Wall clock time and date at job start Sun Mar 7 2021 01:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.47251 * 2 1 4 4 C 1.50700 * 109.46928 * 119.99907 * 2 1 3 5 5 C 1.34848 * 125.89953 * 218.29398 * 4 2 1 6 6 C 1.40945 * 107.47144 * 180.23316 * 5 4 2 7 7 C 1.34852 * 107.46242 * 359.76276 * 6 5 4 8 8 N 1.36564 * 125.90205 * 38.11481 * 4 2 1 9 9 C 1.40206 * 125.66718 * 0.02562 * 8 4 2 10 10 C 1.38831 * 120.06225 * 235.78563 * 9 8 4 11 11 C 1.38125 * 119.92904 * 180.02562 * 10 9 8 12 12 C 1.38269 * 120.06605 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.93517 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47423 * 90.00021 * 13 12 11 15 15 O 1.21288 * 119.99608 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00452 * 180.27620 * 14 13 12 17 17 C 1.46497 * 120.00118 * 179.72514 * 16 14 13 18 18 H 1.08999 * 112.84854 * 23.80309 * 17 16 14 19 19 C 1.53779 * 113.61271 * 155.00032 * 17 16 14 20 20 C 1.53790 * 87.08107 * 89.11920 * 19 17 16 21 21 H 1.09001 * 113.60682 * 270.88629 * 20 19 17 22 22 C 1.50698 * 113.61381 * 140.06324 * 20 19 17 23 23 C 1.38219 * 119.99153 * 120.00389 * 22 20 19 24 24 C 1.38262 * 120.02233 * 179.97438 * 23 22 20 25 25 C 1.38201 * 120.00311 * 359.97438 * 24 23 22 26 26 C 1.38339 * 119.99463 * 0.02562 * 25 24 23 27 27 Br 1.89099 * 120.01263 * 180.02562 * 26 25 24 28 28 C 1.38231 * 119.99596 * 299.72245 * 22 20 19 29 29 C 1.53776 * 113.61404 * 252.49942 * 17 16 14 30 30 C 1.38281 * 120.13459 * 0.23745 * 12 11 10 31 31 C 1.38118 * 120.06326 * 359.48720 * 30 12 11 32 32 H 0.96699 * 113.99748 * 59.99939 * 1 2 3 33 33 H 1.08996 * 109.46812 * 239.99585 * 2 1 3 34 34 H 1.48498 * 109.99857 * 60.00072 * 3 2 1 35 35 H 1.48499 * 109.99738 * 181.32140 * 3 2 1 36 36 H 1.08003 * 126.26657 * 359.97438 * 5 4 2 37 37 H 1.07997 * 126.26941 * 179.72174 * 6 5 4 38 38 H 1.07998 * 125.89762 * 180.02562 * 7 6 5 39 39 H 1.07999 * 120.03612 * 0.04222 * 10 9 8 40 40 H 1.07997 * 119.96418 * 180.02562 * 11 10 9 41 41 H 1.09001 * 109.46888 * 330.00278 * 13 12 11 42 42 H 1.09000 * 109.47496 * 210.00034 * 13 12 11 43 43 H 0.96999 * 119.99709 * 359.73131 * 16 14 13 44 44 H 1.09003 * 113.61582 * 203.66327 * 19 17 16 45 45 H 1.08993 * 113.61844 * 334.48476 * 19 17 16 46 46 H 1.08001 * 119.98925 * 359.96972 * 23 22 20 47 47 H 1.08000 * 119.99946 * 180.02562 * 24 23 22 48 48 H 1.08002 * 119.99745 * 180.02562 * 25 24 23 49 49 H 1.08004 * 120.00685 * 0.02562 * 28 22 20 50 50 H 1.09002 * 113.61930 * 25.43354 * 29 17 16 51 51 H 1.09008 * 113.61719 * 156.33577 * 29 17 16 52 52 H 1.07999 * 119.96611 * 179.74532 * 30 12 11 53 53 H 1.08000 * 120.03648 * 180.25541 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 3.0031 -0.3540 1.9671 6 6 3.1223 -1.2849 3.0187 7 6 2.1157 -2.1729 2.8891 8 7 1.3776 -1.8243 1.7942 9 6 0.2435 -2.5010 1.3236 10 6 -0.8425 -2.7061 2.1637 11 6 -1.9582 -3.3737 1.6974 12 6 -1.9939 -3.8378 0.3954 13 6 -3.2124 -4.5663 -0.1102 14 6 -4.1802 -3.5751 -0.7033 15 8 -3.9070 -2.3934 -0.7149 16 7 -5.3514 -4.0010 -1.2165 17 6 -6.2948 -3.0366 -1.7876 18 1 -5.8119 -2.1172 -2.1185 19 6 -7.2410 -3.6469 -2.8350 20 6 -8.1934 -3.9699 -1.6714 21 1 -8.0104 -4.9426 -1.2147 22 6 -9.6464 -3.7412 -1.9993 23 6 -10.5430 -4.7911 -1.9338 24 6 -11.8763 -4.5819 -2.2340 25 6 -12.3131 -3.3226 -2.5991 26 6 -11.4161 -2.2715 -2.6648 27 35 -12.0134 -0.5481 -3.1637 28 6 -10.0833 -2.4803 -2.3598 29 6 -7.5392 -2.8015 -0.9153 30 6 -0.9115 -3.6398 -0.4421 31 6 0.2047 -2.9680 0.0168 32 1 -0.3933 0.4417 -0.7651 33 1 1.7923 -0.5139 -0.8899 34 1 1.5616 2.4678 1.2085 35 1 3.5346 1.7702 -0.0322 36 1 3.6539 0.4879 1.7824 37 1 3.8812 -1.2871 3.7871 38 1 1.9258 -3.0142 3.5391 39 1 -0.8151 -2.3439 3.1808 40 1 -2.8035 -3.5332 2.3503 41 1 -3.6910 -5.0911 0.7166 42 1 -2.9152 -5.2853 -0.8736 43 1 -5.5697 -4.9460 -1.2075 44 1 -7.6428 -2.9174 -3.5383 45 1 -6.8357 -4.5307 -3.3274 46 1 -10.2019 -5.7752 -1.6482 47 1 -12.5766 -5.4024 -2.1823 48 1 -13.3547 -3.1592 -2.8332 49 1 -9.3834 -1.6591 -2.4070 50 1 -7.3750 -3.0037 0.1432 51 1 -8.0224 -1.8408 -1.0937 52 1 -0.9406 -4.0071 -1.4573 53 1 1.0481 -2.8100 -0.6390 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_13287746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:39:36 Heat of formation + Delta-G solvation = 81.419491 kcal Electronic energy + Delta-G solvation = -36286.573815 eV Core-core repulsion = 31524.009864 eV Total energy + Delta-G solvation = -4762.563952 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 467.088 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.77905 -41.61567 -40.65836 -39.73300 -38.69158 -37.68031 -34.89888 -34.57501 -33.31029 -32.19018 -32.13090 -31.46331 -31.24326 -30.23474 -28.00532 -26.68731 -26.11136 -26.02177 -23.97817 -23.80177 -23.28401 -22.41723 -21.68170 -21.57776 -20.58262 -20.09908 -18.82480 -18.37817 -18.35140 -17.77594 -17.26570 -17.02404 -16.65340 -16.24793 -16.20815 -16.01886 -15.83177 -15.73026 -15.46525 -15.12972 -15.09059 -14.78828 -14.64448 -14.55032 -14.49008 -14.45779 -14.24261 -14.19804 -13.57680 -13.49589 -13.42715 -13.33158 -13.27825 -12.96272 -12.85892 -12.78814 -12.58046 -12.34486 -12.11447 -12.04531 -11.99077 -11.86805 -11.52227 -11.31661 -11.17062 -10.96954 -10.56787 -10.33549 -10.04023 -9.99682 -9.82318 -9.60849 -9.30658 -9.19092 -5.02256 -0.00218 0.11580 0.27815 0.34307 0.64357 0.94465 1.29926 1.62392 1.67601 1.78051 1.87959 2.03661 2.14998 2.58771 2.71500 3.28132 3.47331 3.62793 3.65748 3.70955 3.72075 3.76088 3.85201 3.87584 3.97023 4.04539 4.07118 4.07955 4.18116 4.24849 4.30794 4.31533 4.32167 4.34764 4.43189 4.45158 4.59064 4.60643 4.62242 4.72834 4.77172 4.80317 4.89651 4.95732 4.96466 5.01527 5.03280 5.04420 5.06016 5.16464 5.20378 5.24058 5.30374 5.38287 5.49724 5.53024 5.67425 5.75703 5.79610 5.86058 6.03300 6.40594 6.60732 6.77128 7.33072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.059 4.059 3 Si 0.811 3.189 4 C 0.018 3.982 5 C -0.226 4.226 6 C -0.201 4.201 7 C -0.014 4.014 8 N -0.394 5.394 9 C 0.118 3.882 10 C -0.127 4.127 11 C -0.096 4.096 12 C -0.065 4.065 13 C -0.097 4.097 14 C 0.515 3.485 15 O -0.575 6.575 16 N -0.701 5.701 17 C 0.119 3.881 18 H 0.080 0.920 19 C -0.126 4.126 20 C -0.062 4.062 21 H 0.123 0.877 22 C -0.068 4.068 23 C -0.102 4.102 24 C -0.115 4.115 25 C -0.109 4.109 26 C -0.103 4.103 27 Br -0.064 7.064 28 C -0.099 4.099 29 C -0.146 4.146 30 C -0.092 4.092 31 C -0.107 4.107 32 H 0.400 0.600 33 H 0.090 0.910 34 H -0.309 1.309 35 H -0.281 1.281 36 H 0.139 0.861 37 H 0.158 0.842 38 H 0.186 0.814 39 H 0.121 0.879 40 H 0.143 0.857 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.419 0.581 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.136 0.864 49 H 0.133 0.867 50 H 0.070 0.930 51 H 0.086 0.914 52 H 0.148 0.852 53 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 -8.483 -4.037 9.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.168 4.168 3 Si 0.715 3.285 4 C -0.092 4.092 5 C -0.251 4.251 6 C -0.225 4.225 7 C -0.142 4.142 8 N -0.066 5.066 9 C 0.029 3.971 10 C -0.146 4.146 11 C -0.114 4.114 12 C -0.066 4.066 13 C -0.136 4.136 14 C 0.302 3.698 15 O -0.453 6.453 16 N -0.353 5.353 17 C 0.013 3.987 18 H 0.098 0.902 19 C -0.164 4.164 20 C -0.080 4.080 21 H 0.141 0.859 22 C -0.069 4.069 23 C -0.120 4.120 24 C -0.133 4.133 25 C -0.129 4.129 26 C -0.183 4.183 27 Br 0.021 6.979 28 C -0.119 4.119 29 C -0.185 4.185 30 C -0.110 4.110 31 C -0.126 4.126 32 H 0.251 0.749 33 H 0.107 0.893 34 H -0.237 1.237 35 H -0.208 1.208 36 H 0.157 0.843 37 H 0.176 0.824 38 H 0.203 0.797 39 H 0.139 0.861 40 H 0.161 0.839 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.256 0.744 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.171 0.829 47 H 0.169 0.831 48 H 0.154 0.846 49 H 0.151 0.849 50 H 0.089 0.911 51 H 0.104 0.896 52 H 0.166 0.834 53 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.072 -6.893 -3.395 8.275 hybrid contribution 0.157 -0.604 0.707 0.943 sum -2.914 -7.496 -2.688 8.480 Atomic orbital electron populations 1.86514 1.16897 1.82347 1.51027 1.24661 0.86081 1.11100 0.94931 0.94534 0.77089 0.72709 0.84188 1.20516 0.97617 0.91291 0.99810 1.20844 1.01105 1.03661 0.99442 1.21159 1.02002 0.97422 1.01905 1.22409 0.95258 1.03745 0.92799 1.41631 1.21208 1.21199 1.22601 1.17784 0.86549 0.97901 0.94869 1.21093 0.92719 1.00753 1.00048 1.21059 0.97198 0.96965 0.96178 1.19588 0.95179 0.98382 0.93416 1.20764 0.91721 0.96918 1.04193 1.20994 0.82198 0.89430 0.77139 1.90770 1.77010 1.19822 1.57701 1.45553 1.17429 1.11388 1.60968 1.21734 0.88841 0.93322 0.94818 0.90164 1.23356 0.94828 1.02285 0.95890 1.21635 0.88605 1.00325 0.97433 0.85858 1.19879 0.96232 0.92396 0.98425 1.21551 0.92809 0.99886 0.97716 1.21497 0.96879 0.96714 0.98230 1.21351 0.99800 0.92461 0.99303 1.21942 0.96732 0.91842 1.07742 1.96760 1.89763 1.20102 1.91232 1.21088 0.93578 0.98337 0.98892 1.23549 0.96183 0.99022 0.99737 1.21084 0.91964 0.97727 1.00225 1.20968 0.99634 0.98135 0.93835 0.74901 0.89273 1.23718 1.20761 0.84349 0.82418 0.79688 0.86073 0.83931 0.84895 0.84583 0.74373 0.89004 0.88792 0.82889 0.83064 0.84630 0.84941 0.91134 0.89575 0.83420 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.21 10.90 -148.98 -1.62 -4.83 16 2 C -0.06 -0.27 2.46 71.24 0.18 -0.10 16 3 Si 0.81 1.66 30.95 68.60 2.12 3.79 16 4 C 0.02 0.20 6.13 41.04 0.25 0.45 16 5 C -0.23 -2.56 9.39 22.15 0.21 -2.35 16 6 C -0.20 -1.86 10.86 22.16 0.24 -1.62 16 7 C -0.01 -0.12 11.21 83.18 0.93 0.81 16 8 N -0.39 -4.14 2.84 -333.41 -0.95 -5.09 16 9 C 0.12 0.99 4.69 38.08 0.18 1.16 16 10 C -0.13 -0.85 9.77 22.38 0.22 -0.63 16 11 C -0.10 -0.24 9.69 22.25 0.22 -0.03 16 12 C -0.07 0.00 4.37 -19.85 -0.09 -0.09 16 13 C -0.10 0.72 5.83 29.10 0.17 0.89 16 14 C 0.51 -0.71 7.82 87.66 0.69 -0.02 16 15 O -0.57 -5.44 15.63 -3.06 -0.05 -5.49 16 16 N -0.70 4.88 5.26 -440.05 -2.32 2.56 16 17 C 0.12 -0.48 4.32 45.52 0.20 -0.28 16 18 H 0.08 0.14 7.46 -2.39 -0.02 0.12 16 19 C -0.13 0.94 7.29 31.12 0.23 1.17 16 20 C -0.06 0.47 3.85 -11.01 -0.04 0.43 16 21 H 0.12 -1.46 8.09 -2.39 -0.02 -1.48 16 22 C -0.07 0.25 5.29 -19.87 -0.11 0.14 16 23 C -0.10 0.50 9.71 22.27 0.22 0.72 16 24 C -0.11 0.40 10.05 22.27 0.22 0.62 16 25 C -0.11 0.01 9.79 22.28 0.22 0.22 16 26 C -0.10 -0.20 6.22 22.31 0.14 -0.06 16 27 Br -0.06 -0.22 33.70 -20.37 -0.69 -0.91 16 28 C -0.10 0.02 8.37 22.28 0.19 0.20 16 29 C -0.15 0.59 7.25 31.12 0.23 0.81 16 30 C -0.09 -0.11 9.69 22.25 0.22 0.11 16 31 C -0.11 -0.55 8.55 22.38 0.19 -0.36 16 32 H 0.40 -1.45 8.74 -74.06 -0.65 -2.10 16 33 H 0.09 0.05 7.96 -2.39 -0.02 0.03 16 34 H -0.31 -3.53 7.11 99.48 0.71 -2.82 16 35 H -0.28 -1.70 6.97 99.48 0.69 -1.00 16 36 H 0.14 1.36 6.50 -2.91 -0.02 1.34 16 37 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 38 H 0.19 0.53 8.06 -2.91 -0.02 0.51 16 39 H 0.12 0.78 8.06 -2.91 -0.02 0.75 16 40 H 0.14 -0.22 8.06 -2.91 -0.02 -0.25 16 41 H 0.13 -1.68 8.08 -2.39 -0.02 -1.70 16 42 H 0.14 -1.79 8.08 -2.39 -0.02 -1.81 16 43 H 0.42 -5.83 8.70 -92.71 -0.81 -6.64 16 44 H 0.09 -0.52 7.73 -2.39 -0.02 -0.54 16 45 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 46 H 0.15 -1.56 8.05 -2.91 -0.02 -1.59 16 47 H 0.15 -1.18 8.06 -2.91 -0.02 -1.21 16 48 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 49 H 0.13 -0.12 6.65 -2.91 -0.02 -0.14 16 50 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 51 H 0.09 -0.19 6.31 -2.38 -0.02 -0.21 16 52 H 0.15 -0.55 8.06 -2.91 -0.02 -0.57 16 53 H 0.12 0.52 8.06 -2.91 -0.02 0.50 16 Total: 0.00 -28.36 459.10 1.12 -27.24 By element: Atomic # 1 Polarization: -19.01 SS G_CDS: -0.47 Total: -19.48 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 5.08 Total: 2.20 kcal Atomic # 7 Polarization: 0.74 SS G_CDS: -3.26 Total: -2.52 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.67 Total: -10.32 kcal Atomic # 14 Polarization: 1.66 SS G_CDS: 2.12 Total: 3.79 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.69 Total: -0.91 kcal Total: -28.36 1.12 -27.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_13287746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.661 kcal (2) G-P(sol) polarization free energy of solvation -28.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds