Wall clock time and date at job start Sun Mar 7 2021 01:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86301 * 109.46839 * 2 1 4 4 C 1.50698 * 109.46909 * 119.99861 * 2 1 3 5 5 C 1.38554 * 120.32587 * 244.99581 * 4 2 1 6 6 N 1.31523 * 120.90390 * 179.97438 * 5 4 2 7 7 C 1.32718 * 121.64307 * 0.02562 * 6 5 4 8 8 C 1.48165 * 119.71923 * 179.97438 * 7 6 5 9 9 O 1.21521 * 119.99645 * 179.97438 * 8 7 6 10 10 N 1.34776 * 120.00341 * 359.97438 * 8 7 6 11 11 C 1.46498 * 119.99896 * 180.02562 * 10 8 7 12 12 H 1.09006 * 112.85119 * 336.19757 * 11 10 8 13 13 C 1.53959 * 113.61488 * 107.46654 * 11 10 8 14 14 C 1.53784 * 87.01775 * 89.19986 * 13 11 10 15 15 H 1.09002 * 113.61172 * 270.77435 * 14 13 11 16 16 C 1.50695 * 113.61605 * 139.95445 * 14 13 11 17 17 C 1.38220 * 119.99336 * 321.14002 * 16 14 13 18 18 C 1.38264 * 120.02013 * 180.27962 * 17 16 14 19 19 C 1.38202 * 120.00926 * 359.43987 * 18 17 16 20 20 C 1.38345 * 119.98814 * 0.28217 * 19 18 17 21 21 Br 1.89099 * 120.01241 * 179.97438 * 20 19 18 22 22 C 1.38236 * 119.99792 * 140.86397 * 16 14 13 23 23 C 1.53779 * 113.61312 * 205.00161 * 11 10 8 24 24 C 1.39305 * 120.55372 * 0.25192 * 7 6 5 25 25 C 1.38596 * 119.05751 * 359.49865 * 24 7 6 26 26 H 0.96704 * 114.00201 * 299.99871 * 1 2 3 27 27 H 1.09001 * 109.46810 * 240.00013 * 2 1 3 28 28 H 1.48493 * 110.00054 * 299.99719 * 3 2 1 29 29 H 1.48502 * 109.99950 * 61.32036 * 3 2 1 30 30 H 1.08005 * 119.54507 * 359.96424 * 5 4 2 31 31 H 0.96999 * 119.99946 * 0.02562 * 10 8 7 32 32 H 1.08993 * 113.66437 * 334.67575 * 13 11 10 33 33 H 1.08998 * 113.61580 * 203.71605 * 13 11 10 34 34 H 1.07997 * 119.99201 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.99912 * 179.72620 * 18 17 16 36 36 H 1.08000 * 120.00653 * 180.30239 * 19 18 17 37 37 H 1.08002 * 120.00457 * 359.97438 * 22 16 14 38 38 H 1.09005 * 113.61367 * 156.25220 * 23 11 10 39 39 H 1.09001 * 113.61771 * 25.34948 * 23 11 10 40 40 H 1.08002 * 120.47149 * 179.72426 * 24 7 6 41 41 H 1.07998 * 120.75247 * 180.23580 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6411 -0.0172 2.1977 6 7 3.0843 -0.6257 3.2762 7 6 2.8727 -1.9196 3.4822 8 6 3.3918 -2.5621 4.7123 9 8 3.2006 -3.7464 4.9063 10 7 4.0761 -1.8331 5.6160 11 6 4.5898 -2.4686 6.8319 12 1 4.0392 -3.3691 7.1040 13 6 6.1181 -2.6550 6.8319 14 6 6.2083 -1.2555 7.4629 15 1 6.2701 -0.4499 6.7312 16 6 7.2534 -1.1465 8.5430 17 6 7.4452 -2.1917 9.4269 18 6 8.4000 -2.0900 10.4218 19 6 9.1709 -0.9477 10.5257 20 6 8.9833 0.0964 9.6377 21 35 10.0373 1.6599 9.7796 22 6 8.0240 -0.0035 8.6463 23 6 4.7873 -1.4903 8.0019 24 6 2.1716 -2.6800 2.5490 25 6 1.6881 -2.0639 1.4055 26 1 -0.3934 0.4417 0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5615 2.4679 -1.2085 29 1 1.5878 2.4586 1.2243 30 1 2.8332 1.0371 2.0641 31 1 4.2284 -0.8877 5.4614 32 1 6.5518 -2.7126 5.8336 33 1 6.4606 -3.4535 7.4900 34 1 6.8457 -3.0862 9.3435 35 1 8.5465 -2.9051 11.1150 36 1 9.9201 -0.8703 11.2998 37 1 7.8775 0.8112 7.9526 38 1 4.7653 -1.9699 8.9805 39 1 4.1482 -0.6090 7.9469 40 1 2.0040 -3.7338 2.7159 41 1 1.1377 -2.6263 0.6658 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:39:22 Heat of formation + Delta-G solvation = 34.179818 kcal Electronic energy + Delta-G solvation = -25878.912356 eV Core-core repulsion = 21965.591217 eV Total energy + Delta-G solvation = -3913.321139 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.041 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.01914 -41.30544 -40.17995 -38.83830 -37.99159 -34.90132 -33.73589 -33.13632 -32.95161 -31.96285 -30.11571 -28.01680 -26.70583 -26.18839 -25.04587 -24.02872 -23.49555 -22.55149 -21.98429 -20.09681 -19.34445 -18.70233 -18.03879 -17.75845 -16.97596 -16.66801 -16.53132 -16.39380 -16.26827 -16.09540 -15.97741 -15.32778 -15.13553 -14.77666 -14.55711 -14.41025 -14.39344 -14.34476 -14.17351 -13.49721 -13.47725 -13.39824 -12.90320 -12.63399 -12.33323 -12.13990 -12.02052 -11.92324 -11.54775 -11.47733 -11.34097 -11.16332 -11.07977 -10.69166 -10.67212 -10.40366 -10.09432 -9.84061 -9.59989 -4.92197 -0.61122 0.07513 0.10634 0.29073 0.64780 1.24417 1.51326 1.59105 1.90296 1.97069 2.58270 2.64612 2.92449 3.33840 3.43467 3.49869 3.60150 3.63823 3.70666 3.77996 3.88678 3.92232 3.95908 4.10849 4.12368 4.13126 4.30302 4.42682 4.47533 4.59065 4.61211 4.67713 4.76683 4.80133 4.90400 4.94417 4.97783 4.99450 5.01768 5.12746 5.23128 5.36870 5.37982 5.45666 5.61887 5.85201 6.25621 6.42231 6.60208 7.02373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.078 4.078 3 Si 0.765 3.235 4 C -0.139 4.139 5 C 0.099 3.901 6 N -0.459 5.459 7 C 0.064 3.936 8 C 0.572 3.428 9 O -0.565 6.565 10 N -0.683 5.683 11 C 0.111 3.889 12 H 0.094 0.906 13 C -0.138 4.138 14 C -0.067 4.067 15 H 0.107 0.893 16 C -0.066 4.066 17 C -0.104 4.104 18 C -0.113 4.113 19 C -0.108 4.108 20 C -0.102 4.102 21 Br -0.061 7.061 22 C -0.098 4.098 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.052 4.052 26 H 0.388 0.612 27 H 0.137 0.863 28 H -0.300 1.300 29 H -0.273 1.273 30 H 0.185 0.815 31 H 0.420 0.580 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 1.262 -0.868 1.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.187 4.187 3 Si 0.670 3.330 4 C -0.141 4.141 5 C -0.060 4.060 6 N -0.170 5.170 7 C -0.074 4.074 8 C 0.358 3.642 9 O -0.443 6.443 10 N -0.333 5.333 11 C 0.006 3.994 12 H 0.113 0.887 13 C -0.177 4.177 14 C -0.085 4.085 15 H 0.125 0.875 16 C -0.067 4.067 17 C -0.122 4.122 18 C -0.132 4.132 19 C -0.128 4.128 20 C -0.182 4.182 21 Br 0.024 6.976 22 C -0.118 4.118 23 C -0.162 4.162 24 C -0.137 4.137 25 C -0.078 4.078 26 H 0.238 0.762 27 H 0.154 0.846 28 H -0.228 1.228 29 H -0.199 1.199 30 H 0.202 0.798 31 H 0.258 0.742 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.166 0.834 35 H 0.169 0.831 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.167 0.833 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.206 1.980 -0.525 2.378 hybrid contribution -1.590 -0.492 -0.216 1.678 sum -0.384 1.488 -0.741 1.706 Atomic orbital electron populations 1.86621 1.17962 1.80362 1.50259 1.25209 0.83713 1.12003 0.97820 0.94071 0.90103 0.71696 0.77157 1.21670 0.98794 0.95498 0.98178 1.23046 0.93705 1.00914 0.88353 1.67514 1.18560 1.08983 1.21991 1.21073 0.99649 0.90887 0.95749 1.18076 0.77747 0.85612 0.82811 1.90793 1.59662 1.16291 1.77556 1.45470 1.53912 1.13976 1.19959 1.22016 0.95187 0.97575 0.84663 0.88741 1.23587 0.95065 0.97138 1.01879 1.21595 0.92733 0.98759 0.95447 0.87495 1.19821 0.96600 0.93351 0.96948 1.21442 0.97778 0.99035 0.93968 1.21469 0.95228 0.97709 0.98767 1.21352 1.00199 0.92823 0.98394 1.21956 1.00373 0.94321 1.01524 1.96755 1.68919 1.33739 1.98190 1.21180 0.94453 0.98888 0.97259 1.23393 0.95129 0.99654 0.97984 1.22291 0.95610 1.02312 0.93444 1.21751 0.95451 0.94137 0.96454 0.76226 0.84559 1.22828 1.19949 0.79838 0.74245 0.91382 0.87638 0.83416 0.83084 0.84499 0.84524 0.87329 0.89736 0.83312 0.82095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.14 12.84 -148.98 -1.91 -0.78 16 2 C -0.08 0.44 2.82 71.24 0.20 0.64 16 3 Si 0.77 -4.98 29.91 68.60 2.05 -2.93 16 4 C -0.14 0.55 5.36 -19.70 -0.11 0.44 16 5 C 0.10 -0.33 9.84 84.81 0.83 0.50 16 6 N -0.46 -0.24 9.54 -184.92 -1.76 -2.01 16 7 C 0.06 0.20 6.75 41.91 0.28 0.49 16 8 C 0.57 3.25 7.81 86.88 0.68 3.92 16 9 O -0.56 -6.85 15.92 -3.78 -0.06 -6.92 16 10 N -0.68 -0.13 5.25 -442.31 -2.32 -2.45 16 11 C 0.11 -0.18 4.33 45.58 0.20 0.02 16 12 H 0.09 0.15 7.46 -2.38 -0.02 0.13 16 13 C -0.14 0.45 7.27 31.18 0.23 0.68 16 14 C -0.07 0.31 3.85 -11.01 -0.04 0.27 16 15 H 0.11 -0.61 8.09 -2.39 -0.02 -0.63 16 16 C -0.07 0.14 5.29 -19.87 -0.11 0.03 16 17 C -0.10 0.33 8.55 22.27 0.19 0.52 16 18 C -0.11 0.26 10.05 22.27 0.22 0.49 16 19 C -0.11 -0.05 9.79 22.29 0.22 0.17 16 20 C -0.10 -0.23 6.22 22.31 0.14 -0.09 16 21 Br -0.06 -0.20 33.70 -20.37 -0.69 -0.88 16 22 C -0.10 -0.04 9.45 22.29 0.21 0.17 16 23 C -0.12 0.67 7.29 31.12 0.23 0.89 16 24 C -0.12 -0.17 9.63 22.61 0.22 0.05 16 25 C -0.05 0.12 9.83 22.45 0.22 0.34 16 26 H 0.39 -2.90 8.70 -74.05 -0.64 -3.54 16 27 H 0.14 -1.06 7.96 -2.39 -0.02 -1.08 16 28 H -0.30 -0.59 7.11 99.48 0.71 0.12 16 29 H -0.27 0.92 7.01 99.48 0.70 1.61 16 30 H 0.19 -1.50 4.86 -2.91 -0.01 -1.52 16 31 H 0.42 -1.21 8.03 -92.71 -0.74 -1.95 16 32 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.11 -0.52 6.38 -2.39 -0.02 -0.54 16 34 H 0.15 -1.05 6.72 -2.91 -0.02 -1.07 16 35 H 0.15 -1.00 8.06 -2.91 -0.02 -1.02 16 36 H 0.14 -0.18 8.06 -2.91 -0.02 -0.21 16 37 H 0.14 -0.20 8.05 -2.91 -0.02 -0.22 16 38 H 0.11 -0.72 7.66 -2.38 -0.02 -0.74 16 39 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.15 0.24 7.64 -2.91 -0.02 0.22 16 41 H 0.16 -0.87 8.06 -2.91 -0.02 -0.89 16 Total: 0.00 -17.20 367.44 -1.14 -18.35 By element: Atomic # 1 Polarization: -11.66 SS G_CDS: -0.26 Total: -11.92 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 3.81 Total: 9.54 kcal Atomic # 7 Polarization: -0.37 SS G_CDS: -4.09 Total: -4.46 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -1.97 Total: -7.69 kcal Atomic # 14 Polarization: -4.98 SS G_CDS: 2.05 Total: -2.93 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -0.69 Total: -0.88 kcal Total: -17.20 -1.14 -18.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.526 kcal (2) G-P(sol) polarization free energy of solvation -17.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds