Wall clock time and date at job start Sun Mar 7 2021 01:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86296 * 109.47164 * 2 1 4 4 C 1.50700 * 109.47515 * 120.00261 * 2 1 3 5 5 C 1.34835 * 125.65249 * 64.99756 * 4 2 1 6 6 C 1.40799 * 107.05060 * 180.02562 * 5 4 2 7 7 C 1.36106 * 106.73073 * 0.02562 * 6 5 4 8 8 C 1.47567 * 125.94113 * 179.97438 * 7 6 5 9 9 C 1.39570 * 119.95390 * 179.97438 * 8 7 6 10 10 C 1.38321 * 119.81071 * 179.74475 * 9 8 7 11 11 O 1.35679 * 120.13601 * 180.27795 * 10 9 8 12 12 C 1.40368 * 119.72536 * 0.52672 * 10 9 8 13 13 C 1.47296 * 120.04441 * 179.74794 * 12 10 9 14 14 O 1.21619 * 119.99993 * 359.45075 * 13 12 10 15 15 N 1.34777 * 119.99907 * 179.72141 * 13 12 10 16 16 C 1.46496 * 119.99875 * 179.97438 * 15 13 12 17 17 H 1.08999 * 112.85295 * 336.20319 * 16 15 13 18 18 C 1.53782 * 113.61172 * 107.50721 * 16 15 13 19 19 C 1.53786 * 87.08272 * 89.11850 * 18 16 15 20 20 H 1.09005 * 113.61007 * 270.88442 * 19 18 16 21 21 C 1.50698 * 113.61743 * 139.98646 * 19 18 16 22 22 C 1.38220 * 119.98903 * 322.22028 * 21 19 18 23 23 C 1.38268 * 120.02002 * 179.77418 * 22 21 19 24 24 C 1.38205 * 120.00665 * 0.50316 * 23 22 21 25 25 C 1.38354 * 119.98668 * 359.75498 * 24 23 22 26 26 Br 1.89092 * 120.00604 * 179.97438 * 25 24 23 27 27 C 1.38229 * 119.99729 * 142.50321 * 21 19 18 28 28 C 1.53776 * 87.07821 * 25.43195 * 19 18 16 29 29 C 1.39918 * 119.90811 * 359.47103 * 12 10 9 30 30 C 1.36390 * 120.18474 * 0.27540 * 29 12 10 31 31 O 1.34231 * 125.65611 * 245.27062 * 4 2 1 32 32 H 0.96697 * 113.99872 * 299.99750 * 1 2 3 33 33 H 1.08998 * 109.47186 * 240.00095 * 2 1 3 34 34 H 1.48501 * 110.00335 * 300.00095 * 3 2 1 35 35 H 1.48504 * 109.99999 * 61.32048 * 3 2 1 36 36 H 1.08002 * 126.47709 * 0.02562 * 5 4 2 37 37 H 1.07993 * 126.63304 * 179.97438 * 6 5 4 38 38 H 1.07994 * 120.09581 * 0.02562 * 9 8 7 39 39 H 0.96696 * 113.99776 * 270.24933 * 11 10 9 40 40 H 0.96999 * 120.00043 * 0.02562 * 15 13 12 41 41 H 1.09004 * 113.61778 * 203.66353 * 18 16 15 42 42 H 1.08996 * 113.61871 * 334.56655 * 18 16 15 43 43 H 1.08004 * 119.99428 * 0.02562 * 22 21 19 44 44 H 1.07998 * 119.99957 * 180.23597 * 23 22 21 45 45 H 1.07990 * 120.00548 * 179.72776 * 24 23 22 46 46 H 1.07995 * 120.00744 * 359.97438 * 27 21 19 47 47 H 1.09006 * 113.61290 * 220.01878 * 28 19 18 48 48 H 1.08995 * 113.61778 * 89.12530 * 28 19 18 49 49 H 1.08003 * 119.90426 * 180.25012 * 29 12 10 50 50 H 1.07995 * 119.86064 * 179.97438 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7569 -2.0180 1.5092 6 6 2.3802 -2.2629 2.7478 7 6 2.9067 -1.0782 3.1624 8 6 3.6547 -0.8537 4.4145 9 6 4.1417 0.4189 4.7167 10 6 4.8379 0.6271 5.8936 11 8 5.3094 1.8627 6.1967 12 6 5.0590 -0.4462 6.7707 13 6 5.8043 -0.2336 8.0233 14 8 6.2371 0.8704 8.2935 15 7 6.0112 -1.2636 8.8675 16 6 6.7529 -1.0523 10.1130 17 1 7.4193 -0.1909 10.0679 18 6 5.8675 -1.0833 11.3700 19 6 6.1200 -2.5996 11.4147 20 1 5.3951 -3.1799 10.8437 21 6 6.3342 -3.1352 12.8068 22 6 7.0425 -2.3915 13.7318 23 6 7.2355 -2.8803 15.0108 24 6 6.7290 -4.1174 15.3616 25 6 6.0245 -4.8644 14.4344 26 35 5.3319 -6.5574 14.9136 27 6 5.8273 -4.3727 13.1568 28 6 7.4269 -2.3249 10.6523 29 6 4.5655 -1.7172 6.4563 30 6 3.8751 -1.9173 5.2972 31 8 2.6225 -0.1454 2.2329 32 1 -0.3933 0.4417 0.7651 33 1 1.7923 -0.5138 -0.8900 34 1 1.5615 2.4679 -1.2085 35 1 1.5879 2.4585 1.2243 36 1 1.2371 -2.7411 0.8981 37 1 2.4302 -3.2077 3.2684 38 1 3.9716 1.2396 4.0357 39 1 6.2018 2.0350 5.8665 40 1 5.6697 -2.1451 8.6500 41 1 6.2926 -0.5448 12.2170 42 1 4.8275 -0.8193 11.1782 43 1 7.4420 -1.4265 13.4568 44 1 7.7857 -2.2972 15.7344 45 1 6.8835 -4.5010 16.3592 46 1 5.2775 -4.9556 12.4327 47 1 7.6459 -3.0634 9.8809 48 1 8.2784 -2.1260 11.3029 49 1 4.7322 -2.5422 7.1331 50 1 3.4969 -2.9005 5.0595 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:38:36 Heat of formation + Delta-G solvation = 3.768157 kcal Electronic energy + Delta-G solvation = -36145.308160 eV Core-core repulsion = 31118.513758 eV Total energy + Delta-G solvation = -5026.794401 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 470.061 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -43.74463 -41.84662 -41.03607 -39.81862 -38.65557 -38.19271 -37.85561 -34.86964 -34.20619 -33.45002 -33.02080 -31.98195 -31.28408 -30.46770 -30.06196 -27.26200 -26.68243 -26.15538 -24.51286 -24.05762 -23.52712 -22.77683 -22.30469 -22.03769 -21.36593 -20.15094 -19.63199 -18.89618 -18.60514 -18.01593 -17.68525 -17.52301 -17.24952 -16.73047 -16.63363 -16.36428 -16.13824 -16.07937 -15.89592 -15.82197 -15.45961 -15.11000 -14.94219 -14.59353 -14.48087 -14.43488 -14.33036 -14.16750 -13.97566 -13.80019 -13.64317 -13.55288 -13.42916 -13.35213 -12.96606 -12.89011 -12.70563 -12.32158 -12.19875 -12.00319 -11.92109 -11.87913 -11.52908 -11.34906 -11.14811 -11.13317 -10.93706 -10.84916 -10.62881 -10.10688 -9.94981 -9.84007 -9.59945 -9.01636 -5.00052 -0.79321 0.10409 0.14956 0.29049 0.64159 0.64712 1.12239 1.42984 1.44879 1.69514 1.87863 1.91937 2.01985 2.58181 2.64725 3.02045 3.20883 3.36002 3.45423 3.59203 3.63299 3.64493 3.74148 3.86914 3.89130 3.97674 3.99252 4.00983 4.11112 4.12932 4.22683 4.30368 4.37081 4.42442 4.43832 4.61126 4.66662 4.68225 4.71274 4.78447 4.79230 4.85477 4.91119 4.95022 4.99521 5.03405 5.06741 5.10272 5.15498 5.22076 5.23175 5.37617 5.43281 5.48243 5.54130 5.64764 5.84933 5.95911 6.30420 6.47472 6.71217 7.17205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.033 4.033 3 Si 0.763 3.237 4 C -0.051 4.051 5 C -0.181 4.181 6 C -0.172 4.172 7 C 0.005 3.995 8 C 0.025 3.975 9 C -0.153 4.153 10 C 0.161 3.839 11 O -0.496 6.496 12 C -0.179 4.179 13 C 0.559 3.441 14 O -0.562 6.562 15 N -0.696 5.696 16 C 0.116 3.884 17 H 0.088 0.912 18 C -0.144 4.144 19 C -0.066 4.066 20 H 0.113 0.887 21 C -0.066 4.066 22 C -0.106 4.106 23 C -0.114 4.114 24 C -0.109 4.109 25 C -0.103 4.103 26 Br -0.061 7.061 27 C -0.096 4.096 28 C -0.122 4.122 29 C -0.051 4.051 30 C -0.110 4.110 31 O -0.177 6.177 32 H 0.389 0.611 33 H 0.158 0.842 34 H -0.280 1.280 35 H -0.298 1.298 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.137 0.863 39 H 0.409 0.591 40 H 0.414 0.586 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.172 0.828 50 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 -5.289 -1.657 6.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.143 4.143 3 Si 0.668 3.332 4 C -0.101 4.101 5 C -0.200 4.200 6 C -0.191 4.191 7 C -0.044 4.044 8 C 0.025 3.975 9 C -0.172 4.172 10 C 0.115 3.885 11 O -0.309 6.309 12 C -0.183 4.183 13 C 0.347 3.653 14 O -0.441 6.441 15 N -0.348 5.348 16 C 0.010 3.990 17 H 0.106 0.894 18 C -0.182 4.182 19 C -0.084 4.084 20 H 0.132 0.868 21 C -0.067 4.067 22 C -0.124 4.124 23 C -0.133 4.133 24 C -0.128 4.128 25 C -0.182 4.182 26 Br 0.024 6.976 27 C -0.116 4.116 28 C -0.160 4.160 29 C -0.069 4.069 30 C -0.128 4.128 31 O -0.075 6.075 32 H 0.239 0.761 33 H 0.175 0.825 34 H -0.207 1.207 35 H -0.225 1.225 36 H 0.184 0.816 37 H 0.199 0.801 38 H 0.155 0.845 39 H 0.269 0.731 40 H 0.253 0.747 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.164 0.836 44 H 0.167 0.833 45 H 0.154 0.846 46 H 0.158 0.842 47 H 0.110 0.890 48 H 0.122 0.878 49 H 0.190 0.810 50 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.521 -4.247 -1.533 5.171 hybrid contribution -0.870 0.024 0.332 0.931 sum 1.651 -4.223 -1.201 4.691 Atomic orbital electron populations 1.86638 1.17261 1.80356 1.50027 1.24467 0.83507 1.11960 0.94325 0.93667 0.90492 0.72141 0.76911 1.23155 1.00716 0.94197 0.92082 1.21842 1.03990 0.95764 0.98425 1.22246 1.00801 0.98944 0.97080 1.20588 1.04612 0.87879 0.91359 1.17958 0.95339 0.93966 0.90271 1.21573 1.01103 0.97656 0.96874 1.18492 0.94638 0.84158 0.91246 1.84730 1.37518 1.28434 1.80223 1.20515 1.05534 0.95315 0.96889 1.18206 0.79209 0.84287 0.83550 1.90823 1.51552 1.25294 1.76428 1.45450 1.56680 1.12260 1.20433 1.21852 0.94228 0.99853 0.83018 0.89375 1.23582 1.00782 0.95618 0.98235 1.21624 0.99115 0.95877 0.91799 0.86845 1.19837 0.97150 0.93485 0.96215 1.21445 0.97440 1.00522 0.92963 1.21457 0.99365 0.95158 0.97323 1.21344 0.97019 0.95034 0.99446 1.21968 1.04802 0.93794 0.97668 1.96758 1.85361 1.22378 1.93089 1.21185 0.99694 0.96205 0.94530 1.23381 0.96783 0.96153 0.99679 1.21169 0.93891 0.95137 0.96714 1.21053 0.99336 0.99383 0.92986 1.83934 1.58184 1.38491 1.26847 0.76078 0.82462 1.20677 1.22489 0.81553 0.80050 0.84496 0.73055 0.74696 0.88240 0.91621 0.83650 0.83303 0.84605 0.84207 0.89048 0.87823 0.81028 0.81325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.33 12.88 -148.98 -1.92 -2.25 16 2 C -0.03 0.06 2.98 71.24 0.21 0.28 16 3 Si 0.76 -0.68 32.11 68.60 2.20 1.52 16 4 C -0.05 -0.02 6.21 24.90 0.15 0.13 16 5 C -0.18 0.15 10.78 22.11 0.24 0.39 16 6 C -0.17 0.38 10.26 22.40 0.23 0.61 16 7 C 0.00 0.00 7.02 24.24 0.17 0.17 16 8 C 0.03 -0.01 5.87 -20.08 -0.12 -0.12 16 9 C -0.15 -0.40 9.65 22.61 0.22 -0.18 16 10 C 0.16 0.69 6.71 22.81 0.15 0.84 16 11 O -0.50 -3.41 11.56 -68.97 -0.80 -4.20 16 12 C -0.18 -0.18 5.89 -19.97 -0.12 -0.30 16 13 C 0.56 2.09 7.75 86.63 0.67 2.77 16 14 O -0.56 -7.00 14.74 16.90 0.25 -6.75 16 15 N -0.70 2.64 5.21 -443.43 -2.31 0.33 16 16 C 0.12 -0.40 4.33 45.52 0.20 -0.20 16 17 H 0.09 0.10 7.46 -2.39 -0.02 0.08 16 18 C -0.14 0.59 7.25 31.12 0.23 0.82 16 19 C -0.07 0.45 3.86 -11.01 -0.04 0.41 16 20 H 0.11 -1.08 8.10 -2.38 -0.02 -1.10 16 21 C -0.07 0.22 5.29 -19.87 -0.11 0.12 16 22 C -0.11 0.38 8.60 22.27 0.19 0.57 16 23 C -0.11 0.29 10.05 22.27 0.22 0.51 16 24 C -0.11 -0.01 9.79 22.29 0.22 0.21 16 25 C -0.10 -0.14 6.22 22.31 0.14 0.00 16 26 Br -0.06 -0.15 33.70 -20.37 -0.69 -0.83 16 27 C -0.10 0.10 9.45 22.28 0.21 0.31 16 28 C -0.12 0.95 7.29 31.12 0.23 1.17 16 29 C -0.05 0.32 9.47 22.25 0.21 0.53 16 30 C -0.11 0.65 9.48 22.26 0.21 0.86 16 31 O -0.18 -0.50 8.79 -5.93 -0.05 -0.55 16 32 H 0.39 -1.57 8.70 -74.06 -0.64 -2.21 16 33 H 0.16 -0.94 7.96 -2.39 -0.02 -0.96 16 34 H -0.28 -1.25 7.11 99.48 0.71 -0.54 16 35 H -0.30 -1.83 7.11 99.48 0.71 -1.12 16 36 H 0.17 -0.60 8.06 -2.91 -0.02 -0.62 16 37 H 0.18 -1.52 7.24 -2.91 -0.02 -1.54 16 38 H 0.14 0.37 7.89 -2.91 -0.02 0.35 16 39 H 0.41 -0.20 9.06 -74.06 -0.67 -0.87 16 40 H 0.41 -4.36 6.71 -92.71 -0.62 -4.98 16 41 H 0.10 -0.47 6.32 -2.38 -0.02 -0.48 16 42 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.15 -1.03 6.67 -2.91 -0.02 -1.05 16 44 H 0.15 -0.96 8.06 -2.91 -0.02 -0.98 16 45 H 0.14 -0.21 8.06 -2.92 -0.02 -0.24 16 46 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 47 H 0.09 -0.88 8.14 -2.38 -0.02 -0.90 16 48 H 0.10 -0.82 7.71 -2.39 -0.02 -0.84 16 49 H 0.17 -2.46 6.38 -2.91 -0.02 -2.48 16 50 H 0.17 -2.04 6.95 -2.91 -0.02 -2.06 16 Total: 0.00 -25.59 443.06 -0.44 -26.03 By element: Atomic # 1 Polarization: -22.36 SS G_CDS: -0.85 Total: -23.20 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 3.72 Total: 9.90 kcal Atomic # 7 Polarization: 2.64 SS G_CDS: -2.31 Total: 0.33 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -2.52 Total: -13.75 kcal Atomic # 14 Polarization: -0.68 SS G_CDS: 2.20 Total: 1.52 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.69 Total: -0.83 kcal Total: -25.59 -0.44 -26.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.795 kcal (2) G-P(sol) polarization free energy of solvation -25.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds