93108 4.01260 4.05217 4.21140 4.22563 4.28493 4.41251 4.52599 4.56729 4.62747 4.66595 4.73750 4.77830 4.79214 4.86387 4.93352 4.96264 4.96775 4.99617 5.10034 5.21413 5.35042 5.43798 5.48201 5.59066 5.84518 6.35580 6.80641 7.02762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.079 4.079 3 Si 0.756 3.244 4 C -0.137 4.137 5 C 0.101 3.899 6 F -0.126 7.126 7 C -0.153 4.153 8 C -0.037 4.037 9 C -0.154 4.154 10 C 0.565 3.435 11 O -0.573 6.573 12 N -0.690 5.690 13 C 0.115 3.885 14 H 0.087 0.913 15 C -0.145 4.145 16 C -0.063 4.063 17 H 0.124 0.876 18 C -0.069 4.069 19 C -0.101 4.101 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.103 4.103 23 Br -0.064 7.064 24 C -0.099 4.099 25 C -0.125 4.125 26 C -0.024 4.024 27 H 0.405 0.595 28 H 0.096 0.904 29 H -0.303 1.303 30 H -0.265 1.265 31 H 0.173 0.827 32 H 0.182 0.818 33 H 0.417 0.583 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 3.224 -4.005 5.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.188 4.188 3 Si 0.661 3.339 4 C -0.138 4.138 5 C 0.081 3.919 6 F -0.105 7.105 7 C -0.171 4.171 8 C -0.056 4.056 9 C -0.157 4.157 10 C 0.353 3.647 11 O -0.453 6.453 12 N -0.342 5.342 13 C 0.009 3.991 14 H 0.105 0.895 15 C -0.184 4.184 16 C -0.081 4.081 17 H 0.142 0.858 18 C -0.069 4.069 19 C -0.119 4.119 20 C -0.133 4.133 21 C -0.128 4.128 22 C -0.182 4.182 23 Br 0.022 6.978 24 C -0.118 4.118 25 C -0.162 4.162 26 C -0.043 4.043 27 H 0.257 0.743 28 H 0.114 0.886 29 H -0.230 1.230 30 H -0.191 1.191 31 H 0.191 0.809 32 H 0.199 0.801 33 H 0.256 0.744 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.984 2.550 -3.870 4.738 hybrid contribution -0.143 -0.144 -0.496 0.536 sum 0.841 2.406 -4.366 5.055 Atomic orbital electron populations 1.86442 1.16736 1.82407 1.51603 1.24753 0.86375 1.11135 0.96563 0.94989 0.77732 0.76523 0.84649 1.19592 1.04379 0.95901 0.93942 1.18352 0.97211 0.80806 0.95519 1.91481 1.84793 1.38224 1.95968 1.21471 1.00859 0.96351 0.98463 1.21562 0.93806 0.93045 0.97160 1.20010 1.05470 0.95035 0.95187 1.18230 0.77103 0.85243 0.84094 1.90801 1.57280 1.68209 1.28995 1.45399 1.62114 1.16436 1.10267 1.21876 0.95447 0.81391 1.00358 0.89516 1.23568 0.99767 0.99366 0.95682 1.21651 0.97559 0.94509 0.94392 0.85827 1.19853 0.98473 0.94548 0.94075 1.21549 0.97766 0.99207 0.93427 1.21491 0.98275 0.92063 1.01495 1.21354 0.99092 1.00224 0.92178 1.21941 1.07669 0.93058 0.95579 1.96763 1.90418 1.33605 1.77043 1.21092 0.98927 0.91289 1.00535 1.23379 0.95951 1.02458 0.94460 1.21090 0.92279 0.91281 0.99692 0.74291 0.88590 1.23024 1.19141 0.80944 0.80113 0.74379 0.91036 0.88987 0.82904 0.83077 0.84624 0.84805 0.88484 0.88678 0.83767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.92 12.86 -148.98 -1.92 -2.83 16 2 C -0.08 -0.10 2.79 71.24 0.20 0.10 16 3 Si 0.76 0.27 30.77 68.60 2.11 2.38 16 4 C -0.14 -0.67 4.81 -19.86 -0.10 -0.77 16 5 C 0.10 0.47 6.67 22.47 0.15 0.62 16 6 F -0.13 -1.01 12.83 44.97 0.58 -0.43 16 7 C -0.15 0.30 10.01 22.27 0.22 0.52 16 8 C -0.04 0.18 9.54 22.52 0.21 0.40 16 9 C -0.15 -0.20 5.87 -20.09 -0.12 -0.31 16 10 C 0.57 1.89 7.77 86.75 0.67 2.57 16 11 O -0.57 -7.03 15.94 -3.93 -0.06 -7.09 16 12 N -0.69 2.89 5.22 -443.00 -2.31 0.58 16 13 C 0.11 -0.35 4.32 45.52 0.20 -0.16 16 14 H 0.09 0.17 7.46 -2.39 -0.02 0.16 16 15 C -0.15 0.54 7.26 31.12 0.23 0.77 16 16 C -0.06 0.46 3.86 -11.02 -0.04 0.42 16 17 H 0.12 -1.44 8.09 -2.39 -0.02 -1.46 16 18 C -0.07 0.25 5.29 -19.87 -0.11 0.14 16 19 C -0.10 0.49 9.71 22.27 0.22 0.71 16 20 C -0.11 0.38 10.05 22.26 0.22 0.61 16 21 C -0.11 0.00 9.79 22.29 0.22 0.22 16 22 C -0.10 -0.20 6.22 22.31 0.14 -0.06 16 23 Br -0.06 -0.22 33.70 -20.37 -0.69 -0.91 16 24 C -0.10 0.03 8.34 22.29 0.19 0.21 16 25 C -0.12 0.90 7.29 31.12 0.23 1.12 16 26 C -0.02 -0.11 9.21 22.52 0.21 0.10 16 27 H 0.41 -3.62 8.74 -74.06 -0.65 -4.27 16 28 H 0.10 -0.24 7.77 -2.39 -0.02 -0.26 16 29 H -0.30 -2.09 7.11 99.48 0.71 -1.39 16 30 H -0.26 -1.83 5.33 99.48 0.53 -1.30 16 31 H 0.17 -1.27 8.06 -2.91 -0.02 -1.29 16 32 H 0.18 -2.56 6.40 -2.91 -0.02 -2.58 16 33 H 0.42 -4.77 6.73 -92.71 -0.62 -5.40 16 34 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 35 H 0.09 -0.24 6.32 -2.39 -0.02 -0.25 16 36 H 0.15 -1.54 8.05 -2.91 -0.02 -1.56 16 37 H 0.15 -1.16 8.06 -2.91 -0.02 -1.18 16 38 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 39 H 0.13 -0.16 6.67 -2.91 -0.02 -0.18 16 40 H 0.10 -0.57 7.71 -2.39 -0.02 -0.59 16 41 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 42 H 0.14 0.71 7.58 -2.91 -0.02 0.68 16 Total: 0.00 -23.66 374.54 0.34 -23.32 By element: Atomic # 1 Polarization: -21.91 SS G_CDS: -0.32 Total: -22.22 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 2.94 Total: 7.20 kcal Atomic # 7 Polarization: 2.89 SS G_CDS: -2.31 Total: 0.58 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -1.98 Total: -9.92 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.58 Total: -0.43 kcal Atomic # 14 Polarization: 0.27 SS G_CDS: 2.11 Total: 2.38 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.69 Total: -0.91 kcal Total: -23.66 0.34 -23.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_12496548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.157 kcal (2) G-P(sol) polarization free energy of solvation -23.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds