Wall clock time and date at job start Sun Mar 7 2021 01:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35994 * 117.00165 * 2 1 4 4 C 1.39155 * 120.07385 * 180.02562 * 3 2 1 5 5 O 1.35995 * 120.07070 * 359.73996 * 4 3 2 6 6 C 1.42895 * 117.00064 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47460 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99698 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99994 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99638 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84905 * 25.34234 * 10 9 7 12 12 C 1.53783 * 113.61247 * 156.53028 * 10 9 7 13 13 C 1.53781 * 87.08047 * 89.11897 * 12 10 9 14 14 H 1.09007 * 113.61676 * 270.80301 * 13 12 10 15 15 C 1.50696 * 113.61732 * 139.98181 * 13 12 10 16 16 C 1.38201 * 119.99495 * 299.72736 * 15 13 12 17 17 C 1.38345 * 119.99212 * 179.76307 * 16 15 13 18 18 Br 1.89099 * 120.01108 * 180.25152 * 17 16 15 19 19 C 1.38301 * 119.97636 * 0.53220 * 17 16 15 20 20 C 1.38244 * 119.99271 * 359.72126 * 19 17 16 21 21 C 1.38212 * 120.00747 * 0.02562 * 20 19 17 22 22 C 1.53777 * 113.61964 * 254.13735 * 10 9 7 23 23 C 1.38558 * 119.85524 * 179.72156 * 4 3 2 24 24 C 1.38247 * 119.99917 * 359.97438 * 23 4 3 25 25 N 1.48003 * 119.92380 * 179.97438 * 24 23 4 26 26 O 1.21795 * 120.00371 * 0.02562 * 25 24 23 27 27 O 1.21806 * 120.00058 * 180.02562 * 25 24 23 28 28 C 1.38245 * 120.14462 * 359.97438 * 24 23 4 29 29 C 1.50704 * 119.92682 * 179.97438 * 28 24 23 30 30 O 1.42904 * 109.46991 * 74.99881 * 29 28 24 31 31 Si 1.86293 * 109.47500 * 195.00241 * 29 28 24 32 32 C 1.38238 * 120.15335 * 0.02562 * 28 24 23 33 33 H 1.08991 * 109.47071 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46932 * 300.00387 * 1 2 3 35 35 H 1.09002 * 109.46940 * 59.99906 * 1 2 3 36 36 H 1.08999 * 109.47268 * 300.00538 * 6 5 4 37 37 H 1.09005 * 109.46932 * 60.00506 * 6 5 4 38 38 H 0.97002 * 120.00375 * 0.02562 * 9 7 6 39 39 H 1.08998 * 113.61793 * 203.66683 * 12 10 9 40 40 H 1.09001 * 113.61501 * 334.49061 * 12 10 9 41 41 H 1.07999 * 119.99926 * 359.97438 * 16 15 13 42 42 H 1.08004 * 120.00437 * 179.74418 * 19 17 16 43 43 H 1.08004 * 119.99456 * 179.97438 * 20 19 17 44 44 H 1.08001 * 119.98922 * 180.02562 * 21 20 19 45 45 H 1.08998 * 113.61172 * 25.43588 * 22 10 9 46 46 H 1.08994 * 113.61502 * 156.33786 * 22 10 9 47 47 H 1.07995 * 120.00001 * 179.97438 * 23 4 3 48 48 H 1.09004 * 109.47002 * 315.00429 * 29 28 24 49 49 H 0.96702 * 113.99848 * 59.99974 * 30 29 28 50 50 H 1.48492 * 110.00278 * 58.68046 * 31 29 28 51 51 H 1.48499 * 109.99995 * 180.02562 * 31 29 28 52 52 H 1.07998 * 120.00528 * 180.02562 * 32 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1796 0.1476 0.0043 6 6 5.6003 0.3005 0.0028 7 6 6.2519 -1.0584 0.0081 8 8 5.5669 -2.0592 0.0121 9 7 7.5957 -1.1614 0.0082 10 6 8.2290 -2.4824 0.0139 11 1 7.5933 -3.2584 -0.4125 12 6 9.6607 -2.4816 -0.5476 13 6 10.1380 -2.1878 0.8844 14 1 10.1900 -1.1243 1.1179 15 6 11.3903 -2.9331 1.2682 16 6 11.4014 -4.3150 1.2612 17 6 12.5526 -4.9991 1.6088 18 35 12.5705 -6.8900 1.5926 19 6 13.6885 -4.2997 1.9738 20 6 13.6749 -2.9173 1.9855 21 6 12.5262 -2.2343 1.6331 22 6 8.8429 -2.8656 1.3707 23 6 4.0604 2.5232 -0.0064 24 6 3.3031 3.6798 -0.0122 25 7 3.9717 5.0001 -0.0178 26 8 5.1878 5.0669 -0.0178 27 8 3.3058 6.0200 -0.0225 28 6 1.9226 3.6056 -0.0127 29 6 1.1018 4.8695 -0.0185 30 8 1.1357 5.4535 -1.3223 31 14 -0.6595 4.4683 0.4368 32 6 1.2933 2.3748 -0.0069 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8899 35 1 -0.3633 0.5139 -0.8900 36 1 5.9061 0.8462 -0.8898 37 1 5.9070 0.8543 0.8902 38 1 8.1435 -0.3609 0.0054 39 1 9.9825 -3.4524 -0.9246 40 1 9.8542 -1.6699 -1.2489 41 1 10.5125 -4.8608 0.9812 42 1 14.5862 -4.8333 2.2492 43 1 14.5618 -2.3711 2.2709 44 1 12.5160 -1.1544 1.6420 45 1 8.3771 -2.3629 2.2183 46 1 8.9415 -3.9411 1.5173 47 1 5.1387 2.5838 -0.0064 48 1 1.5130 5.5731 0.7055 49 1 0.7842 4.8818 -2.0186 50 1 -0.7052 3.8314 1.7773 51 1 -1.4794 5.7065 0.4340 52 1 0.2147 2.3197 -0.0078 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_4549636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:41:46 Heat of formation + Delta-G solvation = -34.564024 kcal Electronic energy + Delta-G solvation = -40915.576159 eV Core-core repulsion = 35285.243917 eV Total energy + Delta-G solvation = -5630.332243 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 493.071 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -43.39857 -42.13315 -41.63235 -40.64297 -39.71671 -39.22649 -38.70415 -37.72577 -37.12477 -34.79919 -33.34060 -32.67816 -32.56573 -31.89040 -30.26497 -29.78138 -28.74596 -27.91124 -26.73466 -26.29400 -25.71640 -24.01604 -23.51757 -23.19816 -22.50299 -21.99909 -20.78568 -20.20377 -19.83975 -19.50858 -18.80944 -18.67399 -18.34695 -18.09930 -17.74380 -17.60731 -17.36463 -16.94022 -16.85055 -16.47354 -16.36517 -16.15900 -16.07946 -15.67603 -15.64778 -15.18747 -15.10032 -14.86214 -14.63684 -14.49622 -14.38846 -14.26096 -13.96232 -13.89069 -13.49591 -13.48715 -13.41738 -13.02226 -12.94288 -12.66955 -12.49639 -12.43382 -12.37302 -12.32959 -12.26854 -12.21386 -12.03648 -11.90239 -11.77908 -11.56112 -11.33612 -11.21057 -11.10477 -10.53340 -10.45684 -10.21002 -9.84311 -9.62297 -9.48904 -5.13488 -1.36217 -0.43198 0.10391 0.16573 0.26493 0.30753 0.63321 1.12967 1.22362 1.36834 1.57333 1.89838 1.90154 1.93875 2.31995 2.57293 2.98204 3.17546 3.27359 3.41338 3.45230 3.50508 3.56210 3.61688 3.66972 3.83255 3.88117 3.91551 3.94260 3.97868 4.05334 4.06233 4.11612 4.22565 4.22920 4.28996 4.39329 4.41476 4.41699 4.55047 4.56213 4.67759 4.73548 4.74265 4.80957 4.82257 4.93871 4.96867 4.99939 5.10504 5.21486 5.25462 5.35377 5.45417 5.57052 5.61574 5.84630 6.06307 6.38061 6.47038 6.71690 7.07113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.307 6.307 3 C 0.171 3.829 4 C 0.101 3.899 5 O -0.291 6.291 6 C 0.027 3.973 7 C 0.519 3.481 8 O -0.565 6.565 9 N -0.691 5.691 10 C 0.118 3.882 11 H 0.084 0.916 12 C -0.124 4.124 13 C -0.063 4.063 14 H 0.124 0.876 15 C -0.068 4.068 16 C -0.099 4.099 17 C -0.104 4.104 18 Br -0.064 7.064 19 C -0.109 4.109 20 C -0.115 4.115 21 C -0.102 4.102 22 C -0.146 4.146 23 C -0.109 4.109 24 C -0.046 4.046 25 N 0.036 4.964 26 O -0.184 6.184 27 O -0.168 6.168 28 C -0.040 4.040 29 C -0.091 4.091 30 O -0.536 6.536 31 Si 0.786 3.214 32 C -0.163 4.163 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.422 0.578 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.184 0.816 48 H 0.115 0.885 49 H 0.393 0.607 50 H -0.272 1.272 51 H -0.290 1.290 52 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.327 -0.715 -1.599 2.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.219 6.219 3 C 0.122 3.878 4 C 0.053 3.947 5 O -0.203 6.203 6 C -0.051 4.051 7 C 0.305 3.695 8 O -0.442 6.442 9 N -0.345 5.345 10 C 0.012 3.988 11 H 0.102 0.898 12 C -0.162 4.162 13 C -0.081 4.081 14 H 0.142 0.858 15 C -0.069 4.069 16 C -0.119 4.119 17 C -0.183 4.183 18 Br 0.022 6.978 19 C -0.129 4.129 20 C -0.134 4.134 21 C -0.120 4.120 22 C -0.184 4.184 23 C -0.129 4.129 24 C -0.131 4.131 25 N 0.549 4.451 26 O -0.396 6.396 27 O -0.381 6.381 28 C -0.042 4.042 29 C -0.199 4.199 30 O -0.343 6.343 31 Si 0.688 3.312 32 C -0.182 4.182 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.261 0.739 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.169 0.831 44 H 0.171 0.829 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.201 0.799 48 H 0.132 0.868 49 H 0.242 0.758 50 H -0.198 1.198 51 H -0.218 1.218 52 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -2.474 -2.560 -0.727 3.633 hybrid contribution 1.325 1.301 0.400 1.900 sum -1.148 -1.259 -0.327 1.735 Atomic orbital electron populations 1.23815 0.74694 1.07077 1.04194 1.86335 1.24855 1.24522 1.86185 1.18687 0.89193 0.86376 0.93558 1.17957 0.88803 0.85112 1.02792 1.86302 1.18480 1.26807 1.88727 1.22915 0.78813 0.95972 1.07388 1.20316 0.83002 0.90429 0.75762 1.90789 1.63909 1.39837 1.49715 1.45326 1.05064 1.09676 1.74445 1.21826 0.94215 0.85138 0.97603 0.89807 1.23362 0.92318 1.04339 0.96160 1.21706 0.89724 1.00307 0.96391 0.85775 1.19862 0.96054 0.92413 0.98609 1.21094 0.96767 0.94644 0.99358 1.21943 0.98101 0.90079 1.08155 1.96762 1.99187 1.03980 1.97889 1.21353 0.97184 0.95318 0.99001 1.21494 0.99667 0.93246 0.98947 1.21550 0.91957 1.01609 0.96846 1.23609 0.95651 1.01735 0.97432 1.20905 1.03036 0.88095 1.00845 1.20559 0.92759 0.81943 1.17809 1.43715 1.00821 1.03434 0.97150 1.94497 0.96514 1.94115 1.54447 1.94582 1.64426 1.25405 1.53657 1.20219 0.91096 0.97642 0.95272 1.25761 1.10572 0.92831 0.90748 1.86671 1.87120 1.44640 1.15868 0.94393 0.71815 0.82220 0.82779 1.21079 1.01759 0.88106 1.07213 0.86088 0.90205 0.88796 0.85222 0.85394 0.73939 0.88608 0.88567 0.84809 0.84630 0.83115 0.82943 0.90982 0.89164 0.79851 0.86804 0.75803 1.19790 1.21762 0.79013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.81 113.37 1.11 1.16 16 2 O -0.31 0.24 10.28 -79.62 -0.82 -0.58 16 3 C 0.17 -0.28 6.70 22.57 0.15 -0.13 16 4 C 0.10 -0.02 6.70 22.57 0.15 0.13 16 5 O -0.29 -0.68 9.45 -67.08 -0.63 -1.32 16 6 C 0.03 -0.15 5.22 71.24 0.37 0.22 16 7 C 0.52 0.04 7.91 87.66 0.69 0.73 16 8 O -0.56 -6.60 16.12 16.01 0.26 -6.34 16 9 N -0.69 4.63 5.26 -440.03 -2.32 2.31 16 10 C 0.12 -0.49 4.29 45.52 0.20 -0.29 16 11 H 0.08 0.11 7.50 -2.39 -0.02 0.09 16 12 C -0.12 0.97 7.29 31.12 0.23 1.19 16 13 C -0.06 0.49 3.87 -10.92 -0.04 0.45 16 14 H 0.12 -1.48 8.09 -2.38 -0.02 -1.50 16 15 C -0.07 0.25 5.29 -19.87 -0.11 0.15 16 16 C -0.10 0.04 8.37 22.29 0.19 0.22 16 17 C -0.10 -0.20 6.22 22.31 0.14 -0.06 16 18 Br -0.06 -0.22 33.70 -20.37 -0.69 -0.90 16 19 C -0.11 -0.01 9.79 22.29 0.22 0.21 16 20 C -0.11 0.37 10.05 22.26 0.22 0.59 16 21 C -0.10 0.48 9.71 22.27 0.22 0.70 16 22 C -0.15 0.63 7.27 31.21 0.23 0.86 16 23 C -0.11 0.16 8.54 22.35 0.19 0.35 16 24 C -0.05 -0.12 6.85 36.38 0.25 0.13 16 25 N 0.04 0.32 4.45 -46.46 -0.21 0.11 16 26 O -0.18 -1.81 18.44 18.89 0.35 -1.46 16 27 O -0.17 -2.07 14.62 25.10 0.37 -1.70 16 28 C -0.04 0.04 5.26 -19.86 -0.10 -0.06 16 29 C -0.09 0.03 1.74 71.24 0.12 0.15 16 30 O -0.54 -0.42 11.80 -129.62 -1.53 -1.95 16 31 Si 0.79 -4.38 29.91 68.60 2.05 -2.33 16 32 C -0.16 0.93 7.64 22.35 0.17 1.10 16 33 H 0.12 -1.43 8.14 -2.39 -0.02 -1.44 16 34 H 0.08 -1.06 7.67 -2.39 -0.02 -1.08 16 35 H 0.09 -1.46 7.65 -2.39 -0.02 -1.47 16 36 H 0.13 -1.52 7.66 -2.39 -0.02 -1.54 16 37 H 0.13 -1.47 7.66 -2.38 -0.02 -1.49 16 38 H 0.42 -5.98 8.70 -92.71 -0.81 -6.79 16 39 H 0.10 -0.60 7.73 -2.39 -0.02 -0.62 16 40 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 41 H 0.13 -0.18 6.64 -2.91 -0.02 -0.20 16 42 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 43 H 0.15 -1.12 8.06 -2.91 -0.02 -1.14 16 44 H 0.15 -1.50 8.05 -2.91 -0.02 -1.52 16 45 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.09 -0.26 6.30 -2.39 -0.02 -0.27 16 47 H 0.18 -1.15 5.85 -2.91 -0.02 -1.16 16 48 H 0.11 0.52 6.07 -2.38 -0.01 0.50 16 49 H 0.39 -3.61 8.70 -74.06 -0.64 -4.25 16 50 H -0.27 0.60 7.11 99.48 0.71 1.30 16 51 H -0.29 -0.73 7.11 99.48 0.71 -0.03 16 52 H 0.19 -2.48 3.36 -2.91 -0.01 -2.49 16 Total: 0.00 -34.01 454.97 1.06 -32.95 By element: Atomic # 1 Polarization: -26.24 SS G_CDS: -0.37 Total: -26.61 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 4.60 Total: 7.81 kcal Atomic # 7 Polarization: 4.94 SS G_CDS: -2.52 Total: 2.42 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -2.01 Total: -13.35 kcal Atomic # 14 Polarization: -4.38 SS G_CDS: 2.05 Total: -2.33 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.69 Total: -0.90 kcal Total: -34.01 1.06 -32.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_4549636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.610 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds