Wall clock time and date at job start Sun Mar 7 2021 01:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47115 * 2 1 4 4 C 1.50700 * 109.47532 * 120.00474 * 2 1 3 5 5 C 1.38357 * 120.34826 * 64.99504 * 4 2 1 6 6 C 1.40021 * 118.28790 * 180.02562 * 5 4 2 7 7 C 1.47836 * 120.56146 * 179.97438 * 6 5 4 8 8 O 1.21553 * 119.99786 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99999 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99694 * 180.02562 * 9 7 6 11 11 H 1.08994 * 112.85405 * 23.80027 * 10 9 7 12 12 C 1.53778 * 113.61191 * 155.00177 * 10 9 7 13 13 C 1.53780 * 87.08588 * 89.11379 * 12 10 9 14 14 H 1.09001 * 113.61462 * 270.88832 * 13 12 10 15 15 C 1.50696 * 113.61843 * 140.06258 * 13 12 10 16 16 C 1.38222 * 119.99308 * 299.72546 * 15 13 12 17 17 C 1.38265 * 120.01748 * 179.76231 * 16 15 13 18 18 C 1.38192 * 120.01145 * 0.51755 * 17 16 15 19 19 C 1.38348 * 119.98913 * 359.73520 * 18 17 16 20 20 Br 1.89105 * 120.00972 * 180.02562 * 19 18 17 21 21 C 1.38237 * 119.99666 * 120.00200 * 15 13 12 22 22 C 1.53780 * 113.61106 * 252.49541 * 10 9 7 23 23 C 1.39523 * 118.88112 * 0.02562 * 6 5 4 24 24 N 1.31694 * 120.56847 * 0.02562 * 23 6 5 25 25 C 1.31933 * 121.87963 * 359.97438 * 24 23 6 26 26 H 0.96701 * 114.00352 * 59.99532 * 1 2 3 27 27 H 1.09010 * 109.46743 * 240.00117 * 2 1 3 28 28 H 1.48499 * 110.00047 * 298.68432 * 3 2 1 29 29 H 1.48500 * 110.00037 * 60.00411 * 3 2 1 30 30 H 1.07994 * 120.85854 * 0.04271 * 5 4 2 31 31 H 0.96995 * 120.00170 * 0.02562 * 9 7 6 32 32 H 1.09007 * 113.61361 * 203.66393 * 12 10 9 33 33 H 1.08997 * 113.61717 * 334.48322 * 12 10 9 34 34 H 1.07999 * 119.99213 * 0.02562 * 16 15 13 35 35 H 1.08005 * 119.99688 * 180.23066 * 17 16 15 36 36 H 1.08003 * 120.01022 * 179.76764 * 18 17 16 37 37 H 1.08002 * 120.00279 * 359.95693 * 21 15 13 38 38 H 1.09002 * 113.61889 * 25.43415 * 22 10 9 39 39 H 1.09000 * 113.61181 * 156.33606 * 22 10 9 40 40 H 1.07998 * 119.72093 * 180.02562 * 23 6 5 41 41 H 1.08000 * 119.45770 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.6886 -2.0613 1.4057 6 6 2.1748 -2.6778 2.5651 7 6 1.9438 -4.1184 2.8037 8 8 1.3276 -4.7781 1.9896 9 7 2.4163 -4.7002 3.9238 10 6 2.1878 -6.1279 4.1599 11 1 2.0135 -6.6865 3.2404 12 6 3.2328 -6.7742 5.0847 13 6 2.3221 -6.3797 6.2594 14 1 2.5287 -5.3863 6.6576 15 6 2.2311 -7.4333 7.3330 16 6 1.7441 -8.6904 7.0280 17 6 1.6650 -9.6589 8.0116 18 6 2.0628 -9.3672 9.3025 19 6 2.5455 -8.1075 9.6093 20 35 3.0908 -7.7080 11.3754 21 6 2.6294 -7.1406 8.6240 22 6 1.1527 -6.4122 5.2611 23 6 2.8799 -1.9094 3.4919 24 7 3.0845 -0.6258 3.2803 25 6 2.6384 -0.0183 2.1974 26 1 -0.3934 0.4418 -0.7650 27 1 1.7923 -0.5139 -0.8901 28 1 1.5878 2.4586 -1.2242 29 1 1.5615 2.4678 1.2085 30 1 1.1387 -2.6257 0.6673 31 1 2.9076 -4.1737 4.5736 32 1 3.3288 -7.8516 4.9493 33 1 4.1939 -6.2602 5.0840 34 1 1.4292 -8.9175 6.0202 35 1 1.2878 -10.6422 7.7721 36 1 1.9975 -10.1227 10.0716 37 1 3.0064 -6.1572 8.8630 38 1 0.4342 -5.6050 5.4040 39 1 0.6801 -7.3905 5.1740 40 1 3.2613 -2.3712 4.3906 41 1 2.8283 1.0364 2.0638 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:39:44 Heat of formation + Delta-G solvation = 35.128080 kcal Electronic energy + Delta-G solvation = -25904.996138 eV Core-core repulsion = 21991.716119 eV Total energy + Delta-G solvation = -3913.280020 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.041 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.04837 -41.29520 -40.18206 -38.81915 -38.01662 -34.97722 -33.88975 -33.36689 -32.92689 -31.87829 -30.11038 -27.31691 -26.81701 -26.69667 -25.35955 -23.79476 -23.51463 -22.55485 -21.76881 -20.13296 -19.08271 -18.68787 -18.25373 -17.91574 -17.75785 -16.94246 -16.48012 -16.35264 -16.16333 -16.05167 -15.53921 -15.30889 -15.14223 -14.77863 -14.63527 -14.47385 -14.33150 -14.23773 -14.13093 -13.84709 -13.49600 -13.40086 -12.91079 -12.70747 -12.32846 -12.11709 -12.02334 -11.92843 -11.54634 -11.46632 -11.35160 -11.16246 -11.09630 -10.75072 -10.53857 -10.34449 -10.12450 -9.84506 -9.60551 -4.95462 -0.59254 -0.03571 0.10050 0.28611 0.64430 1.21346 1.57829 1.62071 1.87923 1.94122 2.57053 2.58883 3.06685 3.23979 3.43718 3.56484 3.59421 3.62707 3.67353 3.70530 3.76499 3.88064 3.96172 4.10022 4.11665 4.12593 4.21320 4.29905 4.42177 4.47651 4.62315 4.67220 4.77495 4.79805 4.83840 4.93251 4.94535 4.97686 5.02331 5.12104 5.22616 5.30141 5.36924 5.44791 5.61789 5.84634 6.33911 6.51779 6.63519 7.01685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.086 4.086 3 Si 0.770 3.230 4 C -0.138 4.138 5 C -0.002 4.002 6 C -0.197 4.197 7 C 0.569 3.431 8 O -0.572 6.572 9 N -0.692 5.692 10 C 0.114 3.886 11 H 0.092 0.908 12 C -0.122 4.122 13 C -0.068 4.068 14 H 0.112 0.888 15 C -0.066 4.066 16 C -0.105 4.105 17 C -0.114 4.114 18 C -0.109 4.109 19 C -0.103 4.103 20 Br -0.062 7.062 21 C -0.097 4.097 22 C -0.142 4.142 23 C 0.146 3.854 24 N -0.493 5.493 25 C 0.127 3.873 26 H 0.399 0.601 27 H 0.101 0.899 28 H -0.280 1.280 29 H -0.289 1.289 30 H 0.139 0.861 31 H 0.416 0.584 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.194 0.806 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 0.527 -1.788 4.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.194 4.194 3 Si 0.673 3.327 4 C -0.140 4.140 5 C -0.029 4.029 6 C -0.203 4.203 7 C 0.357 3.643 8 O -0.452 6.452 9 N -0.343 5.343 10 C 0.009 3.991 11 H 0.110 0.890 12 C -0.160 4.160 13 C -0.086 4.086 14 H 0.130 0.870 15 C -0.067 4.067 16 C -0.123 4.123 17 C -0.133 4.133 18 C -0.128 4.128 19 C -0.182 4.182 20 Br 0.023 6.977 21 C -0.117 4.117 22 C -0.181 4.181 23 C -0.012 4.012 24 N -0.201 5.201 25 C -0.029 4.029 26 H 0.250 0.750 27 H 0.119 0.881 28 H -0.207 1.207 29 H -0.217 1.217 30 H 0.157 0.843 31 H 0.254 0.746 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.211 0.789 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.860 1.197 -0.510 4.073 hybrid contribution -1.810 -0.586 -1.066 2.181 sum 2.050 0.611 -1.577 2.658 Atomic orbital electron populations 1.86540 1.18243 1.80896 1.51316 1.24997 0.84372 1.12499 0.97565 0.94135 0.89932 0.71280 0.77322 1.20462 1.01087 0.94201 0.98212 1.21666 0.91903 0.93948 0.95335 1.20993 1.05740 0.94717 0.98803 1.18131 0.78188 0.86523 0.81481 1.90794 1.42298 1.65342 1.46734 1.45445 1.56647 1.10421 1.21808 1.21914 0.97681 0.80842 0.98643 0.89013 1.23390 0.97712 1.02530 0.92383 1.21635 0.97383 0.97759 0.91813 0.86957 1.19834 0.97977 0.95370 0.93540 1.21448 0.97731 0.92498 1.00642 1.21460 0.98994 1.00799 0.92014 1.21344 0.98124 0.95076 0.98285 1.21965 1.06821 0.97835 0.91584 1.96760 1.90002 1.94916 1.15973 1.21189 0.99451 0.99080 0.91973 1.23584 0.96544 1.03397 0.94570 1.23473 0.91042 0.89032 0.97676 1.67818 1.20282 1.11058 1.20927 1.23189 0.91220 1.00760 0.87698 0.74990 0.88111 1.20676 1.21659 0.84303 0.74570 0.87622 0.89047 0.83523 0.83223 0.84594 0.84323 0.91461 0.87972 0.78923 0.80416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.71 12.82 -148.98 -1.91 -2.62 16 2 C -0.09 0.18 2.81 71.24 0.20 0.38 16 3 Si 0.77 -3.55 29.88 68.60 2.05 -1.50 16 4 C -0.14 -0.18 5.39 -19.81 -0.11 -0.29 16 5 C 0.00 -0.01 9.38 22.73 0.21 0.21 16 6 C -0.20 -0.40 5.89 -19.99 -0.12 -0.52 16 7 C 0.57 2.13 7.78 86.78 0.68 2.81 16 8 O -0.57 -7.03 16.02 -3.88 -0.06 -7.09 16 9 N -0.69 2.50 5.22 -442.92 -2.31 0.19 16 10 C 0.11 -0.42 4.32 45.51 0.20 -0.22 16 11 H 0.09 0.05 7.46 -2.39 -0.02 0.03 16 12 C -0.12 0.94 7.29 31.12 0.23 1.16 16 13 C -0.07 0.45 3.85 -11.01 -0.04 0.41 16 14 H 0.11 -1.00 8.09 -2.39 -0.02 -1.02 16 15 C -0.07 0.20 5.29 -19.87 -0.11 0.10 16 16 C -0.11 0.38 8.63 22.27 0.19 0.57 16 17 C -0.11 0.28 10.05 22.27 0.22 0.51 16 18 C -0.11 -0.03 9.79 22.28 0.22 0.19 16 19 C -0.10 -0.18 6.22 22.31 0.14 -0.04 16 20 Br -0.06 -0.18 33.70 -20.37 -0.69 -0.87 16 21 C -0.10 0.05 9.45 22.29 0.21 0.26 16 22 C -0.14 0.64 7.25 31.12 0.23 0.86 16 23 C 0.15 -0.24 10.71 85.02 0.91 0.67 16 24 N -0.49 -0.78 10.35 -194.75 -2.01 -2.79 16 25 C 0.13 0.06 9.84 84.70 0.83 0.89 16 26 H 0.40 -2.77 8.74 -74.06 -0.65 -3.42 16 27 H 0.10 -0.60 7.96 -2.38 -0.02 -0.62 16 28 H -0.28 0.12 7.11 99.48 0.71 0.82 16 29 H -0.29 -0.56 7.05 99.48 0.70 0.14 16 30 H 0.14 0.81 7.74 -2.91 -0.02 0.78 16 31 H 0.42 -4.10 6.77 -92.71 -0.63 -4.73 16 32 H 0.11 -0.85 7.73 -2.38 -0.02 -0.87 16 33 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H 0.15 -1.08 6.65 -2.91 -0.02 -1.10 16 35 H 0.15 -0.98 8.06 -2.91 -0.02 -1.00 16 36 H 0.14 -0.19 8.06 -2.91 -0.02 -0.21 16 37 H 0.14 -0.39 8.05 -2.91 -0.02 -0.41 16 38 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.10 -0.55 6.31 -2.39 -0.02 -0.56 16 40 H 0.19 -1.87 6.42 -2.91 -0.02 -1.89 16 41 H 0.18 -0.68 4.87 -2.91 -0.01 -0.70 16 Total: 0.00 -21.54 365.28 -0.98 -22.52 By element: Atomic # 1 Polarization: -15.64 SS G_CDS: -0.14 Total: -15.78 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 4.09 Total: 7.94 kcal Atomic # 7 Polarization: 1.72 SS G_CDS: -4.33 Total: -2.61 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -1.97 Total: -9.71 kcal Atomic # 14 Polarization: -3.55 SS G_CDS: 2.05 Total: -1.50 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -0.69 Total: -0.87 kcal Total: -21.54 -0.98 -22.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.644 kcal (2) G-P(sol) polarization free energy of solvation -21.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds