Wall clock time and date at job start Sun Mar 7 2021 01:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86305 * 109.47210 * 2 1 4 4 C 1.50699 * 109.47615 * 120.00310 * 2 1 3 5 5 C 1.38330 * 119.87171 * 64.99460 * 4 2 1 6 6 C 1.37997 * 120.13109 * 180.02562 * 5 4 2 7 7 C 1.39403 * 119.86966 * 0.02562 * 6 5 4 8 8 C 1.48271 * 120.12907 * 179.97438 * 7 6 5 9 9 C 1.39508 * 119.97645 * 179.97438 * 8 7 6 10 10 C 1.37669 * 120.02270 * 179.97438 * 9 8 7 11 11 C 1.39705 * 119.97624 * 359.97438 * 10 9 8 12 12 C 1.47718 * 120.02515 * 179.97438 * 11 10 9 13 13 O 1.21578 * 119.99681 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00347 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00033 * 180.02562 * 14 12 11 16 16 H 1.08992 * 112.90684 * 336.24748 * 15 14 12 17 17 C 1.54049 * 113.61276 * 107.61836 * 15 14 12 18 18 C 1.53781 * 87.08031 * 89.07129 * 17 15 14 19 19 H 1.08999 * 113.61181 * 270.87794 * 18 17 15 20 20 C 1.50696 * 113.69134 * 139.98880 * 18 17 15 21 21 C 1.38226 * 119.99481 * 322.18666 * 20 18 17 22 22 C 1.38260 * 120.01757 * 179.77057 * 21 20 18 23 23 C 1.38202 * 120.01215 * 0.50820 * 22 21 20 24 24 C 1.38342 * 119.98674 * 359.74408 * 23 22 21 25 25 Br 1.89104 * 120.00910 * 180.02562 * 24 23 22 26 26 C 1.38242 * 119.99495 * 142.46392 * 20 18 17 27 27 C 1.53781 * 87.08070 * 25.42738 * 18 17 15 28 28 C 1.39703 * 119.95210 * 0.25534 * 11 10 9 29 29 C 1.37666 * 119.97819 * 359.51016 * 28 11 10 30 30 C 1.39407 * 119.74514 * 0.24282 * 7 6 5 31 31 C 1.38002 * 119.86802 * 359.48085 * 30 7 6 32 32 H 0.96700 * 114.00301 * 59.99809 * 1 2 3 33 33 H 1.09005 * 109.47401 * 240.00487 * 2 1 3 34 34 H 1.48502 * 109.99751 * 60.00249 * 3 2 1 35 35 H 1.48498 * 110.00213 * 181.31965 * 3 2 1 36 36 H 1.08001 * 119.93483 * 359.97438 * 5 4 2 37 37 H 1.08001 * 120.07044 * 180.02562 * 6 5 4 38 38 H 1.07997 * 119.98908 * 359.97438 * 9 8 7 39 39 H 1.08001 * 120.01058 * 179.97438 * 10 9 8 40 40 H 0.97002 * 120.00078 * 359.97438 * 14 12 11 41 41 H 1.09005 * 113.62125 * 334.52173 * 17 15 14 42 42 H 1.08996 * 113.68970 * 203.62749 * 17 15 14 43 43 H 1.07999 * 119.98598 * 0.02562 * 21 20 18 44 44 H 1.08002 * 119.99391 * 180.23413 * 22 21 20 45 45 H 1.07999 * 120.00438 * 179.72877 * 23 22 21 46 46 H 1.08000 * 120.00665 * 359.97438 * 26 20 18 47 47 H 1.09002 * 113.61445 * 89.11830 * 27 18 17 48 48 H 1.09002 * 113.61408 * 219.93560 * 27 18 17 49 49 H 1.07999 * 120.01502 * 179.74499 * 28 11 10 50 50 H 1.07997 * 119.99255 * 180.23465 * 29 28 11 51 51 H 1.07996 * 120.06411 * 179.74525 * 30 7 6 52 52 H 1.08002 * 119.93348 * 180.28938 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6831 -2.0612 1.3957 6 6 2.1402 -2.7170 2.5205 7 6 2.8531 -2.0154 3.4916 8 6 3.3465 -2.7142 4.7027 9 6 4.0600 -2.0090 5.6722 10 6 4.5181 -2.6568 6.7973 11 6 4.2677 -4.0205 6.9682 12 6 4.7592 -4.7167 8.1748 13 8 5.3815 -4.1028 9.0197 14 7 4.5179 -6.0325 8.3390 15 6 5.0049 -6.7228 9.5360 16 1 5.8579 -6.2240 9.9958 17 6 3.8898 -7.0887 10.5339 18 6 3.7433 -8.4119 9.7641 19 1 3.0367 -8.3592 8.9358 20 6 3.5153 -9.6074 10.6527 21 6 4.1713 -9.7019 11.8657 22 6 3.9588 -10.7962 12.6836 23 6 3.0984 -11.8012 12.2839 24 6 2.4457 -11.7095 11.0676 25 35 1.2677 -13.0839 10.5203 26 6 2.6545 -10.6121 10.2521 27 6 5.2094 -8.2337 9.3353 28 6 3.5572 -4.7267 5.9944 29 6 3.0959 -4.0760 4.8724 30 6 3.0955 -0.6530 3.3223 31 6 2.6383 -0.0091 2.1905 32 1 -0.3934 0.4417 -0.7650 33 1 1.7923 -0.5138 -0.8901 34 1 1.5615 2.4679 1.2086 35 1 3.5345 1.7703 -0.0321 36 1 1.1296 -2.6035 0.6433 37 1 1.9462 -3.7717 2.6484 38 1 4.2531 -0.9547 5.5400 39 1 5.0708 -2.1108 7.5475 40 1 4.0211 -6.5223 7.6650 41 1 3.0134 -6.4442 10.4652 42 1 4.2425 -7.2158 11.5573 43 1 4.8468 -8.9187 12.1765 44 1 4.4686 -10.8679 13.6330 45 1 2.9359 -12.6581 12.9208 46 1 2.1451 -10.5402 9.3025 47 1 5.9242 -8.6737 10.0306 48 1 5.3986 -8.5150 8.2993 49 1 3.3667 -5.7818 6.1236 50 1 2.5433 -4.6209 4.1213 51 1 3.6436 -0.1036 4.0733 52 1 2.8296 1.0453 2.0561 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:38:48 Heat of formation + Delta-G solvation = 52.374723 kcal Electronic energy + Delta-G solvation = -34407.588317 eV Core-core repulsion = 29736.502279 eV Total energy + Delta-G solvation = -4671.086038 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 464.077 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.82587 -41.15585 -40.53951 -39.44699 -38.68402 -37.51471 -34.97003 -34.08807 -33.17796 -32.69636 -32.11146 -31.66325 -30.85933 -30.09448 -27.26090 -26.71411 -26.18928 -24.78037 -24.48292 -23.53965 -22.85149 -22.56684 -22.26354 -21.40214 -20.13722 -19.26566 -18.38800 -18.31449 -17.93579 -17.36358 -16.97019 -16.80168 -16.50467 -16.29864 -16.08373 -15.95620 -15.77759 -15.48010 -15.16606 -15.14026 -15.03323 -14.83513 -14.62429 -14.49526 -14.44305 -14.30626 -14.23037 -13.90431 -13.70204 -13.56272 -13.43638 -13.28907 -12.93737 -12.89996 -12.58376 -12.33861 -12.29687 -12.03406 -11.93755 -11.92350 -11.78958 -11.55644 -11.38047 -11.18514 -11.15931 -10.85866 -10.29695 -10.17720 -10.13180 -10.10249 -9.85897 -9.61958 -9.16992 -4.97257 -0.78173 0.08652 0.22793 0.27104 0.28869 0.39815 0.63078 1.28118 1.60609 1.71536 1.94458 1.97466 2.48644 2.56472 2.90818 3.30208 3.39981 3.42772 3.52452 3.59193 3.63234 3.70273 3.74437 3.81936 3.86388 3.88604 3.94273 3.97452 4.08282 4.11072 4.16967 4.19757 4.23891 4.28210 4.40726 4.41875 4.53009 4.58517 4.61979 4.66183 4.75024 4.76409 4.81653 4.83105 4.92517 4.95980 4.96978 4.99916 5.02788 5.10099 5.11063 5.18892 5.21179 5.30555 5.35615 5.36488 5.44810 5.53961 5.60695 5.72055 5.79744 5.83085 6.40427 6.89054 7.07966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.077 4.077 3 Si 0.768 3.232 4 C -0.088 4.088 5 C -0.096 4.096 6 C -0.102 4.102 7 C -0.059 4.059 8 C -0.024 4.024 9 C -0.126 4.126 10 C -0.069 4.069 11 C -0.150 4.150 12 C 0.560 3.440 13 O -0.579 6.579 14 N -0.694 5.694 15 C 0.113 3.887 16 H 0.089 0.911 17 C -0.142 4.142 18 C -0.066 4.066 19 H 0.112 0.888 20 C -0.066 4.066 21 C -0.105 4.105 22 C -0.114 4.114 23 C -0.108 4.108 24 C -0.103 4.103 25 Br -0.061 7.061 26 C -0.097 4.097 27 C -0.123 4.123 28 C -0.071 4.071 29 C -0.117 4.117 30 C -0.110 4.110 31 C -0.143 4.143 32 H 0.404 0.596 33 H 0.098 0.902 34 H -0.299 1.299 35 H -0.290 1.290 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.141 0.859 39 H 0.128 0.872 40 H 0.415 0.585 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.105 0.895 48 H 0.089 0.911 49 H 0.162 0.838 50 H 0.160 0.840 51 H 0.140 0.860 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.264 -1.467 -6.139 6.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.187 4.187 3 Si 0.675 3.325 4 C -0.088 4.088 5 C -0.114 4.114 6 C -0.120 4.120 7 C -0.059 4.059 8 C -0.024 4.024 9 C -0.144 4.144 10 C -0.088 4.088 11 C -0.153 4.153 12 C 0.349 3.651 13 O -0.459 6.459 14 N -0.345 5.345 15 C 0.007 3.993 16 H 0.107 0.893 17 C -0.180 4.180 18 C -0.084 4.084 19 H 0.130 0.870 20 C -0.067 4.067 21 C -0.124 4.124 22 C -0.133 4.133 23 C -0.128 4.128 24 C -0.182 4.182 25 Br 0.024 6.976 26 C -0.117 4.117 27 C -0.161 4.161 28 C -0.090 4.090 29 C -0.134 4.134 30 C -0.128 4.128 31 C -0.160 4.160 32 H 0.255 0.745 33 H 0.116 0.884 34 H -0.227 1.227 35 H -0.218 1.218 36 H 0.164 0.836 37 H 0.175 0.825 38 H 0.158 0.842 39 H 0.146 0.854 40 H 0.254 0.746 41 H 0.086 0.914 42 H 0.120 0.880 43 H 0.164 0.836 44 H 0.168 0.832 45 H 0.155 0.845 46 H 0.157 0.843 47 H 0.123 0.877 48 H 0.107 0.893 49 H 0.179 0.821 50 H 0.177 0.823 51 H 0.158 0.842 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.709 -1.307 -4.795 5.020 hybrid contribution 0.167 -0.114 0.419 0.465 sum -0.542 -1.421 -4.375 4.632 Atomic orbital electron populations 1.86438 1.17026 1.82360 1.51471 1.24772 0.85992 1.10582 0.97359 0.94469 0.77358 0.75980 0.84713 1.19841 0.98132 0.95118 0.95698 1.21215 0.98406 0.93468 0.98326 1.21638 0.96202 1.01373 0.92763 1.18941 0.99288 0.93280 0.94424 1.19113 0.96246 0.94183 0.92903 1.21346 0.98576 1.01013 0.93431 1.21238 0.96895 0.93580 0.97117 1.19993 1.04222 0.95036 0.96027 1.18496 0.78550 0.82362 0.85705 1.90779 1.42525 1.67038 1.45595 1.45461 1.57035 1.08476 1.23569 1.21946 0.97599 0.93466 0.86253 0.89331 1.23617 0.99072 0.95942 0.99371 1.21608 0.98265 0.90911 0.97640 0.86972 1.19825 0.96008 0.95400 0.95483 1.21443 0.99013 0.98339 0.93559 1.21458 0.97662 0.93294 1.00835 1.21348 0.96433 1.00240 0.94757 1.21965 1.01299 0.96114 0.98826 1.96759 1.61319 1.48486 1.90992 1.21185 0.98444 0.92320 0.99716 1.23388 0.95974 0.92829 1.03892 1.21496 0.94490 1.00947 0.92046 1.21483 1.00175 0.93141 0.98619 1.21384 0.99582 0.94343 0.97476 1.20976 1.00765 0.99084 0.95197 0.74473 0.88437 1.22728 1.21790 0.83600 0.82507 0.84170 0.85380 0.74626 0.91444 0.88049 0.83622 0.83234 0.84532 0.84284 0.87704 0.89252 0.82062 0.82258 0.84224 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.63 12.81 -148.98 -1.91 -1.28 16 2 C -0.08 0.10 2.79 71.24 0.20 0.30 16 3 Si 0.77 -1.38 29.84 68.60 2.05 0.67 16 4 C -0.09 -0.34 5.39 -19.82 -0.11 -0.44 16 5 C -0.10 -0.15 9.67 22.23 0.21 0.07 16 6 C -0.10 -0.01 9.43 22.49 0.21 0.20 16 7 C -0.06 -0.15 5.88 -20.05 -0.12 -0.27 16 8 C -0.02 -0.03 5.88 -20.00 -0.12 -0.15 16 9 C -0.13 -0.32 9.41 22.44 0.21 -0.11 16 10 C -0.07 -0.32 9.58 22.49 0.22 -0.11 16 11 C -0.15 -0.40 5.88 -20.06 -0.12 -0.52 16 12 C 0.56 2.96 7.77 86.75 0.67 3.63 16 13 O -0.58 -8.15 15.93 -3.96 -0.06 -8.21 16 14 N -0.69 1.51 5.21 -442.58 -2.31 -0.80 16 15 C 0.11 -0.26 4.34 45.61 0.20 -0.06 16 16 H 0.09 0.20 7.46 -2.39 -0.02 0.19 16 17 C -0.14 0.51 7.27 31.21 0.23 0.73 16 18 C -0.07 0.40 3.85 -11.01 -0.04 0.35 16 19 H 0.11 -0.94 8.09 -2.39 -0.02 -0.96 16 20 C -0.07 0.18 5.29 -19.87 -0.11 0.08 16 21 C -0.11 0.33 8.60 22.27 0.19 0.53 16 22 C -0.11 0.25 10.05 22.27 0.22 0.48 16 23 C -0.11 -0.04 9.79 22.29 0.22 0.18 16 24 C -0.10 -0.19 6.22 22.31 0.14 -0.05 16 25 Br -0.06 -0.17 33.70 -20.37 -0.69 -0.86 16 26 C -0.10 0.04 9.45 22.29 0.21 0.26 16 27 C -0.12 0.81 7.28 31.12 0.23 1.03 16 28 C -0.07 0.25 9.52 22.49 0.21 0.46 16 29 C -0.12 0.33 9.41 22.44 0.21 0.54 16 30 C -0.11 -0.44 9.43 22.50 0.21 -0.23 16 31 C -0.14 -0.78 8.65 22.24 0.19 -0.59 16 32 H 0.40 -4.68 8.74 -74.06 -0.65 -5.33 16 33 H 0.10 -0.56 7.96 -2.38 -0.02 -0.58 16 34 H -0.30 -1.83 7.04 99.48 0.70 -1.13 16 35 H -0.29 -1.14 7.11 99.48 0.71 -0.44 16 36 H 0.15 -0.30 8.06 -2.91 -0.02 -0.32 16 37 H 0.16 -0.94 6.19 -2.91 -0.02 -0.96 16 38 H 0.14 -0.02 6.19 -2.91 -0.02 -0.03 16 39 H 0.13 0.79 7.64 -2.91 -0.02 0.77 16 40 H 0.42 -3.56 6.72 -92.71 -0.62 -4.18 16 41 H 0.07 -0.08 8.14 -2.38 -0.02 -0.10 16 42 H 0.10 -0.45 6.33 -2.39 -0.02 -0.47 16 43 H 0.15 -0.98 6.68 -2.91 -0.02 -1.00 16 44 H 0.15 -0.94 8.06 -2.91 -0.02 -0.96 16 45 H 0.14 -0.19 8.06 -2.91 -0.02 -0.21 16 46 H 0.14 -0.40 8.05 -2.91 -0.02 -0.42 16 47 H 0.10 -0.73 7.71 -2.39 -0.02 -0.75 16 48 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 49 H 0.16 -1.77 6.39 -2.91 -0.02 -1.78 16 50 H 0.16 -1.33 6.19 -2.91 -0.02 -1.35 16 51 H 0.14 0.11 6.19 -2.91 -0.02 0.09 16 52 H 0.12 0.61 4.85 -2.91 -0.01 0.59 16 Total: 0.00 -24.66 444.31 0.43 -24.23 By element: Atomic # 1 Polarization: -19.83 SS G_CDS: -0.23 Total: -20.06 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 3.58 Total: 6.31 kcal Atomic # 7 Polarization: 1.51 SS G_CDS: -2.31 Total: -0.80 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -1.97 Total: -9.49 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: 2.05 Total: 0.67 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -0.69 Total: -0.86 kcal Total: -24.66 0.43 -24.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.603 kcal (2) G-P(sol) polarization free energy of solvation -24.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds