Wall clock time and date at job start Sun Mar 7 2021 01:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47108 * 2 1 4 4 C 1.50706 * 109.46801 * 119.99597 * 2 1 3 5 5 C 1.38268 * 119.94286 * 65.00555 * 4 2 1 6 6 C 1.38139 * 120.05510 * 180.02562 * 5 4 2 7 7 C 1.38733 * 119.94507 * 359.97438 * 6 5 4 8 8 O 1.35905 * 120.05258 * 179.97438 * 7 6 5 9 9 C 1.42901 * 116.99604 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.46937 * 180.02562 * 9 8 7 11 11 C 1.36423 * 125.80013 * 89.72046 * 10 9 8 12 12 C 1.47374 * 127.19155 * 359.95527 * 11 10 9 13 13 O 1.21606 * 120.00089 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99827 * 179.97438 * 12 11 10 15 15 C 1.46504 * 120.00288 * 180.02562 * 14 12 11 16 16 H 1.09004 * 112.84531 * 334.66999 * 15 14 12 17 17 C 1.53773 * 113.61522 * 105.86283 * 15 14 12 18 18 C 1.54059 * 86.98527 * 89.16690 * 17 15 14 19 19 H 1.08997 * 113.60827 * 270.88214 * 18 17 15 20 20 C 1.50700 * 113.69594 * 139.98962 * 18 17 15 21 21 C 1.38212 * 119.99493 * 322.18984 * 20 18 17 22 22 C 1.38269 * 120.02109 * 179.76642 * 21 20 18 23 23 C 1.38192 * 120.00567 * 0.51227 * 22 21 20 24 24 C 1.38352 * 119.99257 * 359.74153 * 23 22 21 25 25 Br 1.89097 * 120.00957 * 179.97438 * 24 23 22 26 26 C 1.38233 * 119.99151 * 142.46831 * 20 18 17 27 27 C 1.53781 * 87.07586 * 25.43228 * 18 17 15 28 28 C 1.47022 * 105.61294 * 179.86708 * 11 10 9 29 29 C 1.34179 * 105.95665 * 0.38848 * 28 11 10 30 30 O 1.33651 * 125.80553 * 270.02134 * 10 9 8 31 31 C 1.38723 * 119.88799 * 0.25807 * 7 6 5 32 32 C 1.38145 * 119.94323 * 359.49123 * 31 7 6 33 33 H 0.96695 * 113.99860 * 300.00689 * 1 2 3 34 34 H 1.08992 * 109.47551 * 239.99632 * 2 1 3 35 35 H 1.48501 * 110.00062 * 299.99589 * 3 2 1 36 36 H 1.48501 * 109.99899 * 61.31843 * 3 2 1 37 37 H 1.08008 * 119.97007 * 359.97438 * 5 4 2 38 38 H 1.08001 * 120.02451 * 179.97438 * 6 5 4 39 39 H 1.08999 * 109.47144 * 300.00205 * 9 8 7 40 40 H 1.08998 * 109.47043 * 59.99803 * 9 8 7 41 41 H 0.96998 * 120.00552 * 0.02562 * 14 12 11 42 42 H 1.09006 * 113.61765 * 203.66644 * 17 15 14 43 43 H 1.09000 * 113.61590 * 334.57312 * 17 15 14 44 44 H 1.08002 * 119.99534 * 0.02562 * 21 20 18 45 45 H 1.08001 * 119.99602 * 180.23181 * 22 21 20 46 46 H 1.08007 * 120.00512 * 179.72122 * 23 22 21 47 47 H 1.08002 * 120.01294 * 359.97438 * 26 20 18 48 48 H 1.09000 * 113.61410 * 220.02679 * 27 18 17 49 49 H 1.09002 * 113.69332 * 89.12830 * 27 18 17 50 50 H 1.08001 * 127.02156 * 180.12548 * 28 11 10 51 51 H 1.07996 * 125.43784 * 179.79096 * 29 28 11 52 52 H 1.08001 * 120.02769 * 179.72249 * 31 7 6 53 53 H 1.08006 * 119.97076 * 180.25587 * 32 31 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 1.6840 -2.0605 1.3973 6 6 2.1428 -2.7138 2.5247 7 6 2.8528 -2.0143 3.4897 8 8 3.3048 -2.6547 4.5999 9 6 4.0278 -1.8713 5.5515 10 6 4.4466 -2.7443 6.7062 11 6 5.6117 -3.4487 6.7926 12 6 6.6930 -3.5080 5.7930 13 8 6.5967 -2.8816 4.7551 14 7 7.7892 -4.2555 6.0297 15 6 8.8645 -4.3141 5.0364 16 1 8.5170 -4.1080 4.0239 17 6 10.1146 -3.5117 5.4338 18 6 10.6154 -4.7919 6.1294 19 1 10.2941 -4.8789 7.1673 20 6 12.0909 -5.0406 5.9507 21 6 12.6995 -4.7502 4.7442 22 6 14.0542 -4.9737 4.5813 23 6 14.7982 -5.4975 5.6213 24 6 14.1885 -5.7933 6.8275 25 35 15.2060 -6.5108 8.2507 26 6 12.8344 -5.5646 6.9917 27 6 9.7344 -5.5777 5.1439 28 6 5.5641 -4.1346 8.0922 29 6 4.3926 -3.7901 8.6483 30 8 3.7372 -2.9647 7.8173 31 6 3.0954 -0.6587 3.3223 32 6 2.6389 -0.0111 2.1907 33 1 -0.3933 0.4418 0.7650 34 1 1.7924 -0.5138 -0.8899 35 1 1.5616 2.4679 -1.2085 36 1 1.5879 2.4585 1.2242 37 1 1.1309 -2.6046 0.6459 38 1 1.9490 -3.7683 2.6546 39 1 4.9130 -1.4485 5.0765 40 1 3.3916 -1.0653 5.9170 41 1 7.8663 -4.7549 6.8577 42 1 10.7270 -3.2083 4.5846 43 1 9.9070 -2.6921 6.1216 44 1 12.1175 -4.3447 3.9298 45 1 14.5300 -4.7431 3.6395 46 1 15.8556 -5.6763 5.4925 47 1 12.3580 -5.7954 7.9331 48 1 9.2199 -6.4246 5.5977 49 1 10.2417 -5.8387 4.2151 50 1 6.3163 -4.7863 8.5115 51 1 4.0344 -4.1234 9.6111 52 1 3.6439 -0.1109 4.0743 53 1 2.8311 1.0434 2.0580 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_4549634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:41:38 Heat of formation + Delta-G solvation = 9.328612 kcal Electronic energy + Delta-G solvation = -38504.639688 eV Core-core repulsion = 33322.548787 eV Total energy + Delta-G solvation = -5182.090901 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 484.076 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -43.72119 -41.55730 -41.30209 -40.29149 -39.27872 -38.77729 -37.30962 -34.87837 -33.94720 -33.12891 -32.83228 -31.99635 -31.95992 -31.40362 -30.11507 -28.02278 -26.69610 -26.50251 -26.11766 -24.65804 -23.81528 -23.51177 -22.75109 -22.38550 -22.05393 -21.04793 -19.96848 -19.51740 -19.22218 -18.39397 -18.08504 -17.44536 -17.24125 -17.11516 -16.96338 -16.73097 -16.48763 -16.36804 -16.17163 -16.08013 -15.82701 -15.73750 -15.49499 -15.08567 -14.91509 -14.69321 -14.56065 -14.48173 -14.39147 -14.28061 -14.19044 -13.83880 -13.63625 -13.47947 -13.46120 -13.38840 -13.12384 -12.86802 -12.33524 -12.32409 -12.14920 -12.07379 -12.01382 -11.90483 -11.62203 -11.54009 -11.36462 -11.15871 -11.15249 -10.96489 -10.58683 -10.14901 -10.05841 -9.84264 -9.82871 -9.59962 -9.26059 -4.91280 -0.04071 0.10503 0.25946 0.28963 0.29031 0.64577 1.03338 1.32469 1.51544 1.59237 1.95061 2.02912 2.12108 2.46458 2.58408 2.63007 3.34192 3.44306 3.44730 3.58749 3.61402 3.67502 3.69198 3.74087 3.78696 3.88761 3.90147 3.93425 3.96445 4.10621 4.11651 4.13075 4.28492 4.30159 4.41590 4.42822 4.45653 4.54523 4.55216 4.66865 4.68672 4.69428 4.77904 4.80563 4.86923 4.94834 4.94985 4.98497 5.02691 5.13557 5.14320 5.23025 5.24635 5.26766 5.37786 5.46743 5.47691 5.63409 5.68022 5.85087 5.88762 6.25122 6.44527 6.50218 7.11365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.077 4.077 3 Si 0.763 3.237 4 C -0.157 4.157 5 C -0.057 4.057 6 C -0.162 4.162 7 C 0.125 3.875 8 O -0.322 6.322 9 C 0.135 3.865 10 C 0.040 3.960 11 C -0.222 4.222 12 C 0.587 3.413 13 O -0.568 6.568 14 N -0.691 5.691 15 C 0.116 3.884 16 H 0.089 0.911 17 C -0.139 4.139 18 C -0.066 4.066 19 H 0.110 0.890 20 C -0.066 4.066 21 C -0.105 4.105 22 C -0.113 4.113 23 C -0.108 4.108 24 C -0.103 4.103 25 Br -0.062 7.062 26 C -0.097 4.097 27 C -0.124 4.124 28 C -0.196 4.196 29 C -0.013 4.013 30 O -0.179 6.179 31 C -0.205 4.205 32 C -0.078 4.078 33 H 0.385 0.615 34 H 0.124 0.876 35 H -0.302 1.302 36 H -0.280 1.280 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.415 0.585 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.086 0.914 49 H 0.105 0.895 50 H 0.192 0.808 51 H 0.251 0.749 52 H 0.147 0.853 53 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -0.809 3.614 4.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.186 4.186 3 Si 0.668 3.332 4 C -0.158 4.158 5 C -0.075 4.075 6 C -0.181 4.181 7 C 0.080 3.920 8 O -0.237 6.237 9 C 0.061 3.939 10 C -0.013 4.013 11 C -0.227 4.227 12 C 0.375 3.625 13 O -0.448 6.448 14 N -0.342 5.342 15 C 0.011 3.989 16 H 0.107 0.893 17 C -0.177 4.177 18 C -0.084 4.084 19 H 0.128 0.872 20 C -0.067 4.067 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.128 4.128 24 C -0.182 4.182 25 Br 0.024 6.976 26 C -0.117 4.117 27 C -0.162 4.162 28 C -0.215 4.215 29 C -0.079 4.079 30 O -0.074 6.074 31 C -0.224 4.224 32 C -0.095 4.095 33 H 0.235 0.765 34 H 0.142 0.858 35 H -0.230 1.230 36 H -0.207 1.207 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.252 0.748 42 H 0.121 0.879 43 H 0.087 0.913 44 H 0.165 0.835 45 H 0.168 0.832 46 H 0.154 0.846 47 H 0.156 0.844 48 H 0.105 0.895 49 H 0.123 0.877 50 H 0.209 0.791 51 H 0.267 0.733 52 H 0.165 0.835 53 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.887 -0.223 3.008 4.175 hybrid contribution -0.919 -0.327 0.838 1.286 sum 1.968 -0.550 3.846 4.355 Atomic orbital electron populations 1.86566 1.18620 1.80378 1.50138 1.25150 0.83319 1.11695 0.98440 0.94065 0.90472 0.72200 0.76458 1.20265 1.02567 0.94951 0.97980 1.20959 0.96568 0.93899 0.96073 1.20627 1.02198 1.01100 0.94155 1.19179 0.94436 0.91706 0.86667 1.86052 1.69060 1.38947 1.29611 1.21148 0.98233 0.90693 0.83864 1.22067 0.90859 1.00303 0.88091 1.21378 0.97317 1.05375 0.98649 1.17383 0.81482 0.78732 0.84879 1.90777 1.80368 1.45795 1.27888 1.45329 1.17581 1.48736 1.22528 1.21878 0.86199 0.98021 0.92828 0.89296 1.23602 0.96261 0.96553 1.01323 1.21651 0.89301 0.96859 1.00590 0.87157 1.19825 0.95700 0.97924 0.93244 1.21447 0.94937 0.98308 0.97586 1.21464 0.94306 0.98116 0.99326 1.21349 1.01077 0.98561 0.91834 1.21964 0.95476 1.06353 0.94429 1.96758 1.71643 1.84214 1.45022 1.21177 0.91684 0.98712 1.00142 1.23386 0.95964 0.96225 1.00630 1.23255 1.00680 1.04548 0.93005 1.24901 0.92692 0.93061 0.97216 1.83793 1.44567 1.53803 1.25250 1.21403 1.06306 0.93322 1.01363 1.21046 0.95728 1.00261 0.92466 0.76547 0.85824 1.23014 1.20661 0.84208 0.84898 0.87243 0.88359 0.74795 0.87947 0.91347 0.83516 0.83176 0.84566 0.84396 0.89515 0.87668 0.79068 0.73330 0.83512 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.06 12.83 -148.98 -1.91 -3.97 16 2 C -0.08 -0.06 2.80 71.24 0.20 0.14 16 3 Si 0.76 -0.68 29.88 68.60 2.05 1.37 16 4 C -0.16 -0.37 5.35 -19.85 -0.11 -0.47 16 5 C -0.06 -0.22 9.68 22.25 0.22 -0.01 16 6 C -0.16 -0.99 9.99 22.36 0.22 -0.77 16 7 C 0.13 0.88 6.69 22.50 0.15 1.03 16 8 O -0.32 -2.82 10.12 -92.48 -0.94 -3.75 16 9 C 0.13 0.58 4.73 71.23 0.34 0.91 16 10 C 0.04 0.18 7.00 25.26 0.18 0.35 16 11 C -0.22 -0.58 6.31 -18.99 -0.12 -0.70 16 12 C 0.59 2.67 7.81 86.65 0.68 3.35 16 13 O -0.57 -6.50 14.47 -4.05 -0.06 -6.55 16 14 N -0.69 1.71 5.26 -443.35 -2.33 -0.62 16 15 C 0.12 -0.35 4.29 45.52 0.20 -0.16 16 16 H 0.09 0.12 7.50 -2.39 -0.02 0.10 16 17 C -0.14 0.64 7.27 31.21 0.23 0.87 16 18 C -0.07 0.43 3.87 -10.92 -0.04 0.38 16 19 H 0.11 -0.94 8.09 -2.39 -0.02 -0.96 16 20 C -0.07 0.21 5.29 -19.87 -0.11 0.11 16 21 C -0.10 0.40 8.60 22.27 0.19 0.59 16 22 C -0.11 0.32 10.05 22.27 0.22 0.54 16 23 C -0.11 0.01 9.79 22.29 0.22 0.23 16 24 C -0.10 -0.15 6.22 22.31 0.14 -0.01 16 25 Br -0.06 -0.15 33.70 -20.37 -0.69 -0.84 16 26 C -0.10 0.08 9.45 22.29 0.21 0.29 16 27 C -0.12 0.85 7.28 31.12 0.23 1.08 16 28 C -0.20 0.89 10.60 23.65 0.25 1.14 16 29 C -0.01 0.06 12.03 66.89 0.80 0.87 16 30 O -0.18 -0.38 10.52 4.50 0.05 -0.34 16 31 C -0.21 -0.67 9.04 22.36 0.20 -0.47 16 32 C -0.08 -0.11 8.66 22.25 0.19 0.08 16 33 H 0.39 -0.67 8.70 -74.06 -0.64 -1.32 16 34 H 0.12 -0.09 7.96 -2.39 -0.02 -0.11 16 35 H -0.30 -2.01 7.11 99.48 0.71 -1.30 16 36 H -0.28 -0.64 7.01 99.48 0.70 0.06 16 37 H 0.14 0.25 8.06 -2.91 -0.02 0.23 16 38 H 0.13 0.65 8.06 -2.91 -0.02 0.63 16 39 H 0.11 0.55 6.03 -2.39 -0.01 0.53 16 40 H 0.10 -0.02 7.65 -2.39 -0.02 -0.04 16 41 H 0.41 -3.37 7.88 -92.71 -0.73 -4.10 16 42 H 0.10 -0.58 6.34 -2.38 -0.02 -0.59 16 43 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.15 -1.11 6.68 -2.91 -0.02 -1.13 16 45 H 0.15 -1.04 8.06 -2.91 -0.02 -1.06 16 46 H 0.14 -0.24 8.06 -2.91 -0.02 -0.26 16 47 H 0.14 -0.42 8.05 -2.91 -0.02 -0.44 16 48 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 49 H 0.10 -0.77 7.72 -2.39 -0.02 -0.79 16 50 H 0.19 -2.26 7.74 -2.91 -0.02 -2.29 16 51 H 0.25 -3.43 8.06 -2.91 -0.02 -3.46 16 52 H 0.15 -0.11 6.30 -2.91 -0.02 -0.13 16 53 H 0.15 -0.43 4.84 -2.91 -0.01 -0.44 16 Total: 0.00 -23.61 461.77 0.51 -23.09 By element: Atomic # 1 Polarization: -17.41 SS G_CDS: -0.35 Total: -17.75 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 4.69 Total: 9.37 kcal Atomic # 7 Polarization: 1.71 SS G_CDS: -2.33 Total: -0.62 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -2.86 Total: -14.62 kcal Atomic # 14 Polarization: -0.68 SS G_CDS: 2.05 Total: 1.37 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.69 Total: -0.84 kcal Total: -23.61 0.51 -23.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_4549634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.421 kcal (2) G-P(sol) polarization free energy of solvation -23.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds