Wall clock time and date at job start Sun Mar 7 2021 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86296 * 109.46874 * 2 1 4 4 C 1.50692 * 109.47522 * 239.99672 * 2 1 3 5 5 C 1.34179 * 125.44150 * 299.98514 * 4 2 1 6 6 C 1.47019 * 105.95831 * 179.79400 * 5 4 2 7 7 C 1.47375 * 127.19624 * 180.25995 * 6 5 4 8 8 O 1.21620 * 119.99590 * 0.18342 * 7 6 5 9 9 N 1.34773 * 120.00313 * 180.17964 * 7 6 5 10 10 C 1.46502 * 120.00177 * 180.02562 * 9 7 6 11 11 H 1.09007 * 112.84977 * 23.80102 * 10 9 7 12 12 C 1.53781 * 113.61823 * 154.99747 * 10 9 7 13 13 C 1.53788 * 87.07896 * 89.11300 * 12 10 9 14 14 H 1.08996 * 113.61381 * 270.80419 * 13 12 10 15 15 C 1.50701 * 113.61045 * 139.98081 * 13 12 10 16 16 C 1.38219 * 119.99155 * 119.99970 * 15 13 12 17 17 C 1.38260 * 120.02027 * 179.97438 * 16 15 13 18 18 C 1.38202 * 120.00971 * 0.05141 * 17 16 15 19 19 C 1.38342 * 119.98810 * 359.97212 * 18 17 16 20 20 Br 1.89100 * 120.00857 * 180.02562 * 19 18 17 21 21 C 1.38237 * 119.99502 * 299.72523 * 15 13 12 22 22 C 1.53775 * 113.61141 * 252.49775 * 10 9 7 23 23 C 1.36416 * 105.61463 * 0.38985 * 6 5 4 24 24 O 1.33657 * 108.39790 * 359.60569 * 23 6 5 25 25 H 0.96689 * 114.00131 * 299.99838 * 1 2 3 26 26 H 1.09004 * 109.47289 * 119.99480 * 2 1 3 27 27 H 1.48500 * 110.00117 * 178.67919 * 3 2 1 28 28 H 1.48502 * 110.00044 * 299.99488 * 3 2 1 29 29 H 1.08002 * 127.01580 * 0.06843 * 5 4 2 30 30 H 0.96997 * 119.99658 * 359.97438 * 9 7 6 31 31 H 1.08989 * 113.61549 * 203.66214 * 12 10 9 32 32 H 1.09006 * 113.61149 * 334.48742 * 12 10 9 33 33 H 1.08005 * 119.99285 * 359.97438 * 16 15 13 34 34 H 1.08002 * 119.99502 * 180.02562 * 17 16 15 35 35 H 1.07999 * 120.00545 * 179.97438 * 18 17 16 36 36 H 1.07999 * 120.00906 * 0.02562 * 21 15 13 37 37 H 1.08999 * 113.61791 * 25.42949 * 22 10 9 38 38 H 1.09002 * 113.61802 * 156.33190 * 22 10 9 39 39 H 1.08002 * 125.80495 * 179.87525 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2303 5 6 1.6758 -1.9883 -1.5498 6 6 2.3647 -2.2316 -2.8256 7 6 2.3879 -3.4847 -3.6008 8 8 1.7877 -4.4617 -3.1954 9 7 3.0742 -3.5481 -4.7590 10 6 3.0968 -4.7937 -5.5299 11 1 2.2406 -5.4357 -5.3222 12 6 3.3604 -4.5849 -7.0305 13 6 4.8587 -4.6980 -6.7027 14 1 5.3238 -3.7449 -6.4512 15 6 5.6427 -5.4803 -7.7247 16 6 6.6841 -4.8783 -8.4055 17 6 7.4041 -5.5956 -9.3428 18 6 7.0821 -6.9147 -9.6002 19 6 6.0396 -7.5175 -8.9194 20 35 5.5991 -9.3227 -9.2705 21 6 5.3239 -6.8016 -7.9769 22 6 4.4470 -5.5276 -5.4751 23 6 2.9806 -1.0557 -3.1404 24 8 2.7068 -0.1661 -2.1812 25 1 -0.3933 0.4416 0.7650 26 1 1.7924 -0.5138 0.8900 27 1 3.5345 1.7704 0.0322 28 1 1.5615 2.4678 -1.2086 29 1 1.0812 -2.6928 -0.9871 30 1 3.5526 -2.7688 -5.0825 31 1 2.9879 -5.3958 -7.6562 32 1 3.0645 -3.6003 -7.3929 33 1 6.9354 -3.8471 -8.2053 34 1 8.2180 -5.1249 -9.8743 35 1 7.6444 -7.4748 -10.3327 36 1 4.5128 -7.2731 -7.4420 37 1 5.0297 -5.3038 -4.5815 38 1 4.3716 -6.5964 -5.6756 39 1 3.5830 -0.8732 -4.0180 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:40:23 Heat of formation + Delta-G solvation = 12.580387 kcal Electronic energy + Delta-G solvation = -24681.398064 eV Core-core repulsion = 20797.647781 eV Total energy + Delta-G solvation = -3883.750282 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.030 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.86391 -41.63493 -40.34258 -38.83406 -37.90573 -34.95276 -33.99207 -33.32371 -32.22029 -31.49454 -30.25851 -27.00333 -26.76407 -26.33422 -24.95418 -23.46672 -22.48687 -22.37507 -21.13355 -20.25384 -18.96413 -18.65130 -18.17135 -17.49279 -17.27166 -17.07137 -16.52095 -16.24103 -15.99649 -15.92431 -15.77847 -15.17062 -15.12041 -14.64092 -14.51052 -14.30808 -14.28867 -14.19164 -13.80247 -13.53396 -13.47270 -12.96425 -12.70600 -12.39487 -12.16557 -12.06240 -11.92808 -11.58052 -11.37893 -11.31952 -11.23309 -11.08246 -10.52345 -10.24132 -9.87262 -9.83987 -9.63789 -5.03074 0.08815 0.11987 0.25072 0.62221 0.70322 1.18849 1.50908 1.69853 1.90273 2.01577 2.12980 2.55843 3.28195 3.38529 3.39706 3.59190 3.63643 3.68558 3.80749 3.84032 3.90829 4.03571 4.20192 4.21327 4.27007 4.34427 4.39784 4.42689 4.54784 4.66121 4.71068 4.75412 4.80252 4.91914 4.94344 4.96999 5.03857 5.07594 5.20210 5.33945 5.44449 5.57116 5.71034 5.83193 6.37444 6.82136 7.05245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.049 4.049 3 Si 0.818 3.182 4 C -0.029 4.029 5 C -0.145 4.145 6 C -0.263 4.263 7 C 0.591 3.409 8 O -0.581 6.581 9 N -0.690 5.690 10 C 0.114 3.886 11 H 0.083 0.917 12 C -0.124 4.124 13 C -0.061 4.061 14 H 0.124 0.876 15 C -0.069 4.069 16 C -0.101 4.101 17 C -0.114 4.114 18 C -0.108 4.108 19 C -0.103 4.103 20 Br -0.064 7.064 21 C -0.099 4.099 22 C -0.145 4.145 23 C 0.058 3.942 24 O -0.184 6.184 25 H 0.414 0.586 26 H 0.119 0.881 27 H -0.287 1.287 28 H -0.302 1.302 29 H 0.152 0.848 30 H 0.417 0.583 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 7.910 1.063 8.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.157 4.157 3 Si 0.722 3.278 4 C -0.076 4.076 5 C -0.165 4.165 6 C -0.268 4.268 7 C 0.380 3.620 8 O -0.462 6.462 9 N -0.342 5.342 10 C 0.009 3.991 11 H 0.101 0.899 12 C -0.162 4.162 13 C -0.079 4.079 14 H 0.142 0.858 15 C -0.070 4.070 16 C -0.119 4.119 17 C -0.133 4.133 18 C -0.128 4.128 19 C -0.182 4.182 20 Br 0.022 6.978 21 C -0.119 4.119 22 C -0.183 4.183 23 C -0.012 4.012 24 O -0.081 6.081 25 H 0.267 0.733 26 H 0.136 0.864 27 H -0.214 1.214 28 H -0.230 1.230 29 H 0.169 0.831 30 H 0.255 0.745 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 3.526 7.092 0.284 7.925 hybrid contribution 0.134 -0.689 -0.406 0.811 sum 3.660 6.403 -0.122 7.376 Atomic orbital electron populations 1.86410 1.16377 1.82740 1.52037 1.24143 0.86394 1.12795 0.92388 0.93952 0.77039 0.72861 0.83951 1.21698 0.99409 0.92880 0.93628 1.22594 1.01644 0.96111 0.96138 1.21501 1.09424 0.95897 0.99941 1.17408 0.77844 0.86121 0.80629 1.90795 1.46246 1.38681 1.70447 1.45293 1.52058 1.15203 1.21654 1.21872 0.98766 0.86097 0.92402 0.89894 1.23377 0.94436 1.04580 0.93795 1.21635 0.94379 0.99146 0.92756 0.85756 1.19843 0.96512 0.93083 0.97559 1.21548 0.94111 1.01286 0.94953 1.21500 1.00364 0.93334 0.98088 1.21358 0.95889 0.96215 0.99325 1.21941 1.01681 0.91751 1.02871 1.96762 1.93525 1.12298 1.95226 1.21093 0.99594 0.94546 0.96657 1.23562 0.96232 1.00146 0.98382 1.25350 0.97936 0.85523 0.92397 1.83734 1.55070 1.40806 1.28491 0.73308 0.86354 1.21408 1.23009 0.83059 0.74523 0.88486 0.88699 0.82866 0.82995 0.84556 0.84898 0.91059 0.88992 0.72026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.57 12.84 -148.98 -1.91 -1.34 16 2 C -0.05 0.08 2.97 71.23 0.21 0.29 16 3 Si 0.82 -3.08 32.08 68.60 2.20 -0.88 16 4 C -0.03 -0.15 6.24 24.76 0.15 0.01 16 5 C -0.15 -1.19 10.88 23.65 0.26 -0.93 16 6 C -0.26 -1.32 6.31 -18.99 -0.12 -1.44 16 7 C 0.59 4.25 7.81 86.65 0.68 4.92 16 8 O -0.58 -9.98 16.58 -4.09 -0.07 -10.04 16 9 N -0.69 1.27 5.25 -443.34 -2.33 -1.06 16 10 C 0.11 -0.11 4.32 45.52 0.20 0.09 16 11 H 0.08 0.39 7.46 -2.38 -0.02 0.37 16 12 C -0.12 0.71 7.29 31.12 0.23 0.94 16 13 C -0.06 0.39 3.86 -11.01 -0.04 0.35 16 14 H 0.12 -1.35 8.09 -2.39 -0.02 -1.37 16 15 C -0.07 0.20 5.29 -19.87 -0.11 0.09 16 16 C -0.10 0.44 9.71 22.27 0.22 0.66 16 17 C -0.11 0.34 10.05 22.27 0.22 0.56 16 18 C -0.11 -0.04 9.79 22.29 0.22 0.18 16 19 C -0.10 -0.26 6.22 22.31 0.14 -0.12 16 20 Br -0.06 -0.25 33.70 -20.37 -0.69 -0.94 16 21 C -0.10 -0.05 8.37 22.29 0.19 0.13 16 22 C -0.14 0.33 7.25 31.12 0.23 0.56 16 23 C 0.06 -0.11 11.61 67.39 0.78 0.67 16 24 O -0.18 -0.65 8.89 4.36 0.04 -0.61 16 25 H 0.41 -5.26 8.74 -74.06 -0.65 -5.91 16 26 H 0.12 -0.78 7.96 -2.39 -0.02 -0.80 16 27 H -0.29 -0.53 7.11 99.48 0.71 0.18 16 28 H -0.30 -1.47 7.11 99.48 0.71 -0.76 16 29 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 30 H 0.42 -4.15 7.67 -92.71 -0.71 -4.86 16 31 H 0.10 -0.44 7.73 -2.39 -0.02 -0.46 16 32 H 0.09 -0.79 8.14 -2.38 -0.02 -0.81 16 33 H 0.15 -1.48 8.05 -2.91 -0.02 -1.50 16 34 H 0.15 -1.13 8.06 -2.91 -0.02 -1.15 16 35 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 36 H 0.13 -0.03 6.64 -2.91 -0.02 -0.05 16 37 H 0.07 -0.06 8.14 -2.39 -0.02 -0.07 16 38 H 0.09 -0.11 6.30 -2.39 -0.02 -0.13 16 39 H 0.26 -3.71 7.47 -2.91 -0.02 -3.73 16 Total: 0.00 -28.25 358.11 0.48 -27.77 By element: Atomic # 1 Polarization: -19.62 SS G_CDS: -0.21 Total: -19.83 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 3.45 Total: 6.95 kcal Atomic # 7 Polarization: 1.27 SS G_CDS: -2.33 Total: -1.06 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -1.94 Total: -12.00 kcal Atomic # 14 Polarization: -3.08 SS G_CDS: 2.20 Total: -0.88 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -0.69 Total: -0.94 kcal Total: -28.25 0.48 -27.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.346 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds