Wall clock time and date at job start Sun Mar 7 2021 01:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86296 * 109.47202 * 2 1 4 4 C 1.50692 * 109.47262 * 120.00318 * 2 1 3 5 5 C 1.34713 * 125.66792 * 64.99396 * 4 2 1 6 6 C 1.40967 * 107.03207 * 180.02562 * 5 4 2 7 7 C 1.35936 * 106.73848 * 0.02562 * 6 5 4 8 8 C 1.47816 * 125.92443 * 179.97438 * 7 6 5 9 9 C 1.39176 * 119.99741 * 179.97438 * 8 7 6 10 10 C 1.39464 * 119.75762 * 180.02562 * 9 8 7 11 11 C 1.47570 * 120.12182 * 179.97438 * 10 9 8 12 12 O 1.21586 * 120.00023 * 180.02562 * 11 10 9 13 13 N 1.34771 * 120.00093 * 359.97438 * 11 10 9 14 14 C 1.46493 * 120.00228 * 180.02562 * 13 11 10 15 15 H 1.09000 * 112.85052 * 334.66224 * 14 13 11 16 16 C 1.53782 * 113.61549 * 105.86149 * 14 13 11 17 17 C 1.54057 * 86.98287 * 89.16400 * 16 14 13 18 18 H 1.08992 * 113.61214 * 270.88020 * 17 16 14 19 19 C 1.50697 * 113.69350 * 139.98770 * 17 16 14 20 20 C 1.38217 * 120.00192 * 322.19118 * 19 17 16 21 21 C 1.38262 * 120.02339 * 179.76426 * 20 19 17 22 22 C 1.38189 * 120.00908 * 0.51127 * 21 20 19 23 23 C 1.38344 * 119.99068 * 359.74357 * 22 21 20 24 24 Br 1.89107 * 120.00998 * 179.97438 * 23 22 21 25 25 C 1.38245 * 119.99363 * 142.46285 * 19 17 16 26 26 C 1.53784 * 87.07746 * 25.43429 * 17 16 14 27 27 C 1.40208 * 119.75909 * 0.02562 * 10 9 8 28 28 O 1.35645 * 120.00734 * 180.02562 * 27 10 9 29 29 C 1.38829 * 119.99328 * 0.02562 * 27 10 9 30 30 C 1.37769 * 120.24075 * 359.71289 * 29 27 10 31 31 O 1.34341 * 125.66563 * 245.32978 * 4 2 1 32 32 H 0.96701 * 113.99804 * 299.99991 * 1 2 3 33 33 H 1.09004 * 109.47286 * 240.00231 * 2 1 3 34 34 H 1.48501 * 110.00278 * 300.00271 * 3 2 1 35 35 H 1.48506 * 109.99974 * 61.32080 * 3 2 1 36 36 H 1.07998 * 126.48058 * 0.04728 * 5 4 2 37 37 H 1.08000 * 126.62699 * 180.02562 * 6 5 4 38 38 H 1.07998 * 120.12199 * 0.02838 * 9 8 7 39 39 H 0.97001 * 119.99843 * 0.02562 * 13 11 10 40 40 H 1.08999 * 113.61489 * 203.66439 * 16 14 13 41 41 H 1.08991 * 113.61458 * 334.56889 * 16 14 13 42 42 H 1.08009 * 119.98619 * 0.02562 * 20 19 17 43 43 H 1.08005 * 119.99293 * 180.23187 * 21 20 19 44 44 H 1.08005 * 120.00329 * 179.72327 * 22 21 20 45 45 H 1.08002 * 120.00730 * 359.96286 * 25 19 17 46 46 H 1.08997 * 113.61069 * 220.02518 * 26 17 16 47 47 H 1.08999 * 113.69228 * 89.13122 * 26 17 16 48 48 H 0.96703 * 113.99830 * 90.00488 * 28 27 10 49 49 H 1.07997 * 119.87418 * 179.97438 * 29 27 10 50 50 H 1.07998 * 119.87372 * 180.29582 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2303 5 6 1.7570 -2.0168 1.5093 6 6 2.3813 -2.2611 2.7493 7 6 2.9070 -1.0777 3.1629 8 6 3.6563 -0.8526 4.4170 9 6 4.1423 0.4160 4.7191 10 6 4.8491 0.6226 5.9035 11 6 5.3686 1.9644 6.2315 12 8 5.9848 2.1419 7.2644 13 7 5.1608 2.9928 5.3855 14 6 5.6770 4.3246 5.7108 15 1 5.8051 4.4789 6.7822 16 6 6.9055 4.7293 4.8790 17 6 5.9162 5.3060 3.8484 18 1 5.5976 4.5834 3.0972 19 6 6.3605 6.6155 3.2495 20 6 7.0033 7.5526 4.0362 21 6 7.4156 8.7522 3.4860 22 6 7.1756 9.0191 2.1515 23 6 6.5276 8.0836 1.3648 24 35 6.1983 8.4486 -0.4613 25 6 6.1201 6.8817 1.9143 26 6 4.9214 5.4662 5.0103 27 6 5.0652 -0.4493 6.7810 28 8 5.7515 -0.2539 7.9346 29 6 4.5767 -1.7108 6.4691 30 6 3.8739 -1.9136 5.3016 31 8 2.6220 -0.1449 2.2343 32 1 -0.3933 0.4417 0.7651 33 1 1.7924 -0.5138 -0.8900 34 1 1.5615 2.4679 -1.2084 35 1 1.5879 2.4585 1.2243 36 1 1.2376 -2.7401 0.8982 37 1 2.4321 -3.2059 3.2700 38 1 3.9728 1.2375 4.0388 39 1 4.6695 2.8510 4.5613 40 1 7.5273 5.4856 5.3580 41 1 7.4799 3.8808 4.5075 42 1 7.1874 7.3460 5.0802 43 1 7.9212 9.4825 4.1003 44 1 7.4937 9.9580 1.7228 45 1 5.6145 6.1510 1.3004 46 1 3.8953 5.2122 4.7446 47 1 5.0006 6.4233 5.5258 48 1 5.1951 -0.0081 8.6864 49 1 4.7446 -2.5353 7.1462 50 1 3.4925 -2.8964 5.0671 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:39:11 Heat of formation + Delta-G solvation = 3.905752 kcal Electronic energy + Delta-G solvation = -37342.791505 eV Core-core repulsion = 32316.003071 eV Total energy + Delta-G solvation = -5026.788435 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 470.061 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -43.69326 -41.85456 -41.03022 -39.82221 -38.66117 -38.19150 -37.81359 -34.84488 -34.16327 -33.23247 -32.77183 -32.51823 -31.67158 -30.11843 -30.01889 -26.71523 -26.55831 -26.38569 -25.16530 -23.65873 -23.50267 -23.02295 -22.46732 -21.85576 -21.21661 -20.17275 -19.53882 -19.17902 -18.46098 -18.04600 -17.64783 -17.46675 -17.13410 -16.76408 -16.63265 -16.38020 -16.25195 -16.09979 -15.86657 -15.78970 -15.45496 -15.12523 -14.93548 -14.58016 -14.47094 -14.42423 -14.35295 -14.20844 -13.94791 -13.79066 -13.61506 -13.46493 -13.38421 -13.19410 -13.11223 -12.90902 -12.87397 -12.33409 -12.13948 -12.02053 -11.93777 -11.86603 -11.54874 -11.35979 -11.16344 -11.05996 -10.92814 -10.78983 -10.47927 -10.31565 -10.06429 -9.84691 -9.60659 -8.90180 -4.96873 -0.55590 -0.20710 0.09948 0.28389 0.64214 0.77544 1.15572 1.47053 1.49398 1.70375 1.86293 1.92153 1.98425 2.57502 2.63071 3.11769 3.21758 3.30567 3.41654 3.49591 3.59744 3.65435 3.70567 3.87595 3.90169 3.95305 4.02428 4.06349 4.10082 4.12222 4.21589 4.29440 4.35842 4.42087 4.45437 4.60934 4.64489 4.66585 4.69340 4.75947 4.79554 4.83680 4.89680 4.93730 4.97363 5.01241 5.03125 5.11513 5.15687 5.21389 5.22474 5.36875 5.44957 5.46734 5.51409 5.62418 5.84340 5.98819 6.34708 6.40514 6.73367 7.11397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.038 4.038 3 Si 0.765 3.235 4 C -0.053 4.053 5 C -0.181 4.181 6 C -0.190 4.190 7 C 0.024 3.976 8 C -0.041 4.041 9 C -0.051 4.051 10 C -0.179 4.179 11 C 0.560 3.440 12 O -0.556 6.556 13 N -0.700 5.700 14 C 0.116 3.884 15 H 0.091 0.909 16 C -0.141 4.141 17 C -0.068 4.068 18 H 0.111 0.889 19 C -0.066 4.066 20 C -0.105 4.105 21 C -0.114 4.114 22 C -0.108 4.108 23 C -0.102 4.102 24 Br -0.061 7.061 25 C -0.098 4.098 26 C -0.124 4.124 27 C 0.165 3.835 28 O -0.495 6.495 29 C -0.147 4.147 30 C -0.045 4.045 31 O -0.172 6.172 32 H 0.390 0.610 33 H 0.151 0.849 34 H -0.287 1.287 35 H -0.281 1.281 36 H 0.161 0.839 37 H 0.174 0.826 38 H 0.149 0.851 39 H 0.411 0.589 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.147 0.853 43 H 0.150 0.850 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.411 0.589 49 H 0.163 0.837 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 -1.912 0.282 2.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.147 4.147 3 Si 0.668 3.332 4 C -0.103 4.103 5 C -0.201 4.201 6 C -0.209 4.209 7 C -0.025 4.025 8 C -0.042 4.042 9 C -0.069 4.069 10 C -0.183 4.183 11 C 0.349 3.651 12 O -0.435 6.435 13 N -0.352 5.352 14 C 0.011 3.989 15 H 0.109 0.891 16 C -0.179 4.179 17 C -0.086 4.086 18 H 0.129 0.871 19 C -0.067 4.067 20 C -0.123 4.123 21 C -0.132 4.132 22 C -0.128 4.128 23 C -0.182 4.182 24 Br 0.024 6.976 25 C -0.117 4.117 26 C -0.162 4.162 27 C 0.118 3.882 28 O -0.308 6.308 29 C -0.165 4.165 30 C -0.063 4.063 31 O -0.070 6.070 32 H 0.240 0.760 33 H 0.169 0.831 34 H -0.213 1.213 35 H -0.207 1.207 36 H 0.179 0.821 37 H 0.191 0.809 38 H 0.166 0.834 39 H 0.248 0.752 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.164 0.836 43 H 0.168 0.832 44 H 0.155 0.845 45 H 0.158 0.842 46 H 0.104 0.896 47 H 0.125 0.875 48 H 0.271 0.729 49 H 0.181 0.819 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.876 -0.928 -0.529 1.382 hybrid contribution -1.567 -0.216 0.666 1.717 sum -2.443 -1.144 0.137 2.701 Atomic orbital electron populations 1.86646 1.17350 1.80432 1.50025 1.24523 0.83509 1.12527 0.94150 0.93738 0.90332 0.71661 0.77437 1.23017 1.01144 0.93986 0.92160 1.21801 1.03941 0.95987 0.98334 1.22155 1.02118 0.99123 0.97493 1.20427 1.03460 0.87685 0.90957 1.17693 1.00422 0.94523 0.91530 1.21399 0.93691 0.97265 0.94584 1.20245 1.05688 0.93730 0.98629 1.18226 0.79076 0.84557 0.83276 1.90811 1.41600 1.84604 1.26513 1.45532 1.57289 1.08166 1.24244 1.21869 0.95445 0.81579 1.00012 0.89110 1.23607 0.96505 1.01186 0.96602 1.21672 0.97124 0.93497 0.96321 0.87105 1.19817 0.97939 0.96281 0.92664 1.21439 0.96714 0.93070 1.01066 1.21457 0.99427 0.97915 0.94432 1.21343 0.97887 0.99023 0.94521 1.21958 1.06135 0.98746 0.91328 1.96759 1.95195 1.95514 1.10101 1.21200 0.99451 0.95528 0.95571 1.23390 0.98900 0.98521 0.95416 1.18887 0.89742 0.91731 0.87841 1.84706 1.36392 1.91115 1.18605 1.21577 0.98807 0.96981 0.99152 1.21416 0.94477 0.99202 0.91186 1.83902 1.58312 1.38114 1.26676 0.76047 0.83111 1.21335 1.20716 0.82112 0.80856 0.83354 0.75159 0.87952 0.91484 0.83579 0.83197 0.84547 0.84245 0.89645 0.87534 0.72866 0.81897 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.22 12.88 -148.98 -1.92 -1.69 16 2 C -0.04 0.12 2.98 71.23 0.21 0.33 16 3 Si 0.77 -2.67 32.11 68.60 2.20 -0.46 16 4 C -0.05 0.05 6.20 24.87 0.15 0.21 16 5 C -0.18 0.16 10.78 22.13 0.24 0.40 16 6 C -0.19 0.39 10.26 22.40 0.23 0.62 16 7 C 0.02 -0.02 7.03 24.27 0.17 0.15 16 8 C -0.04 0.08 5.87 -20.13 -0.12 -0.04 16 9 C -0.05 0.08 9.20 22.79 0.21 0.29 16 10 C -0.18 -0.37 5.88 -20.04 -0.12 -0.48 16 11 C 0.56 2.75 7.76 86.71 0.67 3.42 16 12 O -0.56 -6.91 14.76 17.00 0.25 -6.66 16 13 N -0.70 1.00 5.21 -443.18 -2.31 -1.31 16 14 C 0.12 -0.25 4.29 45.52 0.20 -0.05 16 15 H 0.09 0.15 7.50 -2.39 -0.02 0.14 16 16 C -0.14 0.45 7.27 31.22 0.23 0.68 16 17 C -0.07 0.36 3.87 -10.92 -0.04 0.32 16 18 H 0.11 -0.82 8.09 -2.39 -0.02 -0.84 16 19 C -0.07 0.16 5.29 -19.87 -0.11 0.05 16 20 C -0.10 0.32 8.60 22.27 0.19 0.51 16 21 C -0.11 0.25 10.05 22.26 0.22 0.48 16 22 C -0.11 -0.05 9.79 22.28 0.22 0.17 16 23 C -0.10 -0.20 6.22 22.31 0.14 -0.06 16 24 Br -0.06 -0.18 33.70 -20.37 -0.69 -0.86 16 25 C -0.10 0.02 9.45 22.29 0.21 0.23 16 26 C -0.12 0.75 7.28 31.12 0.23 0.97 16 27 C 0.16 0.35 6.72 22.89 0.15 0.50 16 28 O -0.49 -2.16 11.55 -68.60 -0.79 -2.96 16 29 C -0.15 0.43 9.96 22.30 0.22 0.65 16 30 C -0.04 0.20 9.54 22.55 0.22 0.42 16 31 O -0.17 0.04 8.80 -6.51 -0.06 -0.02 16 32 H 0.39 -2.19 8.70 -74.06 -0.64 -2.83 16 33 H 0.15 -0.93 7.96 -2.38 -0.02 -0.95 16 34 H -0.29 -0.85 7.11 99.48 0.71 -0.14 16 35 H -0.28 -0.27 7.11 99.48 0.71 0.44 16 36 H 0.16 -0.46 8.06 -2.91 -0.02 -0.48 16 37 H 0.17 -1.21 7.25 -2.91 -0.02 -1.23 16 38 H 0.15 -0.83 6.24 -2.91 -0.02 -0.85 16 39 H 0.41 -2.60 6.73 -92.71 -0.62 -3.22 16 40 H 0.10 -0.45 6.34 -2.39 -0.02 -0.46 16 41 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.15 -0.98 6.68 -2.91 -0.02 -1.00 16 43 H 0.15 -0.95 8.06 -2.91 -0.02 -0.97 16 44 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 45 H 0.14 -0.36 8.05 -2.91 -0.02 -0.38 16 46 H 0.08 -0.60 8.14 -2.39 -0.02 -0.61 16 47 H 0.11 -0.72 7.72 -2.39 -0.02 -0.74 16 48 H 0.41 -1.15 9.06 -74.05 -0.67 -1.82 16 49 H 0.16 -1.12 8.06 -2.91 -0.02 -1.15 16 50 H 0.16 -1.61 6.96 -2.91 -0.02 -1.63 16 Total: 0.00 -22.77 443.33 -0.43 -23.20 By element: Atomic # 1 Polarization: -18.15 SS G_CDS: -0.85 Total: -19.00 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 3.73 Total: 9.77 kcal Atomic # 7 Polarization: 1.00 SS G_CDS: -2.31 Total: -1.31 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -2.52 Total: -11.33 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.20 Total: -0.46 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -0.69 Total: -0.86 kcal Total: -22.77 -0.43 -23.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.110 kcal (2) G-P(sol) polarization free energy of solvation -22.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds