Wall clock time and date at job start Sun Mar 7 2021 01:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36418 * 125.80690 * 2 1 4 4 C 1.47383 * 127.18586 * 0.02562 * 3 2 1 5 5 O 1.21609 * 120.00028 * 359.70377 * 4 3 2 6 6 N 1.34780 * 119.99405 * 179.70878 * 4 3 2 7 7 C 1.46497 * 119.99653 * 179.97438 * 6 4 3 8 8 H 1.09002 * 112.84935 * 334.66222 * 7 6 4 9 9 C 1.53786 * 113.61643 * 105.85894 * 7 6 4 10 10 C 1.53962 * 87.01719 * 89.22773 * 9 7 6 11 11 H 1.09002 * 113.61454 * 270.79954 * 10 9 7 12 12 C 1.50699 * 113.66451 * 139.93336 * 10 9 7 13 13 C 1.38197 * 119.99104 * 142.43774 * 12 10 9 14 14 C 1.38349 * 119.98751 * 179.97438 * 13 12 10 15 15 Br 1.89099 * 120.01059 * 179.97438 * 14 13 12 16 16 C 1.38311 * 119.97821 * 0.02562 * 14 13 12 17 17 C 1.38231 * 119.99090 * 359.97438 * 16 14 13 18 18 C 1.38226 * 120.00951 * 359.72857 * 17 16 14 19 19 C 1.53781 * 113.61305 * 203.46742 * 7 6 4 20 20 C 1.47020 * 105.61727 * 179.75047 * 3 2 1 21 21 C 1.34177 * 105.95366 * 0.22950 * 20 3 2 22 22 C 1.50701 * 125.44038 * 180.02562 * 21 20 3 23 23 O 1.42894 * 109.47082 * 64.99325 * 22 21 20 24 24 Si 1.86298 * 109.47528 * 184.99956 * 22 21 20 25 25 O 1.33655 * 125.79706 * 180.14268 * 2 1 3 26 26 H 1.09003 * 109.46729 * 89.99530 * 1 2 3 27 27 H 1.08996 * 109.47508 * 209.99958 * 1 2 3 28 28 H 1.09000 * 109.46788 * 330.00367 * 1 2 3 29 29 H 0.96995 * 120.00200 * 359.97438 * 6 4 3 30 30 H 1.08993 * 113.61491 * 203.74894 * 9 7 6 31 31 H 1.09000 * 113.61138 * 334.65232 * 9 7 6 32 32 H 1.07998 * 120.00696 * 359.97438 * 13 12 10 33 33 H 1.07998 * 120.00168 * 180.02562 * 16 14 13 34 34 H 1.08000 * 119.99923 * 180.02562 * 17 16 14 35 35 H 1.08001 * 119.98728 * 180.27463 * 18 17 16 36 36 H 1.09001 * 113.61695 * 25.34675 * 19 7 6 37 37 H 1.08997 * 113.61223 * 156.25258 * 19 7 6 38 38 H 1.07994 * 127.02460 * 180.20276 * 20 3 2 39 39 H 1.09001 * 109.46799 * 304.99726 * 22 21 20 40 40 H 0.96700 * 114.00270 * 60.00565 * 23 22 21 41 41 H 1.48504 * 110.00075 * 58.67793 * 24 22 21 42 42 H 1.48495 * 110.00071 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3051 1.1063 0.0000 4 6 1.8740 2.5157 0.0005 5 8 0.6891 2.7891 -0.0044 6 7 2.7932 3.5014 0.0064 7 6 2.3648 4.9024 0.0063 8 1 1.3749 5.0423 -0.4281 9 6 2.5463 5.6022 1.3637 10 6 3.9607 5.9813 0.8883 11 1 4.7174 5.2350 1.1304 12 6 4.3735 7.3789 1.2720 13 6 5.6786 7.6353 1.6473 14 6 6.0575 8.9186 1.9990 15 35 7.8430 9.2700 2.5133 16 6 5.1298 9.9441 1.9755 17 6 3.8246 9.6867 1.6000 18 6 3.4479 8.4056 1.2427 19 6 3.4233 5.8702 -0.5483 20 6 3.6850 0.5989 0.0062 21 6 3.5859 -0.7392 0.0041 22 6 4.7457 -1.7013 0.0091 23 8 5.4694 -1.5685 1.2341 24 14 4.1075 -3.4444 -0.1494 25 8 2.2888 -1.0841 -0.0027 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 3.7383 3.2833 0.0106 30 1 1.8884 6.4597 1.5042 31 1 2.5386 4.9179 2.2121 32 1 6.4025 6.8342 1.6659 33 1 5.4253 10.9461 2.2496 34 1 3.1002 10.4874 1.5812 35 1 2.4291 8.2057 0.9452 36 1 4.1226 5.4022 -1.2411 37 1 3.0056 6.8012 -0.9314 38 1 4.5929 1.1837 0.0109 39 1 5.4062 -1.4786 -0.8289 40 1 4.9427 -1.7524 2.0240 41 1 3.3261 -3.5870 -1.4041 42 1 5.2418 -4.4028 -0.1463 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:39:48 Heat of formation + Delta-G solvation = 8.516939 kcal Electronic energy + Delta-G solvation = -26910.800037 eV Core-core repulsion = 22871.335931 eV Total energy + Delta-G solvation = -4039.464106 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 392.046 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.77505 -41.56290 -40.28450 -38.80599 -37.99191 -34.85478 -34.02767 -33.20804 -33.01839 -31.99342 -30.14239 -29.38219 -26.72463 -26.69130 -25.62511 -24.30660 -23.52675 -22.74174 -22.07737 -20.83886 -19.93857 -18.96640 -18.21521 -17.84743 -17.65880 -17.05011 -16.77006 -16.50445 -16.16925 -15.98455 -15.85447 -15.65604 -15.09056 -15.00072 -14.63761 -14.49446 -14.33888 -14.26950 -14.12766 -13.94007 -13.82847 -13.48418 -13.40391 -12.91509 -12.86118 -12.76926 -12.34191 -12.25516 -12.02779 -11.92608 -11.55621 -11.38003 -11.17110 -11.15536 -10.94331 -10.60569 -10.13797 -9.85915 -9.62689 -9.58233 -5.00662 0.08831 0.21789 0.27420 0.63007 0.82000 1.16940 1.40499 1.74781 1.90834 2.09902 2.21912 2.56755 3.21870 3.42703 3.47520 3.59502 3.65433 3.74188 3.77302 3.87107 3.94987 4.09068 4.10671 4.11464 4.28384 4.31019 4.41123 4.45312 4.59346 4.60749 4.65855 4.66678 4.75781 4.77000 4.86938 4.93177 4.96595 5.00799 5.10922 5.16327 5.21159 5.21828 5.36175 5.47457 5.62548 5.83429 5.89094 6.45931 6.61862 7.14029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.086 3.914 3 C -0.270 4.270 4 C 0.592 3.408 5 O -0.572 6.572 6 N -0.696 5.696 7 C 0.117 3.883 8 H 0.092 0.908 9 C -0.139 4.139 10 C -0.067 4.067 11 H 0.107 0.893 12 C -0.067 4.067 13 C -0.099 4.099 14 C -0.103 4.103 15 Br -0.062 7.062 16 C -0.108 4.108 17 C -0.113 4.113 18 C -0.104 4.104 19 C -0.124 4.124 20 C -0.148 4.148 21 C -0.060 4.060 22 C -0.023 4.023 23 O -0.540 6.540 24 Si 0.775 3.225 25 O -0.171 6.171 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.412 0.588 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.176 0.824 39 H 0.140 0.860 40 H 0.400 0.600 41 H -0.296 1.296 42 H -0.280 1.280 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.908 -1.030 0.765 1.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.033 3.967 3 C -0.274 4.274 4 C 0.381 3.619 5 O -0.453 6.453 6 N -0.346 5.346 7 C 0.011 3.989 8 H 0.110 0.890 9 C -0.178 4.178 10 C -0.085 4.085 11 H 0.125 0.875 12 C -0.068 4.068 13 C -0.118 4.118 14 C -0.182 4.182 15 Br 0.024 6.976 16 C -0.128 4.128 17 C -0.132 4.132 18 C -0.122 4.122 19 C -0.162 4.162 20 C -0.167 4.167 21 C -0.108 4.108 22 C -0.134 4.134 23 O -0.348 6.348 24 Si 0.680 3.320 25 O -0.068 6.068 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.249 0.751 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.194 0.806 39 H 0.157 0.843 40 H 0.250 0.750 41 H -0.223 1.223 42 H -0.206 1.206 Dipole moment (debyes) X Y Z Total from point charges -0.648 -1.573 0.088 1.703 hybrid contribution 0.515 0.674 -0.359 0.921 sum -0.133 -0.898 -0.271 0.948 Atomic orbital electron populations 1.20717 0.82530 1.05771 1.05099 1.23245 0.94803 0.82987 0.95674 1.21204 0.94203 0.93491 1.18522 1.17337 0.85199 0.84345 0.75000 1.90756 1.17876 1.84478 1.52165 1.45373 1.09925 1.04954 1.74389 1.21873 0.99470 0.79795 0.97720 0.89024 1.23589 0.96161 1.00854 0.97183 1.21624 0.97324 0.92733 0.96827 0.87521 1.19832 0.92558 0.95952 0.98419 1.21172 0.96936 0.95104 0.98625 1.21961 0.91611 0.97189 1.07421 1.96757 1.14057 1.95969 1.90830 1.21353 0.93338 0.98797 0.99266 1.21470 0.95608 0.97983 0.98097 1.21445 1.00545 0.92211 0.98035 1.23385 0.97363 0.99728 0.95711 1.22792 0.96420 0.93684 1.03832 1.22903 0.82895 0.96030 1.09002 1.24452 0.90343 1.07125 0.91434 1.86533 1.39644 1.93128 1.15503 0.93263 0.79758 0.72924 0.86050 1.83676 1.16734 1.34966 1.71426 0.88611 0.87956 0.88355 0.75115 0.87845 0.91514 0.84574 0.84480 0.83064 0.83445 0.89687 0.87527 0.80637 0.84338 0.74959 1.22281 1.20627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.04 9.89 71.24 0.70 0.74 16 2 C 0.09 0.24 7.37 25.26 0.19 0.43 16 3 C -0.27 -0.87 6.31 -18.99 -0.12 -0.99 16 4 C 0.59 2.98 7.81 86.65 0.68 3.66 16 5 O -0.57 -6.39 14.47 -4.06 -0.06 -6.45 16 6 N -0.70 0.77 5.26 -443.33 -2.33 -1.57 16 7 C 0.12 -0.25 4.29 45.52 0.20 -0.05 16 8 H 0.09 0.14 7.50 -2.39 -0.02 0.12 16 9 C -0.14 0.48 7.27 31.18 0.23 0.70 16 10 C -0.07 0.34 3.87 -10.95 -0.04 0.29 16 11 H 0.11 -0.68 8.09 -2.39 -0.02 -0.70 16 12 C -0.07 0.14 5.29 -19.87 -0.11 0.04 16 13 C -0.10 -0.04 9.45 22.29 0.21 0.17 16 14 C -0.10 -0.24 6.22 22.31 0.14 -0.10 16 15 Br -0.06 -0.20 33.70 -20.37 -0.69 -0.89 16 16 C -0.11 -0.06 9.79 22.29 0.22 0.16 16 17 C -0.11 0.26 10.05 22.27 0.22 0.48 16 18 C -0.10 0.32 8.60 22.27 0.19 0.51 16 19 C -0.12 0.72 7.29 31.12 0.23 0.95 16 20 C -0.15 0.09 10.48 23.65 0.25 0.34 16 21 C -0.06 0.03 6.18 24.76 0.15 0.19 16 22 C -0.02 0.08 2.97 71.24 0.21 0.29 16 23 O -0.54 2.03 12.88 -148.98 -1.92 0.11 16 24 Si 0.78 -2.25 32.09 68.60 2.20 -0.05 16 25 O -0.17 -0.25 8.90 4.40 0.04 -0.21 16 26 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H 0.10 0.26 6.49 -2.39 -0.02 0.24 16 29 H 0.41 -2.34 7.88 -92.71 -0.73 -3.07 16 30 H 0.10 -0.50 6.34 -2.39 -0.02 -0.51 16 31 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.14 -0.20 8.05 -2.91 -0.02 -0.22 16 33 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 34 H 0.15 -0.99 8.06 -2.91 -0.02 -1.02 16 35 H 0.15 -1.03 6.68 -2.91 -0.02 -1.05 16 36 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H 0.11 -0.71 7.71 -2.39 -0.02 -0.73 16 38 H 0.18 -0.93 7.74 -2.91 -0.02 -0.95 16 39 H 0.14 -0.64 7.96 -2.39 -0.02 -0.66 16 40 H 0.40 -4.42 8.70 -74.06 -0.64 -5.06 16 41 H -0.30 -1.25 7.11 99.48 0.71 -0.55 16 42 H -0.28 -0.73 7.11 99.48 0.71 -0.03 16 Total: 0.00 -17.50 376.48 0.53 -16.96 By element: Atomic # 1 Polarization: -15.46 SS G_CDS: -0.26 Total: -15.72 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 3.54 Total: 7.81 kcal Atomic # 7 Polarization: 0.77 SS G_CDS: -2.33 Total: -1.57 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -1.94 Total: -6.55 kcal Atomic # 14 Polarization: -2.25 SS G_CDS: 2.20 Total: -0.05 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -0.69 Total: -0.89 kcal Total: -17.50 0.53 -16.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.481 kcal (2) G-P(sol) polarization free energy of solvation -17.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds