Wall clock time and date at job start Sun Mar 7 2021 01:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00265 * 2 1 4 4 C 1.39050 * 111.00065 * 123.95711 * 2 1 3 5 5 C 1.39195 * 119.93428 * 120.00048 * 4 2 1 6 6 C 1.50703 * 119.96365 * 359.71747 * 5 4 2 7 7 O 1.42905 * 109.46947 * 75.00200 * 6 5 4 8 8 Si 1.86297 * 109.46999 * 195.00097 * 6 5 4 9 9 C 1.37625 * 120.07150 * 179.69748 * 5 4 2 10 10 C 1.39781 * 119.92991 * 0.02562 * 9 5 4 11 11 C 1.47517 * 120.06767 * 180.02562 * 10 9 5 12 12 O 1.21596 * 120.00429 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99872 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99992 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.85050 * 336.19413 * 14 13 11 16 16 C 1.53781 * 113.61494 * 107.50659 * 14 13 11 17 17 C 1.53777 * 87.08414 * 89.11654 * 16 14 13 18 18 H 1.09007 * 113.68968 * 270.86979 * 17 16 14 19 19 C 1.50697 * 113.61826 * 139.98404 * 17 16 14 20 20 C 1.38201 * 119.99255 * 322.22122 * 19 17 16 21 21 C 1.38345 * 119.98875 * 179.76788 * 20 19 17 22 22 Br 1.89099 * 120.01004 * 180.25576 * 21 20 19 23 23 C 1.38307 * 119.98138 * 0.48680 * 21 20 19 24 24 C 1.38241 * 119.98590 * 359.76793 * 23 21 20 25 25 C 1.38213 * 120.01370 * 0.02562 * 24 23 21 26 26 C 1.53780 * 87.08145 * 25.43102 * 17 16 14 27 27 C 1.39820 * 119.86255 * 359.97438 * 10 9 5 28 28 C 1.37594 * 119.92851 * 359.97438 * 27 10 9 29 29 H 1.08998 * 109.46985 * 296.04477 * 1 2 3 30 30 H 1.08993 * 109.47345 * 56.04587 * 1 2 3 31 31 H 1.09001 * 109.47304 * 176.04837 * 1 2 3 32 32 H 1.09000 * 109.47230 * 183.95875 * 3 2 1 33 33 H 1.09004 * 109.46886 * 303.95536 * 3 2 1 34 34 H 1.09001 * 109.46893 * 63.95092 * 3 2 1 35 35 H 1.08996 * 109.47066 * 315.00388 * 6 5 4 36 36 H 0.96695 * 113.99927 * 300.00053 * 7 6 5 37 37 H 1.48496 * 110.00088 * 298.68466 * 8 6 5 38 38 H 1.48508 * 109.99927 * 60.00276 * 8 6 5 39 39 H 1.08001 * 120.04151 * 179.97438 * 9 5 4 40 40 H 0.97002 * 120.00049 * 0.02562 * 13 11 10 41 41 H 1.08999 * 113.61259 * 203.66546 * 16 14 13 42 42 H 1.08997 * 113.61201 * 334.56105 * 16 14 13 43 43 H 1.08000 * 120.00302 * 0.02562 * 20 19 17 44 44 H 1.07995 * 120.00374 * 179.78737 * 23 21 20 45 45 H 1.08004 * 119.99102 * 180.02562 * 24 23 21 46 46 H 1.07995 * 119.99426 * 179.97438 * 25 24 23 47 47 H 1.08998 * 113.61306 * 220.02041 * 26 17 16 48 48 H 1.08998 * 113.69137 * 89.13072 * 26 17 16 49 49 H 1.07989 * 120.03487 * 180.02562 * 27 10 9 50 50 H 1.07996 * 119.96404 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9673 -0.7251 1.0767 5 6 2.7793 -1.8331 0.8518 6 6 3.1118 -2.2487 -0.5581 7 8 4.0782 -1.3489 -1.1046 8 14 3.8080 -3.9767 -0.5481 9 6 3.2791 -2.5491 1.9156 10 6 2.9702 -2.1629 3.2230 11 6 3.5047 -2.9279 4.3654 12 8 4.2146 -3.8957 4.1704 13 7 3.2064 -2.5540 5.6255 14 6 3.7377 -3.3133 6.7601 15 1 3.9911 -4.3411 6.5001 16 6 4.8492 -2.5778 7.5272 17 6 3.7367 -1.9619 8.3919 18 1 3.3403 -1.0272 7.9950 19 6 4.0877 -1.8742 9.8548 20 6 4.8070 -2.8904 10.4547 21 6 5.1334 -2.8076 11.7966 22 35 6.1238 -4.1942 12.6164 23 6 4.7309 -1.7125 12.5394 24 6 4.0069 -0.6991 11.9396 25 6 3.6848 -0.7802 10.5980 26 6 2.8863 -3.1925 8.0350 27 6 2.1542 -1.0495 3.4456 28 6 1.6585 -0.3372 2.3779 29 1 -0.3633 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0828 1.3432 -0.0709 33 1 1.5898 1.9163 -0.8525 34 1 1.7044 1.8723 0.9233 35 1 2.2079 -2.2247 -1.1667 36 1 3.7828 -0.4289 -1.1405 37 1 5.0582 -4.0160 0.2523 38 1 2.8125 -4.9222 0.0180 39 1 3.9088 -3.4089 1.7405 40 1 2.6398 -1.7822 5.7811 41 1 5.5130 -3.2435 8.0789 42 1 5.3872 -1.8477 6.9227 43 1 5.1179 -3.7470 9.8751 44 1 4.9825 -1.6491 13.5877 45 1 3.6930 0.1563 12.5195 46 1 3.1188 0.0115 10.1299 47 1 1.8396 -2.9584 7.8406 48 1 3.0123 -4.0269 8.7249 49 1 1.9141 -0.7485 4.4545 50 1 1.0286 0.5231 2.5492 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_13422196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:40:08 Heat of formation + Delta-G solvation = 37.574722 kcal Electronic energy + Delta-G solvation = -32455.237524 eV Core-core repulsion = 28075.450741 eV Total energy + Delta-G solvation = -4379.786782 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.088 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.04313 -41.36509 -40.38291 -38.96130 -37.71059 -37.37407 -34.96770 -33.39899 -32.88601 -31.96627 -31.18930 -30.26953 -28.57713 -26.97010 -26.92429 -26.79679 -25.71756 -23.79026 -23.33438 -23.04881 -22.50486 -21.39170 -20.31094 -19.24635 -18.22404 -18.08036 -17.80512 -17.46929 -16.85893 -16.48172 -16.46042 -16.30564 -16.05161 -15.98472 -15.78780 -15.34434 -15.19894 -15.07230 -14.83026 -14.61665 -14.52768 -14.29818 -14.11633 -13.90952 -13.68350 -13.54896 -13.47137 -13.19023 -13.05762 -12.97415 -12.74602 -12.65829 -12.41059 -12.36473 -12.08688 -11.95007 -11.60330 -11.46463 -11.37065 -11.33591 -11.25477 -11.02356 -10.36387 -10.23930 -9.91485 -9.85896 -9.65192 -9.64192 -4.93779 -0.54510 0.00688 0.07786 0.23664 0.61057 1.30131 1.47385 1.56975 1.83574 1.91341 2.47371 2.54564 2.67865 3.33935 3.41454 3.45804 3.55332 3.56574 3.61918 3.79145 3.83703 3.88113 3.96549 4.01905 4.03787 4.10898 4.18497 4.25160 4.36111 4.37039 4.39152 4.42249 4.50189 4.57481 4.59810 4.61858 4.66862 4.67720 4.75379 4.89117 4.89719 4.91721 4.94191 4.98379 4.98727 4.99996 5.04473 5.10753 5.18696 5.31747 5.38909 5.42963 5.54547 5.76167 5.81880 6.14489 6.29357 6.65200 6.96472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.524 5.524 3 C 0.022 3.978 4 C 0.133 3.867 5 C -0.113 4.113 6 C -0.062 4.062 7 O -0.544 6.544 8 Si 0.794 3.206 9 C -0.082 4.082 10 C -0.149 4.149 11 C 0.558 3.442 12 O -0.583 6.583 13 N -0.688 5.688 14 C 0.111 3.889 15 H 0.082 0.918 16 C -0.145 4.145 17 C -0.060 4.060 18 H 0.124 0.876 19 C -0.069 4.069 20 C -0.100 4.100 21 C -0.103 4.103 22 Br -0.064 7.064 23 C -0.108 4.108 24 C -0.114 4.114 25 C -0.100 4.100 26 C -0.123 4.123 27 C -0.056 4.056 28 C -0.147 4.147 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.097 0.903 36 H 0.374 0.626 37 H -0.302 1.302 38 H -0.275 1.275 39 H 0.110 0.890 40 H 0.417 0.583 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.153 0.847 46 H 0.154 0.846 47 H 0.095 0.905 48 H 0.098 0.902 49 H 0.167 0.833 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.827 8.801 -0.483 11.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.245 5.245 3 C -0.124 4.124 4 C 0.039 3.961 5 C -0.114 4.114 6 C -0.172 4.172 7 O -0.351 6.351 8 Si 0.699 3.301 9 C -0.101 4.101 10 C -0.152 4.152 11 C 0.347 3.653 12 O -0.464 6.464 13 N -0.339 5.339 14 C 0.006 3.994 15 H 0.101 0.899 16 C -0.184 4.184 17 C -0.078 4.078 18 H 0.142 0.858 19 C -0.070 4.070 20 C -0.119 4.119 21 C -0.182 4.182 22 Br 0.022 6.978 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.118 4.118 26 C -0.161 4.161 27 C -0.075 4.075 28 C -0.167 4.167 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.115 0.885 36 H 0.223 0.777 37 H -0.231 1.231 38 H -0.201 1.201 39 H 0.128 0.872 40 H 0.257 0.743 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.150 0.850 44 H 0.155 0.845 45 H 0.171 0.829 46 H 0.172 0.828 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.184 0.816 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.261 6.172 -0.316 8.797 hybrid contribution -0.829 1.673 1.677 2.509 sum -7.090 7.844 1.360 10.661 Atomic orbital electron populations 1.22551 0.84019 1.03034 1.02541 1.59440 1.10016 1.15292 1.39789 1.22613 1.01058 0.86029 1.02657 1.18941 0.93939 0.93003 0.90263 1.20322 0.98843 0.96228 0.96033 1.25024 0.97947 1.04275 0.89992 1.86689 1.42137 1.21905 1.84360 0.92846 0.76669 0.73222 0.87374 1.21061 0.97831 0.98656 0.92568 1.19865 1.03559 0.99441 0.92373 1.18448 0.79548 0.83342 0.83983 1.90798 1.39758 1.29835 1.86038 1.45379 1.51914 1.32846 1.03809 1.21909 0.96075 0.95996 0.85454 0.89945 1.23563 0.96757 1.00149 0.97912 1.21621 0.96810 0.99746 0.89653 0.85795 1.19831 0.97299 0.93973 0.95910 1.21081 0.98374 0.99858 0.92612 1.21939 1.03917 0.96095 0.96290 1.96763 1.72058 1.47728 1.81268 1.21364 0.97923 0.92819 1.00621 1.21501 0.97359 0.98796 0.95567 1.21544 0.98490 0.97818 0.93991 1.23373 0.99765 0.98286 0.94655 1.21482 0.93154 0.91632 1.01214 1.21929 1.01374 1.01428 0.91990 0.93687 0.89055 0.91651 0.91144 0.88856 0.93822 0.88491 0.77659 1.23091 1.20122 0.87236 0.74333 0.88981 0.91190 0.84994 0.84514 0.82918 0.82830 0.88625 0.88398 0.81590 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.16 9.34 127.69 1.19 1.03 16 2 N -0.52 2.08 3.69 -745.11 -2.75 -0.67 16 3 C 0.02 -0.16 9.09 127.69 1.16 1.00 16 4 C 0.13 -0.05 4.66 38.47 0.18 0.12 16 5 C -0.11 -0.57 5.28 -19.78 -0.10 -0.67 16 6 C -0.06 -0.25 2.29 71.24 0.16 -0.08 16 7 O -0.54 -2.57 12.65 -148.98 -1.89 -4.46 16 8 Si 0.79 4.66 30.40 68.60 2.09 6.75 16 9 C -0.08 -0.77 8.19 22.50 0.18 -0.58 16 10 C -0.15 -0.75 5.88 -20.07 -0.12 -0.86 16 11 C 0.56 4.40 7.76 86.69 0.67 5.07 16 12 O -0.58 -10.55 15.94 -4.02 -0.06 -10.61 16 13 N -0.69 0.71 5.21 -443.21 -2.31 -1.60 16 14 C 0.11 -0.04 4.32 45.52 0.20 0.16 16 15 H 0.08 0.44 7.46 -2.39 -0.02 0.42 16 16 C -0.15 0.23 7.25 31.12 0.23 0.46 16 17 C -0.06 0.36 3.86 -11.02 -0.04 0.32 16 18 H 0.12 -1.29 8.09 -2.38 -0.02 -1.31 16 19 C -0.07 0.19 5.29 -19.87 -0.11 0.08 16 20 C -0.10 -0.07 8.34 22.29 0.19 0.12 16 21 C -0.10 -0.26 6.22 22.31 0.14 -0.13 16 22 Br -0.06 -0.26 33.70 -20.37 -0.69 -0.95 16 23 C -0.11 -0.03 9.79 22.29 0.22 0.18 16 24 C -0.11 0.36 10.05 22.26 0.22 0.58 16 25 C -0.10 0.44 9.71 22.27 0.22 0.66 16 26 C -0.12 0.67 7.29 31.12 0.23 0.90 16 27 C -0.06 0.20 9.53 22.50 0.21 0.41 16 28 C -0.15 0.62 8.53 22.36 0.19 0.81 16 29 H 0.04 -0.38 7.11 -2.39 -0.02 -0.40 16 30 H 0.09 -0.79 8.12 -2.39 -0.02 -0.81 16 31 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.07 -0.44 7.43 -2.39 -0.02 -0.46 16 33 H 0.09 -0.88 8.12 -2.38 -0.02 -0.89 16 34 H 0.04 -0.37 7.30 -2.39 -0.02 -0.39 16 35 H 0.10 0.08 7.78 -2.39 -0.02 0.06 16 36 H 0.37 -0.03 7.48 -74.06 -0.55 -0.59 16 37 H -0.30 -4.42 6.81 99.48 0.68 -3.74 16 38 H -0.27 -2.66 7.11 99.48 0.71 -1.95 16 39 H 0.11 1.62 4.50 -2.91 -0.01 1.61 16 40 H 0.42 -3.65 6.72 -92.71 -0.62 -4.27 16 41 H 0.09 -0.05 6.32 -2.39 -0.02 -0.06 16 42 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.13 0.01 6.67 -2.91 -0.02 -0.01 16 44 H 0.14 -0.19 8.06 -2.91 -0.02 -0.22 16 45 H 0.15 -1.17 8.06 -2.91 -0.02 -1.20 16 46 H 0.15 -1.51 8.05 -2.91 -0.02 -1.53 16 47 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 48 H 0.10 -0.43 7.72 -2.39 -0.02 -0.45 16 49 H 0.17 -1.96 6.39 -2.92 -0.02 -1.98 16 50 H 0.16 -1.53 6.99 -2.91 -0.02 -1.55 16 Total: 0.00 -22.25 420.98 -0.57 -22.81 By element: Atomic # 1 Polarization: -20.68 SS G_CDS: -0.17 Total: -20.85 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 5.22 Total: 9.58 kcal Atomic # 7 Polarization: 2.80 SS G_CDS: -5.06 Total: -2.27 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.95 Total: -15.07 kcal Atomic # 14 Polarization: 4.66 SS G_CDS: 2.09 Total: 6.75 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -0.69 Total: -0.95 kcal Total: -22.25 -0.57 -22.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_13422196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.387 kcal (2) G-P(sol) polarization free energy of solvation -22.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds