Wall clock time and date at job start Sun Mar 7 2021 01:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86304 * 109.46983 * 2 1 4 4 C 1.50696 * 109.47605 * 120.00192 * 2 1 3 5 5 C 1.32699 * 124.68241 * 64.99768 * 4 2 1 6 6 C 1.44507 * 113.09770 * 180.02562 * 5 4 2 7 7 C 1.47049 * 123.49081 * 179.97438 * 6 5 4 8 8 O 1.21650 * 119.99811 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00046 * 0.02562 * 7 6 5 10 10 C 1.46491 * 120.00089 * 179.97438 * 9 7 6 11 11 H 1.08999 * 112.85197 * 336.19844 * 10 9 7 12 12 C 1.53960 * 113.61572 * 107.46412 * 10 9 7 13 13 C 1.53784 * 87.01770 * 89.20182 * 12 10 9 14 14 H 1.09008 * 113.61227 * 270.76782 * 13 12 10 15 15 C 1.50697 * 113.61345 * 139.95489 * 13 12 10 16 16 C 1.38224 * 119.99246 * 140.85895 * 15 13 12 17 17 C 1.38263 * 120.01964 * 179.74186 * 16 15 13 18 18 C 1.38204 * 120.00696 * 0.23940 * 17 16 15 19 19 C 1.38342 * 119.98946 * 0.02562 * 18 17 16 20 20 Br 1.89100 * 120.00663 * 179.97438 * 19 18 17 21 21 C 1.38239 * 119.99604 * 321.11741 * 15 13 12 22 22 C 1.53781 * 87.17287 * 25.36274 * 13 12 10 23 23 C 1.36227 * 113.01662 * 0.25030 * 6 5 4 24 24 Cl 1.73595 * 124.60540 * 179.75126 * 23 6 5 25 25 S 1.70447 * 110.78725 * 359.62189 * 23 6 5 26 26 H 0.96700 * 113.99374 * 299.99677 * 1 2 3 27 27 H 1.09000 * 109.47168 * 240.00579 * 2 1 3 28 28 H 1.48502 * 109.99960 * 178.68286 * 3 2 1 29 29 H 1.48494 * 110.00440 * 300.00317 * 3 2 1 30 30 H 1.07995 * 123.45153 * 0.06284 * 5 4 2 31 31 H 0.97006 * 119.99524 * 359.97438 * 9 7 6 32 32 H 1.09003 * 113.66576 * 334.67501 * 12 10 9 33 33 H 1.09000 * 113.61751 * 203.72131 * 12 10 9 34 34 H 1.08002 * 119.99433 * 0.02787 * 16 15 13 35 35 H 1.08000 * 120.00028 * 180.25940 * 17 16 15 36 36 H 1.08007 * 119.99954 * 179.97438 * 18 17 16 37 37 H 1.07993 * 120.00355 * 0.02562 * 21 15 13 38 38 H 1.08994 * 113.61228 * 89.15853 * 22 13 12 39 39 H 1.09004 * 113.61059 * 220.06002 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7484 -1.9997 1.4855 6 6 2.3355 -2.4187 2.7377 7 6 2.2683 -3.7976 3.2442 8 8 2.7852 -4.0805 4.3085 9 7 1.6340 -4.7479 2.5294 10 6 1.5675 -6.1217 3.0337 11 1 2.3701 -6.3550 3.7334 12 6 0.1705 -6.5264 3.5387 13 6 -0.1281 -6.9845 2.1013 14 1 -0.5440 -6.1990 1.4702 15 6 -0.9109 -8.2701 2.0279 16 6 -1.9014 -8.4225 1.0758 17 6 -2.6164 -9.6038 1.0045 18 6 -2.3443 -10.6308 1.8884 19 6 -1.3569 -10.4766 2.8449 20 35 -0.9847 -11.8812 4.0549 21 6 -0.6421 -9.2947 2.9161 22 6 1.3880 -7.1757 1.9285 23 6 2.9525 -1.4027 3.4031 24 17 3.7495 -1.5689 4.9363 25 16 2.8387 0.0532 2.5240 26 1 -0.3932 0.4417 0.7651 27 1 1.7923 -0.5137 -0.8900 28 1 3.5346 1.7704 0.0321 29 1 1.5614 2.4680 -1.2084 30 1 1.2157 -2.6675 0.8248 31 1 1.2215 -4.5222 1.6809 32 1 -0.4386 -5.6828 3.8635 33 1 0.1869 -7.3414 4.2622 34 1 -2.1138 -7.6204 0.3845 35 1 -3.3873 -9.7241 0.2578 36 1 -2.9032 -11.5533 1.8328 37 1 0.1287 -9.1737 3.6628 38 1 1.7378 -8.1686 2.2110 39 1 1.7602 -6.8556 0.9552 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:40:20 Heat of formation + Delta-G solvation = 26.372603 kcal Electronic energy + Delta-G solvation = -26705.259126 eV Core-core repulsion = 22586.377806 eV Total energy + Delta-G solvation = -4118.881321 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 427.964 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.69625 -40.62126 -39.21689 -38.59436 -37.93391 -36.93393 -34.63917 -33.30633 -31.91350 -31.51241 -30.23974 -27.14517 -26.72466 -26.67277 -25.30272 -23.47282 -22.44692 -22.27829 -20.85389 -20.16295 -19.42172 -18.15879 -17.89161 -17.67850 -17.00674 -16.54276 -16.43947 -16.16128 -15.94570 -15.75952 -15.67994 -15.16002 -14.88308 -14.64133 -14.54066 -14.37031 -14.32821 -14.24356 -14.05546 -13.48450 -13.39943 -12.95649 -12.87010 -12.59404 -12.37545 -12.36717 -12.15700 -12.01886 -11.88952 -11.85095 -11.54543 -11.32766 -11.19565 -10.97946 -10.56853 -10.19185 -9.89378 -9.83355 -9.64453 -9.60882 -5.13306 -0.62818 -0.18576 0.11181 0.27291 0.48818 0.63976 0.72572 1.04902 1.19745 1.58458 1.90909 2.09754 2.15404 2.58166 3.28863 3.43006 3.60574 3.63083 3.68119 3.82197 3.85323 3.89681 3.95335 4.05997 4.23453 4.29502 4.36873 4.42273 4.46077 4.58441 4.69170 4.74744 4.78459 4.84544 4.94826 4.97417 4.98865 5.00847 5.12784 5.22557 5.36857 5.49357 5.61653 5.85314 6.44397 6.71309 7.13626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.017 4.017 3 Si 0.710 3.290 4 C -0.228 4.228 5 C -0.067 4.067 6 C -0.167 4.167 7 C 0.573 3.427 8 O -0.559 6.559 9 N -0.690 5.690 10 C 0.118 3.882 11 H 0.085 0.915 12 C -0.143 4.143 13 C -0.062 4.062 14 H 0.121 0.879 15 C -0.068 4.068 16 C -0.102 4.102 17 C -0.114 4.114 18 C -0.108 4.108 19 C -0.103 4.103 20 Br -0.064 7.064 21 C -0.098 4.098 22 C -0.125 4.125 23 C -0.139 4.139 24 Cl 0.002 6.998 25 S 0.265 5.735 26 H 0.398 0.602 27 H 0.136 0.864 28 H -0.263 1.263 29 H -0.266 1.266 30 H 0.181 0.819 31 H 0.415 0.585 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.096 0.904 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 4.375 -5.872 8.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.130 4.130 3 Si 0.613 3.387 4 C -0.346 4.346 5 C -0.096 4.096 6 C -0.187 4.187 7 C 0.359 3.641 8 O -0.438 6.438 9 N -0.343 5.343 10 C 0.012 3.988 11 H 0.103 0.897 12 C -0.182 4.182 13 C -0.080 4.080 14 H 0.139 0.861 15 C -0.069 4.069 16 C -0.120 4.120 17 C -0.133 4.133 18 C -0.128 4.128 19 C -0.182 4.182 20 Br 0.022 6.978 21 C -0.118 4.118 22 C -0.163 4.163 23 C -0.286 4.286 24 Cl 0.031 6.969 25 S 0.530 5.470 26 H 0.249 0.751 27 H 0.153 0.847 28 H -0.189 1.189 29 H -0.191 1.191 30 H 0.199 0.801 31 H 0.253 0.747 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.115 0.885 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.110 5.386 -5.228 7.797 hybrid contribution -0.409 -1.943 -0.324 2.012 sum -2.519 3.443 -5.551 7.001 Atomic orbital electron populations 1.86518 1.16077 1.81956 1.50470 1.24397 0.85536 1.08560 0.94554 0.94334 0.79802 0.76032 0.88490 1.24946 1.08229 0.98678 1.02744 1.21136 0.98907 0.95496 0.94035 1.20310 1.06507 0.93967 0.97870 1.17692 0.77994 0.84571 0.83853 1.90864 1.47371 1.82307 1.23292 1.45345 1.56318 1.07970 1.24627 1.21860 0.98319 0.81037 0.97601 0.89691 1.23576 0.96369 1.01568 0.96676 1.21626 0.94360 0.94194 0.97812 0.86052 1.19853 0.96717 0.95228 0.95125 1.21549 0.94339 0.98262 0.97813 1.21495 1.00180 0.92788 0.98823 1.21354 0.96420 1.00660 0.94382 1.21935 1.02381 0.94760 0.99149 1.96760 1.94922 1.46439 1.59695 1.21079 0.99414 0.91651 0.99671 1.23374 0.94595 0.98980 0.99380 1.25821 1.04754 1.02209 0.95828 1.98428 1.76762 1.97527 1.24189 1.83213 1.50061 1.04948 1.08772 0.75126 0.84714 1.18891 1.19149 0.80141 0.74682 0.91065 0.89101 0.82983 0.83032 0.84566 0.84870 0.88540 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 3.96 12.88 -148.98 -1.92 2.04 16 2 C -0.02 0.13 2.94 71.23 0.21 0.34 16 3 Si 0.71 -4.57 30.92 68.60 2.12 -2.45 16 4 C -0.23 1.31 5.65 24.51 0.14 1.45 16 5 C -0.07 0.34 9.75 22.70 0.22 0.56 16 6 C -0.17 -0.26 5.98 -19.84 -0.12 -0.38 16 7 C 0.57 2.82 7.79 86.55 0.67 3.49 16 8 O -0.56 -7.41 14.51 -4.19 -0.06 -7.47 16 9 N -0.69 1.55 5.24 -443.38 -2.32 -0.78 16 10 C 0.12 -0.18 4.33 45.58 0.20 0.02 16 11 H 0.08 0.31 7.46 -2.39 -0.02 0.29 16 12 C -0.14 0.35 7.27 31.18 0.23 0.58 16 13 C -0.06 0.37 3.86 -11.01 -0.04 0.33 16 14 H 0.12 -1.19 8.09 -2.38 -0.02 -1.21 16 15 C -0.07 0.18 5.29 -19.87 -0.11 0.07 16 16 C -0.10 0.40 9.71 22.27 0.22 0.62 16 17 C -0.11 0.31 10.05 22.27 0.22 0.54 16 18 C -0.11 -0.05 9.79 22.29 0.22 0.16 16 19 C -0.10 -0.26 6.22 22.31 0.14 -0.12 16 20 Br -0.06 -0.25 33.70 -20.37 -0.69 -0.94 16 21 C -0.10 -0.05 8.29 22.29 0.18 0.13 16 22 C -0.13 0.70 7.29 31.12 0.23 0.93 16 23 C -0.14 -0.44 6.87 67.35 0.46 0.03 16 24 Cl 0.00 0.02 27.20 -2.72 -0.07 -0.06 16 25 S 0.26 -0.88 20.19 -56.49 -1.14 -2.02 16 26 H 0.40 -5.74 8.70 -74.06 -0.64 -6.38 16 27 H 0.14 -1.14 7.96 -2.39 -0.02 -1.16 16 28 H -0.26 0.42 7.11 99.48 0.71 1.13 16 29 H -0.27 -0.01 7.11 99.48 0.71 0.69 16 30 H 0.18 -1.91 7.10 -2.91 -0.02 -1.93 16 31 H 0.42 -3.60 7.25 -92.70 -0.67 -4.27 16 32 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.09 -0.13 6.38 -2.39 -0.02 -0.14 16 34 H 0.15 -1.37 8.05 -2.91 -0.02 -1.39 16 35 H 0.15 -1.08 8.06 -2.91 -0.02 -1.11 16 36 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 37 H 0.13 -0.04 6.72 -2.91 -0.02 -0.06 16 38 H 0.10 -0.43 7.66 -2.39 -0.02 -0.45 16 39 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 Total: 0.00 -18.78 377.69 -1.15 -19.93 By element: Atomic # 1 Polarization: -16.87 SS G_CDS: -0.14 Total: -17.01 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 3.07 Total: 8.75 kcal Atomic # 7 Polarization: 1.55 SS G_CDS: -2.32 Total: -0.78 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -1.98 Total: -5.42 kcal Atomic # 14 Polarization: -4.57 SS G_CDS: 2.12 Total: -2.45 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -1.14 Total: -2.02 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.07 Total: -0.06 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -0.69 Total: -0.94 kcal Total: -18.78 -1.15 -19.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.307 kcal (2) G-P(sol) polarization free energy of solvation -18.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds