Wall clock time and date at job start Sun Mar 7 2021 01:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86304 * 109.46983 * 2 1 4 4 C 1.50696 * 109.47605 * 120.00192 * 2 1 3 5 5 C 1.32699 * 124.68241 * 64.99768 * 4 2 1 6 6 C 1.44507 * 113.09770 * 180.02562 * 5 4 2 7 7 C 1.47049 * 123.49081 * 179.97438 * 6 5 4 8 8 O 1.21650 * 119.99811 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00046 * 0.02562 * 7 6 5 10 10 C 1.46491 * 120.00089 * 179.97438 * 9 7 6 11 11 H 1.08999 * 112.85197 * 336.19844 * 10 9 7 12 12 C 1.53960 * 113.61572 * 107.46412 * 10 9 7 13 13 C 1.53784 * 87.01770 * 89.20182 * 12 10 9 14 14 H 1.09008 * 113.61227 * 270.76782 * 13 12 10 15 15 C 1.50697 * 113.61345 * 139.95489 * 13 12 10 16 16 C 1.38224 * 119.99246 * 140.85895 * 15 13 12 17 17 C 1.38263 * 120.01964 * 179.74186 * 16 15 13 18 18 C 1.38204 * 120.00696 * 0.23940 * 17 16 15 19 19 C 1.38342 * 119.98946 * 0.02562 * 18 17 16 20 20 Br 1.89100 * 120.00663 * 179.97438 * 19 18 17 21 21 C 1.38239 * 119.99604 * 321.11741 * 15 13 12 22 22 C 1.53781 * 87.17287 * 25.36274 * 13 12 10 23 23 C 1.36227 * 113.01662 * 0.25030 * 6 5 4 24 24 Cl 1.73595 * 124.60540 * 179.75126 * 23 6 5 25 25 S 1.70447 * 110.78725 * 359.62189 * 23 6 5 26 26 H 0.96700 * 113.99374 * 299.99677 * 1 2 3 27 27 H 1.09000 * 109.47168 * 240.00579 * 2 1 3 28 28 H 1.48502 * 109.99960 * 178.68286 * 3 2 1 29 29 H 1.48494 * 110.00440 * 300.00317 * 3 2 1 30 30 H 1.07995 * 123.45153 * 0.06284 * 5 4 2 31 31 H 0.97006 * 119.99524 * 359.97438 * 9 7 6 32 32 H 1.09003 * 113.66576 * 334.67501 * 12 10 9 33 33 H 1.09000 * 113.61751 * 203.72131 * 12 10 9 34 34 H 1.08002 * 119.99433 * 0.02787 * 16 15 13 35 35 H 1.08000 * 120.00028 * 180.25940 * 17 16 15 36 36 H 1.08007 * 119.99954 * 179.97438 * 18 17 16 37 37 H 1.07993 * 120.00355 * 0.02562 * 21 15 13 38 38 H 1.08994 * 113.61228 * 89.15853 * 22 13 12 39 39 H 1.09004 * 113.61059 * 220.06002 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7484 -1.9997 1.4855 6 6 2.3355 -2.4187 2.7377 7 6 2.2683 -3.7976 3.2442 8 8 2.7852 -4.0805 4.3085 9 7 1.6340 -4.7479 2.5294 10 6 1.5675 -6.1217 3.0337 11 1 2.3701 -6.3550 3.7334 12 6 0.1705 -6.5264 3.5387 13 6 -0.1281 -6.9845 2.1013 14 1 -0.5440 -6.1990 1.4702 15 6 -0.9109 -8.2701 2.0279 16 6 -1.9014 -8.4225 1.0758 17 6 -2.6164 -9.6038 1.0045 18 6 -2.3443 -10.6308 1.8884 19 6 -1.3569 -10.4766 2.8449 20 35 -0.9847 -11.8812 4.0549 21 6 -0.6421 -9.2947 2.9161 22 6 1.3880 -7.1757 1.9285 23 6 2.9525 -1.4027 3.4031 24 17 3.7495 -1.5689 4.9363 25 16 2.8387 0.0532 2.5240 26 1 -0.3932 0.4417 0.7651 27 1 1.7923 -0.5137 -0.8900 28 1 3.5346 1.7704 0.0321 29 1 1.5614 2.4680 -1.2084 30 1 1.2157 -2.6675 0.8248 31 1 1.2215 -4.5222 1.6809 32 1 -0.4386 -5.6828 3.8635 33 1 0.1869 -7.3414 4.2622 34 1 -2.1138 -7.6204 0.3845 35 1 -3.3873 -9.7241 0.2578 36 1 -2.9032 -11.5533 1.8328 37 1 0.1287 -9.1737 3.6628 38 1 1.7378 -8.1686 2.2110 39 1 1.7602 -6.8556 0.9552 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14189268_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:40:21 Heat of formation + Delta-G solvation = 20.818524 kcal Electronic energy + Delta-G solvation = -26705.499969 eV Core-core repulsion = 22586.377806 eV Total energy + Delta-G solvation = -4119.122164 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 427.964 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.73083 -40.62897 -39.31553 -38.66333 -37.87297 -37.01570 -34.61381 -33.33254 -31.98174 -31.60340 -30.25437 -27.20595 -26.84718 -26.79494 -25.35859 -23.54850 -22.51845 -22.34475 -20.88963 -20.23929 -19.47480 -18.24914 -18.03321 -17.74881 -17.05233 -16.63025 -16.50664 -16.24909 -15.96028 -15.79384 -15.76893 -15.22669 -14.97820 -14.70512 -14.60756 -14.40117 -14.34414 -14.29695 -14.14849 -13.60499 -13.42424 -13.06594 -12.96015 -12.58138 -12.46841 -12.41559 -12.11404 -12.05252 -12.00323 -11.93319 -11.59430 -11.35816 -11.20502 -10.90003 -10.70238 -10.16374 -9.95042 -9.88866 -9.72299 -9.65389 -5.33917 -0.63601 -0.24281 0.05802 0.20502 0.39291 0.64887 0.65421 1.00048 1.06114 1.42097 1.74340 2.07913 2.22371 2.50889 3.10714 3.31395 3.35598 3.50626 3.57686 3.72083 3.77885 3.82019 3.84164 3.95326 4.06843 4.18297 4.18720 4.30972 4.32739 4.49174 4.58248 4.61701 4.63010 4.75219 4.82892 4.86300 4.86808 4.91605 5.02069 5.15821 5.27652 5.42691 5.53502 5.74830 6.28058 6.40029 7.16929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.024 4.024 3 Si 0.651 3.349 4 C -0.236 4.236 5 C -0.070 4.070 6 C -0.160 4.160 7 C 0.579 3.421 8 O -0.515 6.515 9 N -0.707 5.707 10 C 0.122 3.878 11 H 0.109 0.891 12 C -0.144 4.144 13 C -0.074 4.074 14 H 0.101 0.899 15 C -0.065 4.065 16 C -0.101 4.101 17 C -0.110 4.110 18 C -0.096 4.096 19 C -0.087 4.087 20 Br -0.049 7.049 21 C -0.088 4.088 22 C -0.136 4.136 23 C -0.113 4.113 24 Cl 0.028 6.972 25 S 0.238 5.762 26 H 0.383 0.617 27 H 0.128 0.872 28 H -0.234 1.234 29 H -0.228 1.228 30 H 0.156 0.844 31 H 0.400 0.600 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.099 0.901 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.533 3.660 -3.770 5.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.138 4.138 3 Si 0.550 3.450 4 C -0.353 4.353 5 C -0.100 4.100 6 C -0.179 4.179 7 C 0.364 3.636 8 O -0.391 6.391 9 N -0.359 5.359 10 C 0.017 3.983 11 H 0.126 0.874 12 C -0.182 4.182 13 C -0.092 4.092 14 H 0.119 0.881 15 C -0.066 4.066 16 C -0.119 4.119 17 C -0.129 4.129 18 C -0.115 4.115 19 C -0.167 4.167 20 Br 0.036 6.964 21 C -0.108 4.108 22 C -0.174 4.174 23 C -0.260 4.260 24 Cl 0.057 6.943 25 S 0.502 5.498 26 H 0.230 0.770 27 H 0.145 0.855 28 H -0.158 1.158 29 H -0.151 1.151 30 H 0.174 0.826 31 H 0.235 0.765 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.118 0.882 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.835 4.669 -3.112 5.673 hybrid contribution -0.767 -1.790 -0.901 2.146 sum -1.602 2.880 -4.013 5.193 Atomic orbital electron populations 1.86540 1.16320 1.81649 1.49279 1.24425 0.85377 1.09140 0.94823 0.95082 0.82410 0.77255 0.90285 1.24797 1.08912 0.98731 1.02874 1.20990 0.99059 0.95026 0.94895 1.20201 1.06107 0.94723 0.96869 1.17386 0.78301 0.83671 0.84202 1.90886 1.45308 1.81547 1.21320 1.45473 1.57394 1.08509 1.24522 1.21875 0.98795 0.80639 0.97038 0.87350 1.23612 0.96864 1.01947 0.95819 1.21628 0.94592 0.94389 0.98592 0.88122 1.19688 0.96478 0.95108 0.95342 1.21227 0.95054 0.97786 0.97853 1.21209 0.99826 0.93044 0.98852 1.21173 0.96355 0.99888 0.94118 1.21826 1.01413 0.94694 0.98718 1.96789 1.94804 1.45691 1.59073 1.20967 0.99253 0.91449 0.99145 1.23442 0.94610 0.99816 0.99511 1.25540 1.03799 1.00514 0.96171 1.98446 1.76139 1.97305 1.22422 1.83302 1.50671 1.06457 1.09333 0.76953 0.85489 1.15833 1.15123 0.82625 0.76456 0.90421 0.88579 0.85361 0.84962 0.84965 0.84874 0.88213 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.31 12.88 -35.23 -0.45 0.86 16 2 C -0.02 0.07 2.94 36.00 0.11 0.17 16 3 Si 0.65 -1.86 30.92 -169.99 -5.26 -7.11 16 4 C -0.24 0.48 5.65 -36.20 -0.20 0.28 16 5 C -0.07 0.12 9.75 -39.00 -0.38 -0.26 16 6 C -0.16 -0.13 5.98 -104.58 -0.63 -0.76 16 7 C 0.58 1.24 7.79 -12.69 -0.10 1.14 16 8 O -0.51 -2.90 14.51 5.23 0.08 -2.82 16 9 N -0.71 0.65 5.24 -54.12 -0.28 0.36 16 10 C 0.12 -0.11 4.33 -67.03 -0.29 -0.40 16 11 H 0.11 0.09 7.46 -51.93 -0.39 -0.29 16 12 C -0.14 0.19 7.27 -25.82 -0.19 0.00 16 13 C -0.07 0.17 3.86 -90.96 -0.35 -0.18 16 14 H 0.10 -0.34 8.09 -51.92 -0.42 -0.76 16 15 C -0.07 0.05 5.29 -104.63 -0.55 -0.50 16 16 C -0.10 0.11 9.71 -39.58 -0.38 -0.28 16 17 C -0.11 0.08 10.05 -39.58 -0.40 -0.32 16 18 C -0.10 -0.03 9.79 -39.56 -0.39 -0.41 16 19 C -0.09 -0.09 6.22 -39.52 -0.25 -0.33 16 20 Br -0.05 -0.07 33.70 -68.01 -2.29 -2.36 16 21 C -0.09 -0.01 8.29 -39.56 -0.33 -0.34 16 22 C -0.14 0.32 7.29 -25.92 -0.19 0.13 16 23 C -0.11 -0.15 6.87 30.01 0.21 0.06 16 24 Cl 0.03 0.08 27.20 -51.86 -1.41 -1.33 16 25 S 0.24 -0.34 20.19 -107.50 -2.17 -2.51 16 26 H 0.38 -2.30 8.70 45.56 0.40 -1.90 16 27 H 0.13 -0.38 7.96 -51.93 -0.41 -0.79 16 28 H -0.23 0.17 7.11 56.52 0.40 0.57 16 29 H -0.23 0.02 7.11 56.52 0.40 0.42 16 30 H 0.16 -0.59 7.10 -52.49 -0.37 -0.96 16 31 H 0.40 -1.36 7.25 -40.82 -0.30 -1.66 16 32 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 33 H 0.10 -0.12 6.38 -51.93 -0.33 -0.45 16 34 H 0.13 -0.37 8.05 -52.49 -0.42 -0.79 16 35 H 0.13 -0.35 8.06 -52.49 -0.42 -0.77 16 36 H 0.13 -0.10 8.06 -52.48 -0.42 -0.53 16 37 H 0.13 -0.09 6.72 -52.49 -0.35 -0.45 16 38 H 0.10 -0.22 7.66 -51.93 -0.40 -0.62 16 39 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 LS Contribution 377.69 15.07 5.69 5.69 Total: 0.00 -7.03 377.69 -14.30 -21.32 By element: Atomic # 1 Polarization: -6.21 SS G_CDS: -3.89 Total: -10.10 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -4.31 Total: -2.00 kcal Atomic # 7 Polarization: 0.65 SS G_CDS: -0.28 Total: 0.36 kcal Atomic # 8 Polarization: -1.59 SS G_CDS: -0.38 Total: -1.96 kcal Atomic # 14 Polarization: -1.86 SS G_CDS: -5.26 Total: -7.11 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.17 Total: -2.51 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -1.41 Total: -1.33 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -2.29 Total: -2.36 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -7.03 -14.30 -21.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.140 kcal (2) G-P(sol) polarization free energy of solvation -7.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds