Wall clock time and date at job start Sun Mar 7 2021 01:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47030 * 2 1 4 4 C 1.50696 * 109.47278 * 239.99675 * 2 1 3 5 5 C 1.38268 * 119.94238 * 119.72540 * 4 2 1 6 6 C 1.38148 * 120.05255 * 179.72402 * 5 4 2 7 7 C 1.38731 * 119.94303 * 0.55323 * 6 5 4 8 8 O 1.35900 * 120.05280 * 179.74897 * 7 6 5 9 9 C 1.42897 * 117.00207 * 359.97334 * 8 7 6 10 10 F 1.39900 * 109.47173 * 300.00245 * 9 8 7 11 11 F 1.39905 * 109.47121 * 60.00234 * 9 8 7 12 12 C 1.50703 * 109.47158 * 180.02562 * 9 8 7 13 13 O 1.21281 * 119.99805 * 359.97438 * 12 9 8 14 14 N 1.34776 * 119.99874 * 180.02562 * 12 9 8 15 15 C 1.46506 * 119.99725 * 179.97438 * 14 12 9 16 16 H 1.08997 * 112.85069 * 336.18901 * 15 14 12 17 17 C 1.53774 * 113.61546 * 107.50026 * 15 14 12 18 18 C 1.53784 * 87.08381 * 89.11290 * 17 15 14 19 19 H 1.08998 * 113.68957 * 270.87230 * 18 17 15 20 20 C 1.50702 * 113.61579 * 139.98050 * 18 17 15 21 21 C 1.38217 * 119.99598 * 142.50129 * 20 18 17 22 22 C 1.38262 * 120.02008 * 180.02562 * 21 20 18 23 23 C 1.38198 * 120.00832 * 359.95491 * 22 21 20 24 24 C 1.38347 * 119.99264 * 0.02676 * 23 22 21 25 25 Br 1.89098 * 120.00963 * 180.02562 * 24 23 22 26 26 C 1.38237 * 119.99253 * 322.23117 * 20 18 17 27 27 C 1.53775 * 87.07881 * 25.43074 * 18 17 15 28 28 C 1.38728 * 119.89302 * 359.72113 * 7 6 5 29 29 C 1.38154 * 119.93919 * 0.02562 * 28 7 6 30 30 H 0.96700 * 114.00022 * 300.00827 * 1 2 3 31 31 H 1.08997 * 109.46978 * 119.99554 * 2 1 3 32 32 H 1.48506 * 110.00048 * 178.68200 * 3 2 1 33 33 H 1.48502 * 109.99996 * 299.99525 * 3 2 1 34 34 H 1.07998 * 119.97204 * 359.97438 * 5 4 2 35 35 H 1.08003 * 120.02568 * 180.27470 * 6 5 4 36 36 H 0.97000 * 120.00502 * 359.97438 * 14 12 9 37 37 H 1.09000 * 113.61365 * 203.66504 * 17 15 14 38 38 H 1.09002 * 113.61760 * 334.56259 * 17 15 14 39 39 H 1.08003 * 119.98882 * 359.97438 * 21 20 18 40 40 H 1.07996 * 119.99459 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.99856 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.00836 * 0.02562 * 26 20 18 43 43 H 1.08998 * 113.61719 * 220.01768 * 27 18 17 44 44 H 1.09002 * 113.68675 * 89.12854 * 27 18 17 45 45 H 1.07990 * 120.03336 * 179.97438 * 28 7 6 46 46 H 1.07997 * 119.96817 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7216 -0.0357 -2.1426 6 6 3.1880 -0.6864 -3.2684 7 6 2.8536 -2.0146 -3.4891 8 8 3.3070 -2.6554 -4.5984 9 6 4.1235 -1.9003 -5.4957 10 9 3.4023 -0.7978 -5.9667 11 9 5.2676 -1.4565 -4.8239 12 6 4.5284 -2.7691 -6.6585 13 8 4.1550 -3.9217 -6.7132 14 7 5.3063 -2.2656 -7.6372 15 6 5.7004 -3.1105 -8.7673 16 1 5.6755 -4.1740 -8.5297 17 6 4.9859 -2.7541 -10.0815 18 6 6.1361 -1.7688 -10.3482 19 1 5.9630 -0.7729 -9.9402 20 6 6.5869 -1.7419 -11.7859 21 6 6.9610 -0.5467 -12.3706 22 6 7.3742 -0.5215 -13.6898 23 6 7.4144 -1.6916 -14.4240 24 6 7.0404 -2.8882 -13.8391 25 35 7.0958 -4.4897 -14.8431 26 6 6.6317 -2.9137 -12.5180 27 6 7.0050 -2.6614 -9.4466 28 6 2.0559 -2.6877 -2.5752 29 6 1.5963 -2.0340 -1.4482 30 1 -0.3933 0.4418 0.7650 31 1 1.7923 -0.5138 0.8900 32 1 3.5346 1.7703 0.0321 33 1 1.5616 2.4679 -1.2086 34 1 2.9776 0.9996 -1.9728 35 1 3.8089 -0.1603 -3.9785 36 1 5.6053 -1.3439 -7.5933 37 1 4.9435 -3.5787 -10.7930 38 1 4.0205 -2.2693 -9.9361 39 1 6.9297 0.3679 -11.7971 40 1 7.6660 0.4127 -14.1463 41 1 7.7368 -1.6716 -15.4546 42 1 6.3432 -3.8482 -12.0599 43 1 7.6697 -2.1018 -8.7885 44 1 7.5155 -3.4610 -9.9833 45 1 1.7938 -3.7215 -2.7449 46 1 0.9750 -2.5575 -0.7367 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_4549640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:41:56 Heat of formation + Delta-G solvation = -100.377340 kcal Electronic energy + Delta-G solvation = -35304.972010 eV Core-core repulsion = 30038.114183 eV Total energy + Delta-G solvation = -5266.857827 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 454.042 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -51.01241 -48.98388 -41.90329 -41.47401 -40.66582 -39.40203 -38.91952 -37.30638 -35.14911 -33.36051 -32.65314 -32.24737 -31.92645 -30.26685 -29.22913 -26.81563 -26.64435 -26.01315 -24.70713 -23.63764 -22.93263 -22.53641 -22.45127 -20.78822 -20.50122 -19.80978 -19.76740 -18.43028 -18.32544 -17.99727 -17.46851 -17.11960 -16.73628 -16.54675 -16.51636 -16.33727 -16.15924 -15.89545 -15.84030 -15.51217 -15.39999 -15.23549 -15.17889 -15.05107 -14.78641 -14.56143 -14.53280 -14.43226 -14.33353 -14.00172 -13.73391 -13.62939 -13.52359 -13.25254 -13.01170 -12.58598 -12.42514 -12.26739 -12.12845 -12.00244 -11.96399 -11.67674 -11.61622 -11.38560 -11.26335 -10.56923 -10.37466 -10.33005 -9.86413 -9.67612 -9.64321 -4.96724 -0.12294 -0.01505 0.08642 0.24623 0.34199 0.52767 0.62546 1.28240 1.55321 1.62013 1.88540 1.94831 2.30325 2.55050 2.65508 3.10162 3.26608 3.29641 3.40396 3.51438 3.51586 3.57067 3.78568 3.81970 3.86845 3.92491 4.02300 4.09124 4.17201 4.24684 4.25171 4.37912 4.41196 4.45469 4.55818 4.66915 4.67014 4.69010 4.76985 4.81983 4.87460 4.91559 4.94948 4.95760 5.17167 5.20356 5.23910 5.27319 5.37819 5.53077 5.68187 5.75702 5.82325 6.37045 6.91378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.074 4.074 3 Si 0.770 3.230 4 C -0.109 4.109 5 C -0.100 4.100 6 C -0.193 4.193 7 C 0.086 3.914 8 O -0.301 6.301 9 C 0.432 3.568 10 F -0.173 7.173 11 F -0.172 7.172 12 C 0.521 3.479 13 O -0.503 6.503 14 N -0.668 5.668 15 C 0.111 3.889 16 H 0.103 0.897 17 C -0.143 4.143 18 C -0.068 4.068 19 H 0.120 0.880 20 C -0.068 4.068 21 C -0.102 4.102 22 C -0.115 4.115 23 C -0.108 4.108 24 C -0.103 4.103 25 Br -0.062 7.062 26 C -0.097 4.097 27 C -0.122 4.122 28 C -0.130 4.130 29 C -0.053 4.053 30 H 0.405 0.595 31 H 0.102 0.898 32 H -0.287 1.287 33 H -0.299 1.299 34 H 0.127 0.873 35 H 0.139 0.861 36 H 0.424 0.576 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.155 0.845 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.673 5.696 3.577 6.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.184 4.184 3 Si 0.677 3.323 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.211 4.211 7 C 0.043 3.957 8 O -0.218 6.218 9 C 0.355 3.645 10 F -0.154 7.154 11 F -0.153 7.153 12 C 0.300 3.700 13 O -0.376 6.376 14 N -0.321 5.321 15 C 0.007 3.993 16 H 0.121 0.879 17 C -0.182 4.182 18 C -0.086 4.086 19 H 0.138 0.862 20 C -0.069 4.069 21 C -0.121 4.121 22 C -0.133 4.133 23 C -0.128 4.128 24 C -0.182 4.182 25 Br 0.023 6.977 26 C -0.117 4.117 27 C -0.160 4.160 28 C -0.148 4.148 29 C -0.071 4.071 30 H 0.257 0.743 31 H 0.120 0.880 32 H -0.215 1.215 33 H -0.227 1.227 34 H 0.145 0.855 35 H 0.157 0.843 36 H 0.262 0.738 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.114 0.886 44 H 0.126 0.874 45 H 0.172 0.828 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.975 4.372 2.137 5.251 hybrid contribution 0.326 0.536 -0.370 0.729 sum 2.301 4.908 1.767 5.701 Atomic orbital electron populations 1.86437 1.16924 1.82401 1.51538 1.24731 0.86088 1.10657 0.96898 0.94406 0.77381 0.75691 0.84864 1.19806 0.99057 0.95198 0.96870 1.20828 0.98095 0.99152 0.93717 1.21501 1.04933 0.93744 1.00934 1.19180 0.97506 0.92059 0.86929 1.86643 1.63933 1.39089 1.32138 1.21860 0.76710 0.79493 0.86472 1.93195 1.78216 1.55550 1.88445 1.93196 1.50629 1.89835 1.81632 1.19293 0.81025 0.87057 0.82674 1.90862 1.53330 1.17139 1.76279 1.45409 1.48926 1.17031 1.20731 1.22163 0.97325 0.95659 0.84170 0.87935 1.23600 0.98347 1.00068 0.96142 1.21689 0.96084 1.00293 0.90516 0.86165 1.19792 0.98760 0.92543 0.95798 1.21538 0.96877 0.98483 0.95163 1.21480 0.98888 0.98392 0.94580 1.21355 0.98999 0.91400 1.01018 1.21944 1.07799 0.92391 0.96082 1.96769 1.97833 1.30750 1.72332 1.21101 0.98937 0.99664 0.91970 1.23415 0.94994 1.00198 0.97387 1.20827 0.98568 1.01972 0.93445 1.21152 0.96538 0.93382 0.96035 0.74331 0.87995 1.21450 1.22670 0.85546 0.84308 0.73775 0.87948 0.90716 0.83188 0.83185 0.84606 0.84411 0.88611 0.87448 0.82760 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.84 12.74 -148.98 -1.90 -1.05 16 2 C -0.07 0.11 2.81 71.23 0.20 0.31 16 3 Si 0.77 -1.84 29.78 68.60 2.04 0.20 16 4 C -0.11 -0.52 5.42 -19.85 -0.11 -0.63 16 5 C -0.10 -0.69 8.66 22.26 0.19 -0.49 16 6 C -0.19 -1.51 8.26 22.37 0.18 -1.33 16 7 C 0.09 0.77 6.48 22.50 0.15 0.91 16 8 O -0.30 -3.04 9.60 -73.39 -0.70 -3.74 16 9 C 0.43 2.37 2.05 71.24 0.15 2.51 16 10 F -0.17 -0.74 15.29 44.97 0.69 -0.05 16 11 F -0.17 -0.66 15.29 44.97 0.69 0.02 16 12 C 0.52 2.41 7.34 87.66 0.64 3.06 16 13 O -0.50 -5.96 16.10 16.01 0.26 -5.70 16 14 N -0.67 2.11 5.26 -440.04 -2.32 -0.20 16 15 C 0.11 -0.46 4.32 45.51 0.20 -0.27 16 16 H 0.10 -0.09 7.46 -2.39 -0.02 -0.11 16 17 C -0.14 0.70 7.25 31.12 0.23 0.93 16 18 C -0.07 0.51 3.86 -11.01 -0.04 0.47 16 19 H 0.12 -1.29 8.09 -2.39 -0.02 -1.31 16 20 C -0.07 0.26 5.29 -19.87 -0.11 0.16 16 21 C -0.10 0.47 9.71 22.27 0.22 0.68 16 22 C -0.11 0.36 10.05 22.27 0.22 0.59 16 23 C -0.11 0.02 9.79 22.29 0.22 0.24 16 24 C -0.10 -0.15 6.22 22.31 0.14 -0.01 16 25 Br -0.06 -0.18 33.70 -20.37 -0.69 -0.87 16 26 C -0.10 0.11 8.34 22.29 0.19 0.29 16 27 C -0.12 0.98 7.29 31.12 0.23 1.21 16 28 C -0.13 -0.76 9.99 22.37 0.22 -0.54 16 29 C -0.05 -0.20 9.60 22.26 0.21 0.01 16 30 H 0.41 -4.90 8.74 -74.06 -0.65 -5.54 16 31 H 0.10 -0.64 7.96 -2.39 -0.02 -0.66 16 32 H -0.29 -0.83 7.11 99.48 0.71 -0.13 16 33 H -0.30 -1.67 7.11 99.48 0.71 -0.96 16 34 H 0.13 0.67 4.87 -2.91 -0.01 0.66 16 35 H 0.14 0.81 5.10 -2.91 -0.01 0.80 16 36 H 0.42 -3.68 8.70 -92.71 -0.81 -4.49 16 37 H 0.10 -0.48 6.32 -2.39 -0.02 -0.50 16 38 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.15 -1.38 8.05 -2.91 -0.02 -1.40 16 40 H 0.15 -1.09 8.06 -2.91 -0.02 -1.11 16 41 H 0.14 -0.23 8.06 -2.91 -0.02 -0.26 16 42 H 0.14 -0.39 6.67 -2.91 -0.02 -0.41 16 43 H 0.10 -0.95 8.14 -2.39 -0.02 -0.97 16 44 H 0.11 -0.83 7.72 -2.39 -0.02 -0.85 16 45 H 0.15 0.41 8.06 -2.92 -0.02 0.39 16 46 H 0.16 -0.14 8.06 -2.91 -0.02 -0.16 16 Total: 0.00 -21.63 412.95 1.06 -20.56 By element: Atomic # 1 Polarization: -16.94 SS G_CDS: -0.33 Total: -17.27 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 3.33 Total: 8.10 kcal Atomic # 7 Polarization: 2.11 SS G_CDS: -2.32 Total: -0.20 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -2.35 Total: -10.50 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 1.38 Total: -0.03 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: 2.04 Total: 0.20 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -0.69 Total: -0.87 kcal Total: -21.63 1.06 -20.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_4549640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.813 kcal (2) G-P(sol) polarization free energy of solvation -21.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds