Wall clock time and date at job start Sun Mar 7 2021 01:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47115 * 2 1 4 4 C 1.50700 * 109.47532 * 120.00474 * 2 1 3 5 5 C 1.38357 * 120.34826 * 64.99504 * 4 2 1 6 6 C 1.40021 * 118.28790 * 180.02562 * 5 4 2 7 7 C 1.47836 * 120.56146 * 179.97438 * 6 5 4 8 8 O 1.21553 * 119.99786 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99999 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99694 * 180.02562 * 9 7 6 11 11 H 1.08994 * 112.85405 * 23.80027 * 10 9 7 12 12 C 1.53778 * 113.61191 * 155.00177 * 10 9 7 13 13 C 1.53780 * 87.08588 * 89.11379 * 12 10 9 14 14 H 1.09001 * 113.61462 * 270.88832 * 13 12 10 15 15 C 1.50696 * 113.61843 * 140.06258 * 13 12 10 16 16 C 1.38222 * 119.99308 * 299.72546 * 15 13 12 17 17 C 1.38265 * 120.01748 * 179.76231 * 16 15 13 18 18 C 1.38192 * 120.01145 * 0.51755 * 17 16 15 19 19 C 1.38348 * 119.98913 * 359.73520 * 18 17 16 20 20 Br 1.89105 * 120.00972 * 180.02562 * 19 18 17 21 21 C 1.38237 * 119.99666 * 120.00200 * 15 13 12 22 22 C 1.53780 * 113.61106 * 252.49541 * 10 9 7 23 23 C 1.39523 * 118.88112 * 0.02562 * 6 5 4 24 24 N 1.31694 * 120.56847 * 0.02562 * 23 6 5 25 25 C 1.31933 * 121.87963 * 359.97438 * 24 23 6 26 26 H 0.96701 * 114.00352 * 59.99532 * 1 2 3 27 27 H 1.09010 * 109.46743 * 240.00117 * 2 1 3 28 28 H 1.48499 * 110.00047 * 298.68432 * 3 2 1 29 29 H 1.48500 * 110.00037 * 60.00411 * 3 2 1 30 30 H 1.07994 * 120.85854 * 0.04271 * 5 4 2 31 31 H 0.96995 * 120.00170 * 0.02562 * 9 7 6 32 32 H 1.09007 * 113.61361 * 203.66393 * 12 10 9 33 33 H 1.08997 * 113.61717 * 334.48322 * 12 10 9 34 34 H 1.07999 * 119.99213 * 0.02562 * 16 15 13 35 35 H 1.08005 * 119.99688 * 180.23066 * 17 16 15 36 36 H 1.08003 * 120.01022 * 179.76764 * 18 17 16 37 37 H 1.08002 * 120.00279 * 359.95693 * 21 15 13 38 38 H 1.09002 * 113.61889 * 25.43415 * 22 10 9 39 39 H 1.09000 * 113.61181 * 156.33606 * 22 10 9 40 40 H 1.07998 * 119.72093 * 180.02562 * 23 6 5 41 41 H 1.08000 * 119.45770 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.6886 -2.0613 1.4057 6 6 2.1748 -2.6778 2.5651 7 6 1.9438 -4.1184 2.8037 8 8 1.3276 -4.7781 1.9896 9 7 2.4163 -4.7002 3.9238 10 6 2.1878 -6.1279 4.1599 11 1 2.0135 -6.6865 3.2404 12 6 3.2328 -6.7742 5.0847 13 6 2.3221 -6.3797 6.2594 14 1 2.5287 -5.3863 6.6576 15 6 2.2311 -7.4333 7.3330 16 6 1.7441 -8.6904 7.0280 17 6 1.6650 -9.6589 8.0116 18 6 2.0628 -9.3672 9.3025 19 6 2.5455 -8.1075 9.6093 20 35 3.0908 -7.7080 11.3754 21 6 2.6294 -7.1406 8.6240 22 6 1.1527 -6.4122 5.2611 23 6 2.8799 -1.9094 3.4919 24 7 3.0845 -0.6258 3.2803 25 6 2.6384 -0.0183 2.1974 26 1 -0.3934 0.4418 -0.7650 27 1 1.7923 -0.5139 -0.8901 28 1 1.5878 2.4586 -1.2242 29 1 1.5615 2.4678 1.2085 30 1 1.1387 -2.6257 0.6673 31 1 2.9076 -4.1737 4.5736 32 1 3.3288 -7.8516 4.9493 33 1 4.1939 -6.2602 5.0840 34 1 1.4292 -8.9175 6.0202 35 1 1.2878 -10.6422 7.7721 36 1 1.9975 -10.1227 10.0716 37 1 3.0064 -6.1572 8.8630 38 1 0.4342 -5.6050 5.4040 39 1 0.6801 -7.3905 5.1740 40 1 3.2613 -2.3712 4.3906 41 1 2.8283 1.0364 2.0638 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14189268_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:39:45 Heat of formation + Delta-G solvation = 32.995568 kcal Electronic energy + Delta-G solvation = -25905.088611 eV Core-core repulsion = 21991.716119 eV Total energy + Delta-G solvation = -3913.372492 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.041 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -42.05838 -41.37922 -40.17127 -38.84980 -38.05978 -34.95178 -33.87249 -33.39047 -32.97126 -31.95322 -30.14653 -27.37182 -26.89472 -26.86384 -25.40006 -23.80490 -23.60349 -22.63986 -21.75725 -20.24128 -19.09286 -18.74402 -18.31518 -17.96768 -17.79296 -17.02480 -16.51766 -16.37878 -16.17308 -16.09281 -15.59940 -15.35696 -15.19244 -14.81497 -14.67625 -14.53424 -14.38811 -14.24755 -14.16195 -13.90355 -13.65241 -13.51315 -13.01315 -12.73324 -12.43602 -12.11874 -12.09172 -12.05362 -11.62064 -11.44737 -11.35416 -11.19210 -11.04819 -10.77085 -10.52903 -10.36292 -10.17857 -9.92063 -9.66099 -5.11554 -0.57919 -0.01428 0.03557 0.20212 0.64138 1.08049 1.45126 1.68338 1.79955 1.87303 2.49055 2.57921 2.97324 3.15397 3.27553 3.45967 3.50160 3.51238 3.60147 3.65213 3.72237 3.74930 3.81172 3.93925 3.98799 4.04136 4.16133 4.17502 4.31768 4.37385 4.48837 4.54351 4.57742 4.67185 4.79523 4.81692 4.84748 4.86667 4.91192 4.97244 5.14531 5.25927 5.28529 5.36593 5.49179 5.73422 6.26674 6.28187 6.62508 7.02614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.073 4.073 3 Si 0.683 3.317 4 C -0.131 4.131 5 C 0.013 3.987 6 C -0.190 4.190 7 C 0.570 3.430 8 O -0.526 6.526 9 N -0.708 5.708 10 C 0.120 3.880 11 H 0.109 0.891 12 C -0.135 4.135 13 C -0.075 4.075 14 H 0.100 0.900 15 C -0.065 4.065 16 C -0.102 4.102 17 C -0.110 4.110 18 C -0.095 4.095 19 C -0.088 4.088 20 Br -0.050 7.050 21 C -0.087 4.087 22 C -0.144 4.144 23 C 0.140 3.860 24 N -0.477 5.477 25 C 0.131 3.869 26 H 0.384 0.616 27 H 0.083 0.917 28 H -0.255 1.255 29 H -0.250 1.250 30 H 0.151 0.849 31 H 0.401 0.599 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.161 0.839 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 0.346 -1.855 3.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.183 4.183 3 Si 0.583 3.417 4 C -0.134 4.134 5 C -0.013 4.013 6 C -0.195 4.195 7 C 0.356 3.644 8 O -0.402 6.402 9 N -0.360 5.360 10 C 0.015 3.985 11 H 0.127 0.873 12 C -0.173 4.173 13 C -0.093 4.093 14 H 0.118 0.882 15 C -0.066 4.066 16 C -0.120 4.120 17 C -0.128 4.128 18 C -0.115 4.115 19 C -0.167 4.167 20 Br 0.036 6.964 21 C -0.107 4.107 22 C -0.182 4.182 23 C -0.019 4.019 24 N -0.184 5.184 25 C -0.025 4.025 26 H 0.233 0.767 27 H 0.101 0.899 28 H -0.179 1.179 29 H -0.174 1.174 30 H 0.169 0.831 31 H 0.237 0.763 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.178 0.822 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.988 1.028 -0.598 3.216 hybrid contribution -1.494 -0.515 -1.032 1.887 sum 1.494 0.513 -1.629 2.269 Atomic orbital electron populations 1.86587 1.17313 1.80275 1.50056 1.24705 0.84900 1.11242 0.97475 0.95105 0.91374 0.74120 0.81057 1.20294 1.01046 0.94520 0.97494 1.21606 0.91396 0.93329 0.94981 1.20979 1.05071 0.94967 0.98461 1.17985 0.78691 0.86374 0.81326 1.90819 1.39978 1.64392 1.45032 1.45553 1.57706 1.10177 1.22555 1.21880 0.96458 0.81137 0.99066 0.87275 1.23440 0.97779 1.02272 0.93764 1.21629 0.97808 0.97529 0.92336 0.88176 1.19669 0.98443 0.94897 0.93607 1.21181 0.98294 0.92654 0.99895 1.21202 0.99398 0.99844 0.92400 1.21176 0.97717 0.95070 0.97529 1.21846 1.05825 0.97143 0.91884 1.96787 1.89833 1.94853 1.14934 1.21025 0.99161 0.98841 0.91702 1.23588 0.96593 1.03494 0.94561 1.23023 0.92143 0.89558 0.97196 1.67755 1.19681 1.10429 1.20541 1.22898 0.91618 1.00022 0.87947 0.76721 0.89870 1.17924 1.17426 0.83117 0.76302 0.88087 0.90167 0.85161 0.84910 0.84957 0.85040 0.90449 0.88406 0.82165 0.81950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.18 12.82 -35.23 -0.45 -0.63 16 2 C -0.07 0.09 2.81 36.01 0.10 0.19 16 3 Si 0.68 -1.51 29.88 -169.99 -5.08 -6.59 16 4 C -0.13 -0.06 5.39 -104.54 -0.56 -0.62 16 5 C 0.01 0.02 9.38 -38.87 -0.36 -0.35 16 6 C -0.19 -0.15 5.89 -104.82 -0.62 -0.77 16 7 C 0.57 0.87 7.78 -12.33 -0.10 0.77 16 8 O -0.53 -2.76 16.02 5.32 0.09 -2.68 16 9 N -0.71 1.13 5.22 -53.96 -0.28 0.85 16 10 C 0.12 -0.20 4.32 -67.12 -0.29 -0.49 16 11 H 0.11 -0.01 7.46 -51.93 -0.39 -0.40 16 12 C -0.13 0.42 7.29 -25.92 -0.19 0.24 16 13 C -0.07 0.20 3.85 -90.96 -0.35 -0.15 16 14 H 0.10 -0.35 8.09 -51.93 -0.42 -0.77 16 15 C -0.07 0.07 5.29 -104.63 -0.55 -0.48 16 16 C -0.10 0.13 8.63 -39.58 -0.34 -0.21 16 17 C -0.11 0.10 10.05 -39.59 -0.40 -0.29 16 18 C -0.10 -0.01 9.79 -39.56 -0.39 -0.40 16 19 C -0.09 -0.07 6.22 -39.52 -0.25 -0.32 16 20 Br -0.05 -0.06 33.70 -68.01 -2.29 -2.35 16 21 C -0.09 0.01 9.45 -39.56 -0.37 -0.37 16 22 C -0.14 0.29 7.25 -25.92 -0.19 0.10 16 23 C 0.14 -0.07 10.71 -17.13 -0.18 -0.25 16 24 N -0.48 -0.51 10.35 -12.91 -0.13 -0.65 16 25 C 0.13 0.04 9.84 -17.47 -0.17 -0.13 16 26 H 0.38 -1.42 8.74 45.56 0.40 -1.02 16 27 H 0.08 -0.24 7.96 -51.92 -0.41 -0.65 16 28 H -0.25 0.04 7.11 56.52 0.40 0.44 16 29 H -0.25 -0.18 7.05 56.52 0.40 0.22 16 30 H 0.15 0.26 7.74 -52.49 -0.41 -0.14 16 31 H 0.40 -1.68 6.77 -40.82 -0.28 -1.96 16 32 H 0.10 -0.33 7.73 -51.93 -0.40 -0.73 16 33 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 34 H 0.13 -0.39 6.65 -52.49 -0.35 -0.74 16 35 H 0.13 -0.37 8.06 -52.48 -0.42 -0.79 16 36 H 0.13 -0.12 8.06 -52.48 -0.42 -0.54 16 37 H 0.13 -0.15 8.05 -52.49 -0.42 -0.57 16 38 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 39 H 0.10 -0.24 6.31 -51.93 -0.33 -0.56 16 40 H 0.16 -0.62 6.42 -52.49 -0.34 -0.96 16 41 H 0.16 -0.28 4.87 -52.49 -0.26 -0.54 16 LS Contribution 365.28 15.07 5.50 5.50 Total: 0.00 -8.67 365.28 -12.35 -21.02 By element: Atomic # 1 Polarization: -6.45 SS G_CDS: -4.49 Total: -10.95 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -5.21 Total: -3.53 kcal Atomic # 7 Polarization: 0.62 SS G_CDS: -0.42 Total: 0.20 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: -0.37 Total: -3.31 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: -5.08 Total: -6.59 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -2.29 Total: -2.35 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -8.67 -12.35 -21.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.016 kcal (2) G-P(sol) polarization free energy of solvation -8.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds