Wall clock time and date at job start Sun Mar 7 2021 01:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86300 * 109.47209 * 2 1 4 4 C 1.50700 * 109.47330 * 120.00136 * 2 1 3 5 5 C 1.31113 * 118.54706 * 250.00268 * 4 2 1 6 6 N 1.38927 * 121.84612 * 180.64200 * 5 4 2 7 7 C 1.47136 * 118.81058 * 346.19809 * 6 5 4 8 8 C 1.50700 * 109.79456 * 163.52357 * 7 6 5 9 9 O 1.21275 * 119.99872 * 341.95483 * 8 7 6 10 10 N 1.34773 * 120.00051 * 161.95533 * 8 7 6 11 11 C 1.46499 * 119.99866 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.85195 * 336.19837 * 11 10 8 13 13 C 1.53782 * 113.61444 * 107.50646 * 11 10 8 14 14 C 1.53780 * 87.08211 * 89.11214 * 13 11 10 15 15 H 1.09003 * 113.69463 * 270.87659 * 14 13 11 16 16 C 1.50699 * 113.61434 * 139.97885 * 14 13 11 17 17 C 1.38220 * 119.99629 * 142.50404 * 16 14 13 18 18 C 1.38267 * 120.02222 * 180.02562 * 17 16 14 19 19 C 1.38190 * 120.00850 * 359.95482 * 18 17 16 20 20 C 1.38354 * 119.99164 * 0.02562 * 19 18 17 21 21 Br 1.89100 * 120.01006 * 180.02562 * 20 19 18 22 22 C 1.38243 * 119.99510 * 322.23319 * 16 14 13 23 23 C 1.53787 * 87.08051 * 25.43741 * 14 13 11 24 24 C 1.53538 * 107.53522 * 44.06904 * 7 6 5 25 25 C 1.50202 * 118.54267 * 69.97861 * 4 2 1 26 26 H 0.96696 * 113.99547 * 299.99733 * 1 2 3 27 27 H 1.09001 * 109.46937 * 240.00153 * 2 1 3 28 28 H 1.48502 * 110.00130 * 178.68258 * 3 2 1 29 29 H 1.48499 * 109.99978 * 300.00086 * 3 2 1 30 30 H 1.08002 * 119.07306 * 0.35352 * 5 4 2 31 31 H 0.96998 * 120.55860 * 166.42678 * 6 5 4 32 32 H 1.09003 * 110.02146 * 284.48927 * 7 6 5 33 33 H 0.97003 * 120.00007 * 0.02562 * 10 8 7 34 34 H 1.08997 * 113.61913 * 203.66703 * 13 11 10 35 35 H 1.09010 * 113.60966 * 334.57037 * 13 11 10 36 36 H 1.08004 * 119.99177 * 359.97438 * 17 16 14 37 37 H 1.07996 * 119.99370 * 179.97438 * 18 17 16 38 38 H 1.08002 * 120.00658 * 179.97438 * 19 18 17 39 39 H 1.08002 * 120.00494 * 0.02562 * 22 16 14 40 40 H 1.09000 * 113.61283 * 220.01799 * 23 14 13 41 41 H 1.08996 * 113.61721 * 89.11404 * 23 14 13 42 42 H 1.09003 * 109.62158 * 179.16258 * 24 7 6 43 43 H 1.09003 * 109.77780 * 58.69931 * 24 7 6 44 44 H 1.09004 * 109.33086 * 280.22470 * 25 4 2 45 45 H 1.08998 * 109.33730 * 39.88115 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.5116 -0.0029 2.1695 6 7 3.0115 -0.5889 3.3257 7 6 2.6222 -1.9713 3.6453 8 6 3.5602 -2.5397 4.6788 9 8 4.6366 -2.0162 4.8739 10 7 3.2028 -3.6297 5.3863 11 6 4.1150 -4.1825 6.3906 12 1 5.1570 -3.9223 6.2049 13 6 3.6635 -3.9293 7.8387 14 6 2.8825 -5.2506 7.7431 15 1 1.8667 -5.1327 7.3659 16 6 2.9480 -6.0826 8.9979 17 6 1.8373 -6.7913 9.4158 18 6 1.8966 -7.5545 10.5672 19 6 3.0667 -7.6096 11.3003 20 6 4.1788 -6.9007 10.8823 21 35 5.7805 -6.9764 11.8846 22 6 4.1205 -6.1413 9.7278 23 6 3.8936 -5.6791 6.6665 24 6 2.7170 -2.7899 2.3498 25 6 1.7448 -2.1977 1.3269 26 1 -0.3932 0.4417 0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 3.5347 1.7703 0.0321 29 1 1.5615 2.4679 -1.2085 30 1 2.6077 1.0648 2.0383 31 1 3.6038 -0.0939 3.9130 32 1 1.5997 -1.9934 4.0225 33 1 2.3420 -4.0486 5.2300 34 1 4.4790 -3.9553 8.5613 35 1 3.0257 -3.0523 7.9501 36 1 0.9226 -6.7484 8.8431 37 1 1.0284 -8.1077 10.8935 38 1 3.1129 -8.2054 12.2000 39 1 4.9895 -5.5906 9.3991 40 1 3.4417 -6.2148 5.8317 41 1 4.7721 -6.1836 7.0687 42 1 2.4490 -3.8270 2.5517 43 1 3.7332 -2.7441 1.9581 44 1 0.7216 -2.4137 1.6347 45 1 1.9312 -2.6488 0.3524 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_15413834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:40:36 Heat of formation + Delta-G solvation = 11.226938 kcal Electronic energy + Delta-G solvation = -27333.663302 eV Core-core repulsion = 23364.723895 eV Total energy + Delta-G solvation = -3968.939408 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.073 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.79491 -40.86591 -39.65433 -38.73347 -37.28855 -34.80629 -33.37312 -33.17977 -32.87614 -31.67176 -30.23919 -27.73191 -26.71503 -26.12289 -25.32760 -23.85518 -23.41285 -22.48290 -21.90513 -20.20507 -19.37738 -18.97497 -18.22016 -17.81321 -17.22998 -16.79813 -16.53254 -16.25809 -16.18580 -15.96103 -15.69544 -15.24034 -15.17483 -15.02845 -14.77823 -14.48806 -14.34427 -14.21750 -14.08925 -14.05937 -13.48017 -13.40047 -13.02364 -12.94951 -12.92404 -12.36215 -12.24546 -12.02193 -11.92919 -11.89396 -11.86042 -11.54262 -11.32928 -11.24670 -11.19658 -10.89956 -10.16904 -10.13044 -9.83251 -9.61310 -8.44080 -5.00496 0.11303 0.27436 0.64053 1.35128 1.40742 1.46977 1.64027 1.87055 2.01174 2.58311 2.64663 3.43608 3.51733 3.62860 3.69255 3.70541 3.83732 3.84749 3.90847 3.95051 4.05659 4.06265 4.23872 4.30056 4.33127 4.42505 4.47276 4.57185 4.63596 4.66026 4.69555 4.75212 4.77099 4.83833 4.95417 4.98323 5.01249 5.02596 5.12886 5.22606 5.24811 5.30921 5.37161 5.48707 5.58639 5.61768 5.85674 6.26048 6.46771 6.83263 6.96816 7.11895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.044 4.044 3 Si 0.754 3.246 4 C -0.290 4.290 5 C 0.145 3.855 6 N -0.738 5.738 7 C 0.141 3.859 8 C 0.515 3.485 9 O -0.574 6.574 10 N -0.692 5.692 11 C 0.117 3.883 12 H 0.082 0.918 13 C -0.144 4.144 14 C -0.062 4.062 15 H 0.124 0.876 16 C -0.069 4.069 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.109 4.109 20 C -0.103 4.103 21 Br -0.064 7.064 22 C -0.099 4.099 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.051 4.051 26 H 0.392 0.608 27 H 0.091 0.909 28 H -0.297 1.297 29 H -0.308 1.308 30 H 0.147 0.853 31 H 0.407 0.593 32 H 0.119 0.881 33 H 0.420 0.580 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.051 0.949 44 H 0.080 0.920 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 -2.323 2.505 7.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.156 4.156 3 Si 0.663 3.337 4 C -0.301 4.301 5 C 0.025 3.975 6 N -0.371 5.371 7 C 0.032 3.968 8 C 0.302 3.698 9 O -0.453 6.453 10 N -0.344 5.344 11 C 0.011 3.989 12 H 0.100 0.900 13 C -0.182 4.182 14 C -0.080 4.080 15 H 0.142 0.858 16 C -0.070 4.070 17 C -0.119 4.119 18 C -0.133 4.133 19 C -0.129 4.129 20 C -0.183 4.183 21 Br 0.021 6.979 22 C -0.119 4.119 23 C -0.164 4.164 24 C -0.162 4.162 25 C -0.088 4.088 26 H 0.242 0.758 27 H 0.108 0.892 28 H -0.225 1.225 29 H -0.236 1.236 30 H 0.164 0.836 31 H 0.244 0.756 32 H 0.137 0.863 33 H 0.258 0.742 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.633 -1.836 2.094 5.405 hybrid contribution 0.211 -0.449 -0.204 0.537 sum -4.422 -2.285 1.890 5.324 Atomic orbital electron populations 1.86436 1.18096 1.82080 1.50478 1.24724 0.84721 1.08528 0.97581 0.94417 0.77500 0.76613 0.85152 1.20976 1.14433 0.96713 0.97942 1.20477 0.94687 0.96309 0.86039 1.44427 1.54335 1.12871 1.25448 1.21123 0.97958 0.83784 0.93928 1.20912 0.87095 0.80473 0.81364 1.90730 1.25061 1.60997 1.68497 1.45465 1.21633 1.29232 1.38042 1.21807 0.94261 0.94964 0.87891 0.90009 1.23541 1.00541 0.97729 0.96398 1.21644 1.00696 0.93787 0.91882 0.85772 1.19872 0.92781 0.97774 0.96534 1.21557 0.98962 0.95161 0.96246 1.21496 0.97811 0.99010 0.95001 1.21351 0.92196 0.98580 1.00757 1.21943 0.93171 1.04619 0.98540 1.96762 1.30813 1.98200 1.72117 1.21086 0.99243 0.98154 0.93380 1.23376 0.99857 0.94396 0.98812 1.21853 1.00349 0.99978 0.93995 1.19942 0.99156 0.91261 0.98484 0.75837 0.89185 1.22485 1.23628 0.83646 0.75601 0.86325 0.74211 0.89314 0.90820 0.82870 0.83072 0.84653 0.84896 0.88785 0.88843 0.88019 0.92975 0.90180 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.32 12.88 -148.98 -1.92 -2.23 16 2 C -0.04 -0.01 2.81 71.24 0.20 0.19 16 3 Si 0.75 -0.35 29.72 68.60 2.04 1.69 16 4 C -0.29 0.30 5.37 -16.76 -0.09 0.21 16 5 C 0.15 -0.32 9.61 83.42 0.80 0.49 16 6 N -0.74 1.07 5.47 -328.78 -1.80 -0.73 16 7 C 0.14 -0.61 3.36 44.30 0.15 -0.46 16 8 C 0.52 -0.37 7.10 87.66 0.62 0.25 16 9 O -0.57 -5.04 15.66 -3.02 -0.05 -5.09 16 10 N -0.69 4.67 5.26 -440.04 -2.32 2.35 16 11 C 0.12 -0.51 4.32 45.52 0.20 -0.32 16 12 H 0.08 0.10 7.46 -2.39 -0.02 0.08 16 13 C -0.14 0.71 7.25 31.12 0.23 0.94 16 14 C -0.06 0.50 3.86 -11.01 -0.04 0.46 16 15 H 0.12 -1.53 8.09 -2.39 -0.02 -1.55 16 16 C -0.07 0.28 5.29 -19.87 -0.11 0.17 16 17 C -0.10 0.53 9.71 22.27 0.22 0.75 16 18 C -0.11 0.42 10.05 22.27 0.22 0.65 16 19 C -0.11 0.03 9.79 22.29 0.22 0.25 16 20 C -0.10 -0.17 6.22 22.31 0.14 -0.03 16 21 Br -0.06 -0.21 33.70 -20.37 -0.69 -0.89 16 22 C -0.10 0.06 8.34 22.29 0.19 0.25 16 23 C -0.13 0.98 7.29 31.12 0.23 1.20 16 24 C -0.12 0.48 5.47 30.79 0.17 0.65 16 25 C -0.05 0.12 5.85 29.71 0.17 0.29 16 26 H 0.39 -3.11 8.70 -74.06 -0.64 -3.75 16 27 H 0.09 0.26 7.96 -2.39 -0.02 0.24 16 28 H -0.30 -1.67 7.11 99.48 0.71 -0.96 16 29 H -0.31 -2.40 7.11 99.48 0.71 -1.70 16 30 H 0.15 -0.84 4.49 -2.91 -0.01 -0.85 16 31 H 0.41 -0.11 8.08 -92.71 -0.75 -0.86 16 32 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 33 H 0.42 -5.61 8.70 -92.71 -0.81 -6.42 16 34 H 0.09 -0.30 6.32 -2.39 -0.02 -0.31 16 35 H 0.07 -0.29 8.14 -2.38 -0.02 -0.31 16 36 H 0.15 -1.61 8.05 -2.91 -0.02 -1.63 16 37 H 0.15 -1.21 8.06 -2.91 -0.02 -1.23 16 38 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 39 H 0.13 -0.20 6.67 -2.91 -0.02 -0.22 16 40 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 41 H 0.09 -0.56 7.71 -2.39 -0.02 -0.58 16 42 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 43 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 45 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: 0.00 -20.31 383.97 -2.33 -22.64 By element: Atomic # 1 Polarization: -22.55 SS G_CDS: -1.11 Total: -23.66 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 3.51 Total: 5.93 kcal Atomic # 7 Polarization: 5.73 SS G_CDS: -4.11 Total: 1.62 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -1.97 Total: -7.32 kcal Atomic # 14 Polarization: -0.35 SS G_CDS: 2.04 Total: 1.69 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -0.69 Total: -0.89 kcal Total: -20.31 -2.33 -22.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_15413834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.864 kcal (2) G-P(sol) polarization free energy of solvation -20.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds