Wall clock time and date at job start Sun Mar 7 2021 01:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86301 * 109.47019 * 2 1 4 4 C 1.50696 * 109.47241 * 239.99556 * 2 1 3 5 5 C 1.33746 * 125.12014 * 300.00503 * 4 2 1 6 6 C 1.37797 * 115.07839 * 179.97438 * 5 4 2 7 7 C 1.34979 * 114.70452 * 359.97438 * 6 5 4 8 8 C 1.47564 * 125.27534 * 179.97438 * 7 6 5 9 9 C 1.39826 * 119.99614 * 180.02562 * 8 7 6 10 10 C 1.36564 * 119.99794 * 179.97438 * 9 8 7 11 11 C 1.39831 * 119.99787 * 0.02562 * 10 9 8 12 12 C 1.47561 * 119.99805 * 180.02562 * 11 10 9 13 13 O 1.21603 * 119.99976 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99925 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00005 * 180.02562 * 14 12 11 16 16 H 1.08996 * 112.85234 * 23.79397 * 15 14 12 17 17 C 1.53782 * 113.61921 * 154.99677 * 15 14 12 18 18 C 1.53784 * 87.07988 * 89.11105 * 17 15 14 19 19 H 1.08997 * 113.61707 * 270.79990 * 18 17 15 20 20 C 1.50698 * 113.61029 * 139.98176 * 18 17 15 21 21 C 1.38219 * 119.99897 * 301.78827 * 20 18 17 22 22 C 1.38270 * 120.02033 * 180.29778 * 21 20 18 23 23 C 1.38194 * 120.00827 * 359.72234 * 22 21 20 24 24 C 1.38346 * 119.99293 * 359.97438 * 23 22 21 25 25 Br 1.89101 * 120.01208 * 180.02562 * 24 23 22 26 26 C 1.38243 * 119.99141 * 121.52566 * 20 18 17 27 27 C 1.53776 * 87.17276 * 25.39402 * 18 17 15 28 28 C 1.39821 * 120.00009 * 0.28098 * 11 10 9 29 29 C 1.36565 * 119.99845 * 359.43547 * 28 11 10 30 30 S 1.75860 * 125.11724 * 120.28061 * 4 2 1 31 31 H 0.96699 * 113.99412 * 60.00211 * 1 2 3 32 32 H 1.09000 * 109.46840 * 119.99965 * 2 1 3 33 33 H 1.48500 * 109.99704 * 298.67579 * 3 2 1 34 34 H 1.48498 * 110.00297 * 60.00179 * 3 2 1 35 35 H 1.08001 * 122.45695 * 359.97438 * 5 4 2 36 36 H 1.08001 * 122.64803 * 179.97438 * 6 5 4 37 37 H 1.07998 * 119.99903 * 0.02562 * 9 8 7 38 38 H 1.07997 * 119.99593 * 180.02562 * 10 9 8 39 39 H 0.96996 * 119.99911 * 359.97438 * 14 12 11 40 40 H 1.09004 * 113.60821 * 334.56356 * 17 15 14 41 41 H 1.08991 * 113.61349 * 203.66377 * 17 15 14 42 42 H 1.07998 * 119.99200 * 359.97438 * 21 20 18 43 43 H 1.07992 * 119.99070 * 179.69648 * 22 21 20 44 44 H 1.08005 * 120.00287 * 179.97438 * 23 22 21 45 45 H 1.08002 * 120.00880 * 359.97438 * 26 20 18 46 46 H 1.09002 * 113.61444 * 89.15743 * 27 18 17 47 47 H 1.08997 * 113.61595 * 220.05752 * 27 18 17 48 48 H 1.08001 * 120.00285 * 179.69970 * 28 11 10 49 49 H 1.08000 * 120.00145 * 180.29920 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6721 -1.9848 -1.5428 6 6 2.2373 -2.4242 -2.7202 7 6 2.9660 -1.4968 -3.3766 8 6 3.6712 -1.7150 -4.6544 9 6 4.3971 -0.6728 -5.2390 10 6 5.0502 -0.8749 -6.4213 11 6 4.9924 -2.1239 -7.0473 12 6 5.6985 -2.3424 -8.3245 13 8 6.3310 -1.4364 -8.8322 14 7 5.6423 -3.5461 -8.9281 15 6 6.3438 -3.7632 -10.1958 16 1 7.1753 -3.0740 -10.3429 17 6 6.7102 -5.2344 -10.4531 18 6 5.3356 -5.3768 -11.1278 19 1 4.5384 -5.6579 -10.4397 20 6 5.3596 -6.2248 -12.3734 21 6 6.1793 -5.8769 -13.4306 22 6 6.1970 -6.6512 -14.5760 23 6 5.3995 -7.7765 -14.6620 24 6 4.5836 -8.1286 -13.6017 25 35 3.4926 -9.6687 -13.7185 26 6 4.5658 -7.3535 -12.4563 27 6 5.4023 -3.8665 -11.4095 28 6 4.2611 -3.1641 -6.4658 29 6 3.6129 -2.9637 -5.2807 30 16 2.9525 0.0092 -2.4681 31 1 -0.3932 0.4417 -0.7651 32 1 1.7924 -0.5138 0.8900 33 1 1.5880 2.4585 -1.2243 34 1 1.5616 2.4679 1.2085 35 1 1.0644 -2.6226 -0.9180 36 1 2.1074 -3.4310 -3.0887 37 1 4.4421 0.2917 -4.7553 38 1 5.6112 -0.0700 -6.8726 39 1 5.1381 -4.2688 -8.5229 40 1 6.8128 -5.8244 -9.5424 41 1 7.5482 -5.3622 -11.1381 42 1 6.8021 -4.9972 -13.3640 43 1 6.8340 -6.3762 -15.4036 44 1 5.4131 -8.3810 -15.5569 45 1 3.9288 -7.6279 -11.6284 46 1 5.8821 -3.6198 -12.3566 47 1 4.4506 -3.3539 -11.2699 48 1 4.2124 -4.1274 -6.9518 49 1 3.0520 -3.7687 -4.8291 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14189268_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:39:55 Heat of formation + Delta-G solvation = 50.432140 kcal Electronic energy + Delta-G solvation = -32870.391987 eV Core-core repulsion = 28288.373959 eV Total energy + Delta-G solvation = -4582.018028 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 470.034 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.83992 -40.96516 -39.96739 -39.24890 -38.66571 -37.50232 -34.88558 -33.57482 -33.15148 -32.42834 -31.95686 -30.52239 -30.11646 -27.48249 -26.87515 -26.29895 -24.78576 -24.04286 -23.65457 -23.49027 -22.59572 -21.80472 -20.34261 -20.21910 -19.26378 -18.74920 -18.10170 -17.73424 -17.23207 -16.73990 -16.63087 -16.39534 -16.32008 -16.23861 -16.05516 -15.98090 -15.57536 -15.19691 -15.12244 -14.87902 -14.65496 -14.53835 -14.47063 -14.39604 -14.21059 -13.83420 -13.67992 -13.66752 -13.56041 -13.28491 -13.16453 -12.98492 -12.58476 -12.43712 -12.37061 -12.16441 -12.08210 -12.05192 -11.62030 -11.57203 -11.43506 -11.19707 -11.01047 -10.90335 -10.67718 -10.26061 -10.16862 -9.92624 -9.66526 -9.60200 -9.08146 -5.13999 -0.93420 0.02967 0.19321 0.21155 0.27712 0.33657 0.63144 0.70476 1.14846 1.49989 1.52840 1.83730 1.95711 1.96806 2.48659 2.79220 3.20217 3.27761 3.35911 3.46649 3.53574 3.56881 3.62240 3.67145 3.73560 3.74855 3.81471 3.94057 3.98623 4.10567 4.16999 4.22554 4.31012 4.31362 4.42351 4.45784 4.49992 4.53453 4.55610 4.58756 4.70367 4.79854 4.82479 4.84550 4.87789 4.92841 4.97235 5.04018 5.13813 5.16766 5.21813 5.24433 5.26343 5.38388 5.40549 5.50946 5.66552 5.72872 6.23575 6.37164 7.12761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.523 6.523 2 C -0.033 4.033 3 Si 0.648 3.352 4 C -0.217 4.217 5 C -0.104 4.104 6 C -0.119 4.119 7 C -0.149 4.149 8 C 0.014 3.986 9 C -0.120 4.120 10 C -0.048 4.048 11 C -0.137 4.137 12 C 0.563 3.437 13 O -0.530 6.530 14 N -0.710 5.710 15 C 0.120 3.880 16 H 0.108 0.892 17 C -0.135 4.135 18 C -0.074 4.074 19 H 0.099 0.901 20 C -0.065 4.065 21 C -0.102 4.102 22 C -0.109 4.109 23 C -0.095 4.095 24 C -0.088 4.088 25 Br -0.050 7.050 26 C -0.088 4.088 27 C -0.143 4.143 28 C -0.078 4.078 29 C -0.110 4.110 30 S 0.134 5.866 31 H 0.378 0.622 32 H 0.128 0.872 33 H -0.240 1.240 34 H -0.234 1.234 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.142 0.858 39 H 0.401 0.599 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.097 0.903 47 H 0.077 0.923 48 H 0.130 0.870 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 -1.536 0.929 2.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.330 6.330 2 C -0.145 4.145 3 Si 0.547 3.453 4 C -0.334 4.334 5 C -0.134 4.134 6 C -0.149 4.149 7 C -0.266 4.266 8 C 0.012 3.988 9 C -0.139 4.139 10 C -0.067 4.067 11 C -0.140 4.140 12 C 0.351 3.649 13 O -0.407 6.407 14 N -0.362 5.362 15 C 0.014 3.986 16 H 0.126 0.874 17 C -0.173 4.173 18 C -0.093 4.093 19 H 0.117 0.883 20 C -0.066 4.066 21 C -0.120 4.120 22 C -0.128 4.128 23 C -0.115 4.115 24 C -0.167 4.167 25 Br 0.036 6.964 26 C -0.108 4.108 27 C -0.182 4.182 28 C -0.097 4.097 29 C -0.130 4.130 30 S 0.402 5.598 31 H 0.226 0.774 32 H 0.146 0.854 33 H -0.164 1.164 34 H -0.157 1.157 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.149 0.851 38 H 0.160 0.840 39 H 0.236 0.764 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.115 0.885 47 H 0.095 0.905 48 H 0.147 0.853 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.887 0.543 0.898 2.159 hybrid contribution -1.790 -1.825 -0.161 2.561 sum 0.097 -1.283 0.737 1.483 Atomic orbital electron populations 1.86631 1.17163 1.79909 1.49277 1.24376 0.83846 1.10044 0.96249 0.95231 0.91836 0.75183 0.83059 1.25042 1.06978 0.99079 1.02330 1.20003 1.01209 0.94824 0.97407 1.20390 0.98725 1.00508 0.95318 1.23089 1.05996 0.98064 0.99413 1.18302 0.95195 0.94084 0.91244 1.20982 0.97980 0.98747 0.96162 1.20949 0.95947 0.96238 0.93551 1.19981 1.02141 0.95642 0.96265 1.18210 0.80243 0.82317 0.84143 1.90816 1.42077 1.42147 1.65696 1.45577 1.53466 1.13523 1.23604 1.21899 0.95808 0.97762 0.83086 0.87351 1.23443 0.97078 0.95352 1.01443 1.21624 0.98681 0.94560 0.94418 0.88276 1.19680 0.96256 0.94986 0.95658 1.21178 0.98265 0.99677 0.92876 1.21203 0.98823 0.94491 0.98306 1.21175 0.95240 0.97357 0.97727 1.21846 1.00785 0.96085 0.97998 1.96784 1.66244 1.34706 1.98697 1.21024 0.99023 0.94094 0.96640 1.23607 1.01135 0.94517 0.98910 1.20949 0.95405 0.98118 0.95202 1.20868 1.00291 0.96383 0.95416 1.84172 1.48345 1.12744 1.14571 0.77396 0.85432 1.16379 1.15697 0.83653 0.83764 0.85112 0.84022 0.76356 0.90271 0.88127 0.85159 0.84903 0.84951 0.85090 0.88484 0.90475 0.85272 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.25 12.86 -35.23 -0.45 -0.70 16 2 C -0.03 0.03 2.96 36.00 0.11 0.13 16 3 Si 0.65 -0.71 30.96 -169.99 -5.26 -5.97 16 4 C -0.22 0.08 5.73 -35.89 -0.21 -0.12 16 5 C -0.10 0.04 10.00 -41.32 -0.41 -0.38 16 6 C -0.12 0.08 9.64 -40.90 -0.39 -0.32 16 7 C -0.15 0.00 6.37 -36.94 -0.24 -0.24 16 8 C 0.01 0.00 5.88 -104.91 -0.62 -0.62 16 9 C -0.12 -0.02 9.54 -39.59 -0.38 -0.39 16 10 C -0.05 -0.04 9.53 -39.59 -0.38 -0.42 16 11 C -0.14 -0.06 5.88 -104.91 -0.62 -0.68 16 12 C 0.56 0.93 7.76 -12.46 -0.10 0.83 16 13 O -0.53 -2.87 15.93 5.28 0.08 -2.78 16 14 N -0.71 0.97 5.21 -53.96 -0.28 0.68 16 15 C 0.12 -0.17 4.33 -67.02 -0.29 -0.46 16 16 H 0.11 0.02 7.46 -51.93 -0.39 -0.37 16 17 C -0.14 0.40 7.29 -25.92 -0.19 0.21 16 18 C -0.07 0.20 3.85 -90.96 -0.35 -0.15 16 19 H 0.10 -0.34 8.09 -51.93 -0.42 -0.76 16 20 C -0.06 0.07 5.29 -104.63 -0.55 -0.48 16 21 C -0.10 0.14 8.53 -39.58 -0.34 -0.20 16 22 C -0.11 0.11 10.05 -39.59 -0.40 -0.29 16 23 C -0.10 0.00 9.79 -39.56 -0.39 -0.39 16 24 C -0.09 -0.07 6.22 -39.51 -0.25 -0.31 16 25 Br -0.05 -0.06 33.70 -68.01 -2.29 -2.35 16 26 C -0.09 0.01 9.45 -39.55 -0.37 -0.36 16 27 C -0.14 0.27 7.27 -25.83 -0.19 0.09 16 28 C -0.08 0.13 9.48 -39.59 -0.38 -0.24 16 29 C -0.11 0.15 9.48 -39.60 -0.38 -0.22 16 30 S 0.13 -0.06 19.46 -107.50 -2.09 -2.15 16 31 H 0.38 -0.84 8.70 45.56 0.40 -0.44 16 32 H 0.13 -0.22 7.96 -51.93 -0.41 -0.64 16 33 H -0.24 -0.18 7.11 56.52 0.40 0.22 16 34 H -0.23 -0.37 7.11 56.52 0.40 0.03 16 35 H 0.15 -0.16 8.06 -52.49 -0.42 -0.59 16 36 H 0.14 -0.37 6.88 -52.49 -0.36 -0.73 16 37 H 0.13 -0.14 7.26 -52.49 -0.38 -0.52 16 38 H 0.14 0.12 7.64 -52.49 -0.40 -0.28 16 39 H 0.40 -1.56 6.71 -40.82 -0.27 -1.84 16 40 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 41 H 0.10 -0.32 7.62 -51.93 -0.40 -0.71 16 42 H 0.13 -0.39 6.73 -52.49 -0.35 -0.74 16 43 H 0.13 -0.38 8.06 -52.49 -0.42 -0.80 16 44 H 0.13 -0.13 8.06 -52.48 -0.42 -0.55 16 45 H 0.13 -0.16 8.05 -52.49 -0.42 -0.58 16 46 H 0.10 -0.22 6.41 -51.93 -0.33 -0.56 16 47 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 48 H 0.13 -0.60 6.38 -52.49 -0.34 -0.94 16 49 H 0.13 -0.45 6.74 -52.49 -0.35 -0.81 16 LS Contribution 439.73 15.07 6.63 6.63 Total: 0.00 -7.73 439.73 -16.71 -24.44 By element: Atomic # 1 Polarization: -7.03 SS G_CDS: -5.75 Total: -12.77 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -7.29 Total: -5.02 kcal Atomic # 7 Polarization: 0.97 SS G_CDS: -0.28 Total: 0.68 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: -0.37 Total: -3.48 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: -5.26 Total: -5.97 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.09 Total: -2.15 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -2.29 Total: -2.35 kcal Total LS contribution 6.63 Total: 6.63 kcal Total: -7.73 -16.71 -24.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.868 kcal (2) G-P(sol) polarization free energy of solvation -7.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -16.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds