Wall clock time and date at job start Sun Mar 7 2021 01:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86290 * 109.46941 * 2 1 4 4 C 1.50705 * 109.47075 * 120.00207 * 2 1 3 5 5 C 1.35078 * 126.07263 * 254.97328 * 4 2 1 6 6 N 1.35045 * 107.97849 * 180.02562 * 5 4 2 7 7 C 1.46499 * 125.93014 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.46962 * 124.99790 * 7 6 5 9 9 O 1.21275 * 119.99947 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99715 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99597 * 180.02562 * 10 8 7 12 12 H 1.08998 * 112.91090 * 23.74977 * 11 10 8 13 13 C 1.53781 * 113.61334 * 154.99978 * 11 10 8 14 14 C 1.53786 * 87.17350 * 89.07333 * 13 11 10 15 15 H 1.09000 * 113.60973 * 270.92699 * 14 13 11 16 16 C 1.50690 * 113.61518 * 140.02616 * 14 13 11 17 17 C 1.38199 * 119.99252 * 299.72455 * 16 14 13 18 18 C 1.38352 * 119.99114 * 179.75290 * 17 16 14 19 19 Br 1.89094 * 120.01444 * 180.26968 * 18 17 16 20 20 C 1.38312 * 119.97604 * 0.52100 * 18 17 16 21 21 C 1.38236 * 119.99090 * 359.73133 * 20 18 17 22 22 C 1.38231 * 120.00956 * 0.02562 * 21 20 18 23 23 C 1.53781 * 113.61146 * 252.49455 * 11 10 8 24 24 N 1.40071 * 108.13758 * 0.26235 * 6 5 4 25 25 C 1.31627 * 108.10797 * 359.55533 * 24 6 5 26 26 C 1.48413 * 126.03991 * 180.13167 * 25 24 6 27 27 C 1.39324 * 120.11896 * 145.07966 * 26 25 24 28 28 C 1.38026 * 119.87481 * 179.72773 * 27 26 25 29 29 C 1.38323 * 120.12242 * 0.57297 * 28 27 26 30 30 C 1.38323 * 120.23912 * 359.70195 * 29 28 27 31 31 C 1.38025 * 120.12140 * 0.02562 * 30 29 28 32 32 H 0.96693 * 113.99718 * 299.99662 * 1 2 3 33 33 H 1.08999 * 109.46720 * 239.99686 * 2 1 3 34 34 H 1.48501 * 110.00123 * 299.99836 * 3 2 1 35 35 H 1.48501 * 110.00190 * 61.32290 * 3 2 1 36 36 H 1.07998 * 126.01165 * 0.02562 * 5 4 2 37 37 H 1.09000 * 109.47231 * 5.00544 * 7 6 5 38 38 H 1.08993 * 109.47055 * 244.99826 * 7 6 5 39 39 H 0.96995 * 120.00232 * 359.97438 * 10 8 7 40 40 H 1.09002 * 113.61445 * 203.66333 * 13 11 10 41 41 H 1.09002 * 113.61408 * 334.48063 * 13 11 10 42 42 H 1.07998 * 120.00743 * 359.97438 * 17 16 14 43 43 H 1.07993 * 120.00337 * 179.70390 * 20 18 17 44 44 H 1.08000 * 119.99796 * 179.97438 * 21 20 18 45 45 H 1.08003 * 119.98918 * 179.97438 * 22 21 20 46 46 H 1.09005 * 113.61471 * 25.43638 * 23 11 10 47 47 H 1.08996 * 113.61178 * 156.24980 * 23 11 10 48 48 H 1.07992 * 120.06142 * 0.02562 * 27 26 25 49 49 H 1.08003 * 119.93799 * 180.32151 * 28 27 26 50 50 H 1.07996 * 119.88076 * 179.72134 * 29 28 27 51 51 H 1.07996 * 119.94169 * 180.02562 * 30 29 28 52 52 H 1.07993 * 120.06392 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 2.4634 -0.1251 2.3254 6 7 2.7893 -1.0992 3.2021 7 6 3.3945 -0.9011 4.5214 8 6 2.5410 -1.5659 5.5706 9 8 1.5272 -2.1482 5.2479 10 7 2.9048 -1.5141 6.8673 11 6 2.0753 -2.1609 7.8871 12 1 1.4590 -2.9651 7.4854 13 6 2.8523 -2.5545 9.1544 14 6 2.5238 -1.1542 9.6988 15 1 3.2633 -0.3985 9.4344 16 6 2.1721 -1.1434 11.1641 17 6 1.0872 -1.8683 11.6195 18 6 0.7673 -1.8625 12.9655 19 35 -0.7124 -2.8602 13.5905 20 6 1.5272 -1.1225 13.8532 21 6 2.6091 -0.3935 13.3959 22 6 2.9312 -0.4037 12.0517 23 6 1.2967 -1.1691 8.7676 24 7 2.4531 -2.3322 2.6287 25 6 1.9301 -2.1028 1.4428 26 6 1.4335 -3.1303 0.4940 27 6 0.3274 -2.8633 -0.3099 28 6 -0.1268 -3.8204 -1.1946 29 6 0.5070 -5.0473 -1.2756 30 6 1.6021 -5.3198 -0.4757 31 6 2.0680 -4.3678 0.4085 32 1 -0.3932 0.4416 0.7650 33 1 1.7923 -0.5139 -0.8900 34 1 1.5615 2.4678 -1.2085 35 1 1.5879 2.4585 1.2243 36 1 2.6035 0.9355 2.4737 37 1 3.4644 0.1659 4.7326 38 1 4.3921 -1.3400 4.5331 39 1 3.7161 -1.0494 7.1252 40 1 2.3868 -3.3626 9.7187 41 1 3.9162 -2.7172 8.9814 42 1 0.4912 -2.4422 10.9253 43 1 1.2751 -1.1138 14.9032 44 1 3.2023 0.1847 14.0889 45 1 3.7763 0.1663 11.6948 46 1 1.1049 -0.2120 8.2825 47 1 0.4051 -1.5981 9.2248 48 1 -0.1708 -1.9074 -0.2443 49 1 -0.9810 -3.6125 -1.8220 50 1 0.1456 -5.7950 -1.9660 51 1 2.0935 -6.2791 -0.5432 52 1 2.9234 -4.5814 1.0322 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_12622748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:38:18 Heat of formation + Delta-G solvation = 108.921336 kcal Electronic energy + Delta-G solvation = -36438.797970 eV Core-core repulsion = 31612.000677 eV Total energy + Delta-G solvation = -4826.797293 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 468.084 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.49667 -41.59910 -40.41642 -39.76186 -38.85151 -37.87572 -34.90330 -34.59014 -33.33868 -32.36541 -31.99376 -31.70850 -31.34533 -30.26513 -28.79786 -26.75027 -26.40316 -25.79938 -24.27610 -23.53740 -23.45051 -22.52394 -22.05580 -21.47222 -20.97099 -20.19856 -18.77471 -18.56486 -17.95723 -17.77541 -17.29054 -16.84011 -16.73588 -16.52487 -16.25146 -16.21031 -15.99812 -15.83336 -15.51952 -15.41573 -15.14595 -14.92198 -14.71945 -14.56302 -14.44296 -14.30655 -14.21323 -14.15097 -13.81461 -13.67042 -13.55427 -13.48686 -13.19954 -12.95229 -12.54002 -12.39422 -12.37392 -12.13743 -12.04541 -11.91869 -11.68986 -11.60629 -11.56800 -11.36369 -11.29591 -11.22890 -10.66688 -10.39856 -10.16968 -9.86604 -9.85607 -9.75177 -9.63537 -9.27907 -4.83226 0.07954 0.09238 0.25100 0.48282 0.61937 0.82245 1.30330 1.43486 1.45776 1.65944 1.72068 2.05026 2.06096 2.56065 2.91080 3.36298 3.40776 3.46942 3.55862 3.60384 3.66431 3.71446 3.82021 3.90626 3.96208 4.03759 4.04123 4.13749 4.14789 4.19964 4.21692 4.27827 4.34503 4.40382 4.46736 4.53204 4.54925 4.62044 4.67172 4.71067 4.78833 4.81398 4.88300 4.92916 4.95907 4.97287 5.01099 5.09843 5.18349 5.20832 5.32315 5.35237 5.46346 5.57916 5.59263 5.62464 5.65288 5.83921 5.92601 6.06571 6.45461 6.57796 6.62417 7.16299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.052 4.052 3 Si 0.785 3.215 4 C -0.262 4.262 5 C 0.075 3.925 6 N -0.359 5.359 7 C 0.110 3.890 8 C 0.497 3.503 9 O -0.567 6.567 10 N -0.692 5.692 11 C 0.118 3.882 12 H 0.072 0.928 13 C -0.126 4.126 14 C -0.058 4.058 15 H 0.130 0.870 16 C -0.069 4.069 17 C -0.101 4.101 18 C -0.104 4.104 19 Br -0.066 7.066 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.099 4.099 23 C -0.144 4.144 24 N -0.294 5.294 25 C 0.109 3.891 26 C -0.037 4.037 27 C -0.113 4.113 28 C -0.132 4.132 29 C -0.117 4.117 30 C -0.131 4.131 31 C -0.109 4.109 32 H 0.383 0.617 33 H 0.105 0.895 34 H -0.306 1.306 35 H -0.262 1.262 36 H 0.219 0.781 37 H 0.181 0.819 38 H 0.147 0.853 39 H 0.423 0.577 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.153 0.847 45 H 0.157 0.843 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.151 0.849 49 H 0.140 0.860 50 H 0.145 0.855 51 H 0.142 0.858 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.662 7.242 2.861 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.160 4.160 3 Si 0.688 3.312 4 C -0.274 4.274 5 C -0.070 4.070 6 N -0.140 5.140 7 C -0.013 4.013 8 C 0.282 3.718 9 O -0.444 6.444 10 N -0.346 5.346 11 C 0.012 3.988 12 H 0.090 0.910 13 C -0.164 4.164 14 C -0.076 4.076 15 H 0.148 0.852 16 C -0.070 4.070 17 C -0.121 4.121 18 C -0.183 4.183 19 Br 0.020 6.980 20 C -0.128 4.128 21 C -0.133 4.133 22 C -0.117 4.117 23 C -0.183 4.183 24 N -0.115 5.115 25 C -0.056 4.056 26 C -0.039 4.039 27 C -0.132 4.132 28 C -0.150 4.150 29 C -0.135 4.135 30 C -0.148 4.148 31 C -0.128 4.128 32 H 0.233 0.767 33 H 0.123 0.877 34 H -0.234 1.234 35 H -0.187 1.187 36 H 0.236 0.764 37 H 0.198 0.802 38 H 0.164 0.836 39 H 0.262 0.738 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.147 0.853 43 H 0.154 0.846 44 H 0.171 0.829 45 H 0.174 0.826 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.168 0.832 49 H 0.158 0.842 50 H 0.163 0.837 51 H 0.160 0.840 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.683 6.114 3.382 11.144 hybrid contribution -1.277 0.168 0.210 1.305 sum 7.405 6.282 3.592 10.354 Atomic orbital electron populations 1.86456 1.19210 1.79749 1.50080 1.24641 0.82753 1.12237 0.96414 0.94061 0.89699 0.70156 0.77298 1.20552 1.14088 0.92298 1.00417 1.22840 0.98281 0.96727 0.89170 1.48133 1.48116 1.03575 1.14210 1.22016 0.96944 1.06425 0.75918 1.21178 0.86007 0.80277 0.84318 1.90834 1.27945 1.44016 1.81639 1.45384 1.28158 1.56334 1.04745 1.21734 0.93695 0.95667 0.87740 0.91018 1.23356 1.02121 0.96814 0.94080 1.21677 0.98520 0.98853 0.88565 0.85223 1.19866 0.94455 0.96460 0.96232 1.21081 0.97957 0.99712 0.93305 1.21944 0.97103 1.02789 0.96488 1.96762 1.40531 1.71855 1.88866 1.21359 0.95377 0.96204 0.99901 1.21515 0.96420 0.98550 0.96782 1.21565 0.99637 0.97700 0.92804 1.23579 0.97554 1.00286 0.96864 1.77690 1.20554 1.04260 1.09004 1.20849 0.98701 0.93688 0.92335 1.18042 0.97021 0.92614 0.96190 1.21988 0.95229 1.01335 0.94644 1.21408 1.00790 0.93756 0.99021 1.21586 0.95459 0.97387 0.99094 1.21355 0.97447 0.99808 0.96233 1.21320 1.00038 0.92818 0.98609 0.76719 0.87705 1.23425 1.18741 0.76447 0.80218 0.83591 0.73816 0.89247 0.88581 0.85254 0.84623 0.82922 0.82577 0.90750 0.89815 0.83154 0.84239 0.83729 0.83985 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.02 10.10 -148.98 -1.50 -3.52 16 2 C -0.05 -0.07 2.00 71.24 0.14 0.08 16 3 Si 0.79 -3.24 30.80 68.60 2.11 -1.13 16 4 C -0.26 -0.99 5.34 -19.95 -0.11 -1.10 16 5 C 0.08 -0.13 9.96 83.47 0.83 0.70 16 6 N -0.36 -0.67 3.40 -351.92 -1.20 -1.86 16 7 C 0.11 -0.89 6.99 85.63 0.60 -0.29 16 8 C 0.50 -0.06 7.86 87.66 0.69 0.63 16 9 O -0.57 -7.63 15.31 -3.01 -0.05 -7.68 16 10 N -0.69 4.93 5.26 -440.03 -2.32 2.61 16 11 C 0.12 -0.36 4.32 45.52 0.20 -0.16 16 12 H 0.07 0.33 7.47 -2.39 -0.02 0.31 16 13 C -0.13 0.87 7.28 31.12 0.23 1.10 16 14 C -0.06 0.47 3.87 -10.92 -0.04 0.43 16 15 H 0.13 -1.74 8.10 -2.39 -0.02 -1.76 16 16 C -0.07 0.27 5.29 -19.87 -0.11 0.16 16 17 C -0.10 -0.02 8.37 22.29 0.19 0.17 16 18 C -0.10 -0.24 6.22 22.31 0.14 -0.10 16 19 Br -0.07 -0.27 33.70 -20.37 -0.69 -0.95 16 20 C -0.11 0.01 9.79 22.29 0.22 0.23 16 21 C -0.11 0.44 10.05 22.27 0.22 0.66 16 22 C -0.10 0.55 9.71 22.27 0.22 0.77 16 23 C -0.14 0.57 7.26 31.21 0.23 0.80 16 24 N -0.29 -3.39 11.64 -48.16 -0.56 -3.95 16 25 C 0.11 1.18 6.74 42.53 0.29 1.46 16 26 C -0.04 -0.43 5.80 -20.04 -0.12 -0.55 16 27 C -0.11 -1.13 8.95 22.48 0.20 -0.93 16 28 C -0.13 -0.93 10.03 22.24 0.22 -0.70 16 29 C -0.12 -0.64 10.04 22.31 0.22 -0.41 16 30 C -0.13 -0.87 10.03 22.24 0.22 -0.65 16 31 C -0.11 -1.12 9.75 22.48 0.22 -0.90 16 32 H 0.38 -0.62 8.70 -74.06 -0.64 -1.26 16 33 H 0.10 0.28 7.84 -2.39 -0.02 0.26 16 34 H -0.31 -1.35 7.11 99.48 0.71 -0.64 16 35 H -0.26 0.98 6.99 99.48 0.70 1.68 16 36 H 0.22 -2.43 6.33 -2.91 -0.02 -2.45 16 37 H 0.18 -3.38 8.07 -2.39 -0.02 -3.40 16 38 H 0.15 -1.92 8.14 -2.39 -0.02 -1.94 16 39 H 0.42 -6.67 8.70 -92.71 -0.81 -7.48 16 40 H 0.09 -0.40 7.73 -2.39 -0.02 -0.42 16 41 H 0.10 -0.94 8.14 -2.39 -0.02 -0.96 16 42 H 0.13 0.00 6.64 -2.91 -0.02 -0.02 16 43 H 0.14 -0.22 8.06 -2.91 -0.02 -0.25 16 44 H 0.15 -1.28 8.06 -2.91 -0.02 -1.30 16 45 H 0.16 -1.77 8.06 -2.91 -0.02 -1.79 16 46 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 47 H 0.08 -0.12 6.31 -2.39 -0.02 -0.14 16 48 H 0.15 1.46 4.52 -2.91 -0.01 1.45 16 49 H 0.14 0.41 8.06 -2.91 -0.02 0.38 16 50 H 0.14 0.03 8.06 -2.91 -0.02 0.01 16 51 H 0.14 0.27 8.06 -2.91 -0.02 0.25 16 52 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16 Total: 0.00 -33.93 451.22 0.28 -33.65 By element: Atomic # 1 Polarization: -18.14 SS G_CDS: -0.43 Total: -18.57 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 4.90 Total: 1.41 kcal Atomic # 7 Polarization: 0.87 SS G_CDS: -4.07 Total: -3.20 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -1.55 Total: -11.20 kcal Atomic # 14 Polarization: -3.24 SS G_CDS: 2.11 Total: -1.13 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -0.69 Total: -0.95 kcal Total: -33.93 0.28 -33.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_12622748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.572 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds