Wall clock time and date at job start Sun Mar 7 2021 01:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86301 * 109.47019 * 2 1 4 4 C 1.50696 * 109.47241 * 239.99556 * 2 1 3 5 5 C 1.33746 * 125.12014 * 300.00503 * 4 2 1 6 6 C 1.37797 * 115.07839 * 179.97438 * 5 4 2 7 7 C 1.34979 * 114.70452 * 359.97438 * 6 5 4 8 8 C 1.47564 * 125.27534 * 179.97438 * 7 6 5 9 9 C 1.39826 * 119.99614 * 180.02562 * 8 7 6 10 10 C 1.36564 * 119.99794 * 179.97438 * 9 8 7 11 11 C 1.39831 * 119.99787 * 0.02562 * 10 9 8 12 12 C 1.47561 * 119.99805 * 180.02562 * 11 10 9 13 13 O 1.21603 * 119.99976 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99925 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00005 * 180.02562 * 14 12 11 16 16 H 1.08996 * 112.85234 * 23.79397 * 15 14 12 17 17 C 1.53782 * 113.61921 * 154.99677 * 15 14 12 18 18 C 1.53784 * 87.07988 * 89.11105 * 17 15 14 19 19 H 1.08997 * 113.61707 * 270.79990 * 18 17 15 20 20 C 1.50698 * 113.61029 * 139.98176 * 18 17 15 21 21 C 1.38219 * 119.99897 * 301.78827 * 20 18 17 22 22 C 1.38270 * 120.02033 * 180.29778 * 21 20 18 23 23 C 1.38194 * 120.00827 * 359.72234 * 22 21 20 24 24 C 1.38346 * 119.99293 * 359.97438 * 23 22 21 25 25 Br 1.89101 * 120.01208 * 180.02562 * 24 23 22 26 26 C 1.38243 * 119.99141 * 121.52566 * 20 18 17 27 27 C 1.53776 * 87.17276 * 25.39402 * 18 17 15 28 28 C 1.39821 * 120.00009 * 0.28098 * 11 10 9 29 29 C 1.36565 * 119.99845 * 359.43547 * 28 11 10 30 30 S 1.75860 * 125.11724 * 120.28061 * 4 2 1 31 31 H 0.96699 * 113.99412 * 60.00211 * 1 2 3 32 32 H 1.09000 * 109.46840 * 119.99965 * 2 1 3 33 33 H 1.48500 * 109.99704 * 298.67579 * 3 2 1 34 34 H 1.48498 * 110.00297 * 60.00179 * 3 2 1 35 35 H 1.08001 * 122.45695 * 359.97438 * 5 4 2 36 36 H 1.08001 * 122.64803 * 179.97438 * 6 5 4 37 37 H 1.07998 * 119.99903 * 0.02562 * 9 8 7 38 38 H 1.07997 * 119.99593 * 180.02562 * 10 9 8 39 39 H 0.96996 * 119.99911 * 359.97438 * 14 12 11 40 40 H 1.09004 * 113.60821 * 334.56356 * 17 15 14 41 41 H 1.08991 * 113.61349 * 203.66377 * 17 15 14 42 42 H 1.07998 * 119.99200 * 359.97438 * 21 20 18 43 43 H 1.07992 * 119.99070 * 179.69648 * 22 21 20 44 44 H 1.08005 * 120.00287 * 179.97438 * 23 22 21 45 45 H 1.08002 * 120.00880 * 359.97438 * 26 20 18 46 46 H 1.09002 * 113.61444 * 89.15743 * 27 18 17 47 47 H 1.08997 * 113.61595 * 220.05752 * 27 18 17 48 48 H 1.08001 * 120.00285 * 179.69970 * 28 11 10 49 49 H 1.08000 * 120.00145 * 180.29920 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6721 -1.9848 -1.5428 6 6 2.2373 -2.4242 -2.7202 7 6 2.9660 -1.4968 -3.3766 8 6 3.6712 -1.7150 -4.6544 9 6 4.3971 -0.6728 -5.2390 10 6 5.0502 -0.8749 -6.4213 11 6 4.9924 -2.1239 -7.0473 12 6 5.6985 -2.3424 -8.3245 13 8 6.3310 -1.4364 -8.8322 14 7 5.6423 -3.5461 -8.9281 15 6 6.3438 -3.7632 -10.1958 16 1 7.1753 -3.0740 -10.3429 17 6 6.7102 -5.2344 -10.4531 18 6 5.3356 -5.3768 -11.1278 19 1 4.5384 -5.6579 -10.4397 20 6 5.3596 -6.2248 -12.3734 21 6 6.1793 -5.8769 -13.4306 22 6 6.1970 -6.6512 -14.5760 23 6 5.3995 -7.7765 -14.6620 24 6 4.5836 -8.1286 -13.6017 25 35 3.4926 -9.6687 -13.7185 26 6 4.5658 -7.3535 -12.4563 27 6 5.4023 -3.8665 -11.4095 28 6 4.2611 -3.1641 -6.4658 29 6 3.6129 -2.9637 -5.2807 30 16 2.9525 0.0092 -2.4681 31 1 -0.3932 0.4417 -0.7651 32 1 1.7924 -0.5138 0.8900 33 1 1.5880 2.4585 -1.2243 34 1 1.5616 2.4679 1.2085 35 1 1.0644 -2.6226 -0.9180 36 1 2.1074 -3.4310 -3.0887 37 1 4.4421 0.2917 -4.7553 38 1 5.6112 -0.0700 -6.8726 39 1 5.1381 -4.2688 -8.5229 40 1 6.8128 -5.8244 -9.5424 41 1 7.5482 -5.3622 -11.1381 42 1 6.8021 -4.9972 -13.3640 43 1 6.8340 -6.3762 -15.4036 44 1 5.4131 -8.3810 -15.5569 45 1 3.9288 -7.6279 -11.6284 46 1 5.8821 -3.6198 -12.3566 47 1 4.4506 -3.3539 -11.2699 48 1 4.2124 -4.1274 -6.9518 49 1 3.0520 -3.7687 -4.8291 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:39:53 Heat of formation + Delta-G solvation = 58.398916 kcal Electronic energy + Delta-G solvation = -32870.046521 eV Core-core repulsion = 28288.373959 eV Total energy + Delta-G solvation = -4581.672563 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 470.034 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.78574 -40.89080 -39.92558 -39.17641 -38.65821 -37.46812 -34.90646 -33.52091 -33.09665 -32.34449 -31.87426 -30.46984 -30.06794 -27.42818 -26.69333 -26.19231 -24.72200 -23.97108 -23.56004 -23.41451 -22.50805 -21.79792 -20.27782 -20.11676 -19.19302 -18.70572 -18.00748 -17.69365 -17.18917 -16.65832 -16.55531 -16.33882 -16.25585 -16.17049 -16.02131 -15.97201 -15.52922 -15.12558 -15.07875 -14.78817 -14.56146 -14.43774 -14.41790 -14.33505 -14.16810 -13.79941 -13.62510 -13.54612 -13.41128 -13.24219 -13.09444 -12.89106 -12.54258 -12.41980 -12.32569 -12.08111 -12.01382 -11.91559 -11.53959 -11.52023 -11.36183 -11.16004 -11.12937 -10.87575 -10.64695 -10.18214 -10.13966 -9.84371 -9.60320 -9.54444 -9.02451 -5.08781 -0.88522 0.10125 0.25475 0.28888 0.34786 0.39721 0.64415 0.76981 1.20562 1.52475 1.56368 1.84542 1.95923 2.01594 2.57925 2.83304 3.30605 3.41632 3.44615 3.61012 3.64983 3.67695 3.74517 3.75346 3.85235 3.88932 3.96814 4.10580 4.12707 4.20882 4.29916 4.32246 4.41762 4.42306 4.52429 4.56069 4.61551 4.65313 4.68243 4.77759 4.84696 4.92877 4.94480 4.98557 5.02227 5.02690 5.11078 5.13848 5.22444 5.23705 5.29723 5.33091 5.37229 5.47177 5.49054 5.63121 5.74247 5.84672 6.37209 6.44403 7.12093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.033 4.033 3 Si 0.709 3.291 4 C -0.219 4.219 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.160 4.160 8 C 0.006 3.994 9 C -0.129 4.129 10 C -0.063 4.063 11 C -0.150 4.150 12 C 0.560 3.440 13 O -0.579 6.579 14 N -0.694 5.694 15 C 0.114 3.886 16 H 0.088 0.912 17 C -0.123 4.123 18 C -0.066 4.066 19 H 0.113 0.887 20 C -0.066 4.066 21 C -0.105 4.105 22 C -0.114 4.114 23 C -0.108 4.108 24 C -0.103 4.103 25 Br -0.061 7.061 26 C -0.097 4.097 27 C -0.141 4.141 28 C -0.067 4.067 29 C -0.109 4.109 30 S 0.122 5.878 31 H 0.388 0.612 32 H 0.140 0.860 33 H -0.267 1.267 34 H -0.272 1.272 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.415 0.585 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.100 0.900 47 H 0.067 0.933 48 H 0.163 0.837 49 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 -3.284 1.327 3.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.146 4.146 3 Si 0.611 3.389 4 C -0.336 4.336 5 C -0.141 4.141 6 C -0.147 4.147 7 C -0.277 4.277 8 C 0.004 3.996 9 C -0.147 4.147 10 C -0.082 4.082 11 C -0.154 4.154 12 C 0.349 3.651 13 O -0.460 6.460 14 N -0.346 5.346 15 C 0.008 3.992 16 H 0.107 0.893 17 C -0.161 4.161 18 C -0.084 4.084 19 H 0.131 0.869 20 C -0.067 4.067 21 C -0.123 4.123 22 C -0.133 4.133 23 C -0.128 4.128 24 C -0.182 4.182 25 Br 0.024 6.976 26 C -0.117 4.117 27 C -0.180 4.180 28 C -0.086 4.086 29 C -0.129 4.129 30 S 0.390 5.610 31 H 0.237 0.763 32 H 0.157 0.843 33 H -0.192 1.192 34 H -0.197 1.197 35 H 0.172 0.828 36 H 0.184 0.816 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.254 0.746 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.164 0.836 43 H 0.167 0.833 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.118 0.882 47 H 0.086 0.914 48 H 0.180 0.820 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.596 -1.251 1.287 2.402 hybrid contribution -1.722 -1.238 -0.287 2.140 sum -0.126 -2.489 1.000 2.685 Atomic orbital electron populations 1.86602 1.17811 1.80188 1.50123 1.24454 0.83361 1.10055 0.96693 0.94480 0.91020 0.73912 0.79469 1.25094 1.06984 0.99260 1.02277 1.20187 1.01290 0.94866 0.97711 1.20636 0.97843 1.01299 0.94900 1.23179 1.06646 0.98176 0.99660 1.18468 0.95088 0.94645 0.91368 1.21033 0.98323 0.99311 0.96074 1.20948 0.96593 0.96554 0.94147 1.20007 1.03068 0.96241 0.96076 1.18460 0.79720 0.82490 0.84427 1.90789 1.44353 1.43798 1.67020 1.45463 1.52782 1.12996 1.23336 1.21929 0.95541 0.98525 0.83197 0.89344 1.23392 0.97012 0.93829 1.01886 1.21619 0.99302 0.93447 0.94060 0.86931 1.19838 0.95876 0.94759 0.96227 1.21441 0.98200 1.00025 0.92658 1.21456 0.98703 0.94077 0.99035 1.21344 0.95596 0.98000 0.97883 1.21967 1.01306 0.96168 0.98784 1.96759 1.66640 1.35466 1.98741 1.21192 0.99433 0.94364 0.96678 1.23596 1.00480 0.95114 0.98804 1.21255 0.93806 0.98655 0.94870 1.21193 1.00004 0.96395 0.95267 1.84215 1.48611 1.13258 1.14933 0.76288 0.84294 1.19215 1.19735 0.82840 0.81627 0.84850 0.85284 0.74615 0.89193 0.87727 0.83602 0.83261 0.84585 0.84271 0.88151 0.91393 0.81991 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.40 12.86 -148.98 -1.92 -2.32 16 2 C -0.03 0.06 2.96 71.23 0.21 0.27 16 3 Si 0.71 -1.06 30.96 68.60 2.12 1.06 16 4 C -0.22 0.26 5.73 24.66 0.14 0.41 16 5 C -0.11 0.21 10.00 21.14 0.21 0.42 16 6 C -0.12 0.33 9.64 21.42 0.21 0.53 16 7 C -0.16 0.09 6.37 23.98 0.15 0.25 16 8 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 9 C -0.13 -0.16 9.54 22.26 0.21 0.06 16 10 C -0.06 -0.20 9.53 22.26 0.21 0.01 16 11 C -0.15 -0.18 5.88 -20.05 -0.12 -0.29 16 12 C 0.56 2.26 7.76 86.70 0.67 2.93 16 13 O -0.58 -7.48 15.93 -4.04 -0.06 -7.55 16 14 N -0.69 2.27 5.21 -442.88 -2.31 -0.03 16 15 C 0.11 -0.36 4.33 45.58 0.20 -0.16 16 16 H 0.09 0.13 7.46 -2.39 -0.02 0.11 16 17 C -0.12 0.90 7.29 31.12 0.23 1.13 16 18 C -0.07 0.44 3.85 -11.01 -0.04 0.40 16 19 H 0.11 -1.04 8.09 -2.39 -0.02 -1.06 16 20 C -0.07 0.22 5.29 -19.87 -0.11 0.11 16 21 C -0.11 0.38 8.53 22.27 0.19 0.57 16 22 C -0.11 0.30 10.05 22.27 0.22 0.52 16 23 C -0.11 -0.01 9.79 22.29 0.22 0.21 16 24 C -0.10 -0.15 6.22 22.31 0.14 -0.01 16 25 Br -0.06 -0.15 33.70 -20.37 -0.69 -0.84 16 26 C -0.10 0.09 9.45 22.29 0.21 0.30 16 27 C -0.14 0.61 7.27 31.18 0.23 0.84 16 28 C -0.07 0.34 9.48 22.26 0.21 0.55 16 29 C -0.11 0.50 9.48 22.26 0.21 0.71 16 30 S 0.12 -0.08 19.46 -56.49 -1.10 -1.17 16 31 H 0.39 -1.69 8.70 -74.06 -0.64 -2.34 16 32 H 0.14 -0.59 7.96 -2.39 -0.02 -0.61 16 33 H -0.27 -0.72 7.11 99.48 0.71 -0.01 16 34 H -0.27 -1.26 7.11 99.48 0.71 -0.56 16 35 H 0.15 -0.57 8.06 -2.91 -0.02 -0.59 16 36 H 0.17 -1.29 6.88 -2.91 -0.02 -1.31 16 37 H 0.13 -0.06 7.26 -2.91 -0.02 -0.08 16 38 H 0.13 0.62 7.64 -2.91 -0.02 0.60 16 39 H 0.42 -4.04 6.71 -92.71 -0.62 -4.66 16 40 H 0.09 -0.80 8.14 -2.38 -0.02 -0.82 16 41 H 0.10 -0.80 7.62 -2.39 -0.02 -0.82 16 42 H 0.15 -1.06 6.73 -2.91 -0.02 -1.08 16 43 H 0.15 -0.98 8.06 -2.91 -0.02 -1.01 16 44 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 45 H 0.14 -0.47 8.05 -2.91 -0.02 -0.49 16 46 H 0.10 -0.50 6.41 -2.39 -0.02 -0.52 16 47 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 48 H 0.16 -2.02 6.38 -2.91 -0.02 -2.04 16 49 H 0.16 -1.60 6.74 -2.91 -0.02 -1.62 16 Total: 0.00 -20.06 439.73 -0.45 -20.51 By element: Atomic # 1 Polarization: -19.10 SS G_CDS: -0.20 Total: -19.30 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 3.69 Total: 9.64 kcal Atomic # 7 Polarization: 2.27 SS G_CDS: -2.31 Total: -0.03 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -1.98 Total: -9.87 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.12 Total: 1.06 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.10 Total: -1.17 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.69 Total: -0.84 kcal Total: -20.06 -0.45 -20.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.909 kcal (2) G-P(sol) polarization free energy of solvation -20.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds