Wall clock time and date at job start Sun Mar 7 2021 01:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.47045 * 2 1 4 4 C 1.50695 * 109.47293 * 120.00291 * 2 1 3 5 5 C 1.35453 * 125.56434 * 244.97827 * 4 2 1 6 6 C 1.39828 * 107.86576 * 180.02562 * 5 4 2 7 7 C 1.37870 * 107.08722 * 359.75451 * 6 5 4 8 8 C 1.46684 * 126.23813 * 180.23386 * 7 6 5 9 9 O 1.21690 * 119.99554 * 0.18180 * 8 7 6 10 10 N 1.34767 * 120.00098 * 180.17546 * 8 7 6 11 11 C 1.46504 * 120.00027 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.84766 * 336.20264 * 11 10 8 13 13 C 1.53782 * 113.61361 * 107.50519 * 11 10 8 14 14 C 1.53778 * 87.08083 * 89.11931 * 13 11 10 15 15 H 1.09004 * 113.69255 * 270.87416 * 14 13 11 16 16 C 1.50700 * 113.61433 * 139.98307 * 14 13 11 17 17 C 1.38216 * 119.99486 * 142.50477 * 16 14 13 18 18 C 1.38269 * 120.02093 * 180.02562 * 17 16 14 19 19 C 1.38196 * 120.00974 * 359.95462 * 18 17 16 20 20 C 1.38352 * 119.98465 * 0.02562 * 19 18 17 21 21 Br 1.89100 * 120.00538 * 180.02562 * 20 19 18 22 22 C 1.38236 * 119.99490 * 322.22407 * 16 14 13 23 23 C 1.53777 * 113.61796 * 205.00462 * 11 10 8 24 24 N 1.35537 * 125.56451 * 64.99901 * 4 2 1 25 25 H 0.96700 * 114.00083 * 300.00170 * 1 2 3 26 26 H 1.09008 * 109.46794 * 240.00092 * 2 1 3 27 27 H 1.48503 * 109.99952 * 300.00014 * 3 2 1 28 28 H 1.48499 * 109.99764 * 61.31972 * 3 2 1 29 29 H 1.08003 * 126.06719 * 359.97438 * 5 4 2 30 30 H 1.08007 * 126.45721 * 180.02562 * 6 5 4 31 31 H 0.97005 * 120.00219 * 0.02562 * 10 8 7 32 32 H 1.08997 * 113.61555 * 203.66891 * 13 11 10 33 33 H 1.09001 * 113.61393 * 334.56735 * 13 11 10 34 34 H 1.08005 * 119.99131 * 359.97438 * 17 16 14 35 35 H 1.08000 * 119.99286 * 179.97438 * 18 17 16 36 36 H 1.07996 * 120.00500 * 180.02562 * 19 18 17 37 37 H 1.08003 * 120.00346 * 0.02562 * 22 16 14 38 38 H 1.09002 * 113.61227 * 25.42801 * 23 11 10 39 39 H 1.09001 * 113.61648 * 156.25479 * 23 11 10 40 40 H 0.97001 * 125.67560 * 359.95296 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6334 -0.1395 2.2383 6 6 2.9085 -1.1312 3.1849 7 6 2.3493 -2.3021 2.7191 8 6 2.3845 -3.6065 3.3892 9 8 2.9447 -3.7238 4.4631 10 7 1.7963 -4.6748 2.8157 11 6 1.8319 -5.9777 3.4848 12 1 2.6649 -6.0731 4.1813 13 6 0.4784 -6.4026 4.0782 14 6 0.1739 -7.0503 2.7171 15 1 -0.3061 -6.3754 2.0084 16 6 -0.5263 -8.3804 2.8246 17 6 -1.5048 -8.7221 1.9102 18 6 -2.1480 -9.9421 2.0087 19 6 -1.8121 -10.8208 3.0210 20 6 -0.8324 -10.4793 3.9363 21 35 -0.3718 -11.6816 5.3213 22 6 -0.1858 -9.2610 3.8344 23 6 1.6947 -7.1687 2.5218 24 7 1.7549 -2.0251 1.5089 25 1 -0.3933 0.4417 0.7650 26 1 1.7923 -0.5139 -0.8901 27 1 1.5615 2.4679 -1.2085 28 1 1.5879 2.4585 1.2243 29 1 2.9290 0.8975 2.2995 30 1 3.4523 -1.0030 4.1092 31 1 1.3500 -4.5813 1.9595 32 1 0.5653 -7.1205 4.8937 33 1 -0.1754 -5.5643 4.3189 34 1 -1.7677 -8.0355 1.1189 35 1 -2.9128 -10.2084 1.2941 36 1 -2.3142 -11.7739 3.0976 37 1 0.5817 -8.9956 4.5464 38 1 2.0228 -6.9488 1.5058 39 1 2.1154 -8.0958 2.9112 40 1 1.2843 -2.6635 0.9503 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14189268_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:42:53 Heat of formation + Delta-G solvation = 34.375699 kcal Electronic energy + Delta-G solvation = -24776.044209 eV Core-core repulsion = 20990.957704 eV Total energy + Delta-G solvation = -3785.086505 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.041 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.59147 -41.59191 -40.17750 -38.82025 -37.91058 -34.82354 -33.39925 -32.36734 -31.89494 -31.24171 -30.29000 -27.34036 -26.91476 -26.12311 -23.94275 -23.27335 -22.55081 -21.66241 -21.17566 -20.30927 -19.93777 -18.40899 -18.05541 -17.21164 -16.77339 -16.63756 -16.43195 -16.19238 -16.01095 -15.36451 -15.32919 -15.18406 -14.93182 -14.64190 -14.48256 -14.43839 -14.32246 -14.00446 -13.69065 -13.67046 -13.49895 -13.02975 -12.52561 -12.40136 -12.11753 -12.04569 -11.94204 -11.64554 -11.42724 -11.26657 -11.24208 -10.91559 -10.27516 -10.11832 -9.93386 -9.69836 -9.31762 -5.01210 0.01470 0.16176 0.31353 0.62020 1.06885 1.51751 1.55910 1.78488 1.90041 2.09758 2.32497 2.46484 3.15392 3.23853 3.43773 3.48835 3.50441 3.65872 3.73571 3.77929 3.90121 4.00686 4.13808 4.17501 4.23144 4.28034 4.36652 4.42990 4.52340 4.55512 4.66998 4.77172 4.80874 4.84009 4.93067 4.97085 5.05380 5.11635 5.22558 5.34636 5.44358 5.55581 5.70397 5.78524 6.14016 6.18655 6.35711 7.06406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.062 4.062 3 Si 0.718 3.282 4 C 0.024 3.976 5 C -0.199 4.199 6 C -0.096 4.096 7 C -0.051 4.051 8 C 0.593 3.407 9 O -0.520 6.520 10 N -0.715 5.715 11 C 0.121 3.879 12 H 0.111 0.889 13 C -0.144 4.144 14 C -0.074 4.074 15 H 0.099 0.901 16 C -0.066 4.066 17 C -0.101 4.101 18 C -0.110 4.110 19 C -0.095 4.095 20 C -0.087 4.087 21 Br -0.048 7.048 22 C -0.088 4.088 23 C -0.135 4.135 24 N -0.524 5.524 25 H 0.381 0.619 26 H 0.119 0.881 27 H -0.256 1.256 28 H -0.255 1.255 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.395 0.605 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.322 1.083 -4.641 4.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.171 4.171 3 Si 0.617 3.383 4 C -0.094 4.094 5 C -0.224 4.224 6 C -0.123 4.123 7 C -0.165 4.165 8 C 0.381 3.619 9 O -0.395 6.395 10 N -0.366 5.366 11 C 0.016 3.984 12 H 0.129 0.871 13 C -0.183 4.183 14 C -0.092 4.092 15 H 0.117 0.883 16 C -0.067 4.067 17 C -0.120 4.120 18 C -0.129 4.129 19 C -0.115 4.115 20 C -0.166 4.166 21 Br 0.038 6.962 22 C -0.108 4.108 23 C -0.173 4.173 24 N -0.120 5.120 25 H 0.229 0.771 26 H 0.137 0.863 27 H -0.180 1.180 28 H -0.179 1.179 29 H 0.169 0.831 30 H 0.171 0.829 31 H 0.228 0.772 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.069 0.913 -3.934 4.039 hybrid contribution -1.782 -0.417 -0.525 1.903 sum -1.712 0.496 -4.459 4.802 Atomic orbital electron populations 1.86597 1.17552 1.80234 1.49695 1.24903 0.84054 1.11881 0.96246 0.94214 0.91419 0.72116 0.80572 1.21093 1.04632 0.84186 0.99454 1.20746 1.05953 1.00330 0.95333 1.21346 1.00647 0.90080 1.00211 1.20435 1.09922 0.95885 0.90213 1.17042 0.78170 0.82062 0.84614 1.90881 1.43827 1.84158 1.20641 1.45553 1.57970 1.08823 1.24286 1.21866 0.99297 0.81613 0.95637 0.87148 1.23588 0.97199 1.00979 0.96518 1.21619 0.95171 0.93435 0.98988 0.88299 1.19666 0.96596 0.95457 0.94979 1.21216 0.95476 0.96786 0.98483 1.21209 0.99875 0.93816 0.98004 1.21180 0.96122 1.00289 0.93880 1.21835 1.01507 0.95952 0.97336 1.96794 1.92754 1.59867 1.46824 1.20971 0.99445 0.91967 0.98420 1.23447 0.94703 0.98673 1.00514 1.41949 1.43273 1.09371 1.17448 0.77113 0.86283 1.18033 1.17877 0.83128 0.82889 0.77170 0.88402 0.90481 0.85430 0.84941 0.84916 0.84830 0.90351 0.88056 0.74682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.46 12.88 -35.23 -0.45 0.01 16 2 C -0.06 0.14 3.08 36.00 0.11 0.25 16 3 Si 0.72 -1.83 30.56 -169.99 -5.19 -7.02 16 4 C 0.02 -0.03 6.47 -81.95 -0.53 -0.56 16 5 C -0.20 0.10 9.32 -39.98 -0.37 -0.28 16 6 C -0.10 -0.12 10.65 -39.12 -0.42 -0.53 16 7 C -0.05 -0.04 7.06 -81.98 -0.58 -0.62 16 8 C 0.59 1.15 7.79 -12.86 -0.10 1.05 16 9 O -0.52 -3.03 16.48 5.20 0.09 -2.94 16 10 N -0.72 0.94 5.26 -54.32 -0.29 0.65 16 11 C 0.12 -0.14 4.32 -67.12 -0.29 -0.44 16 12 H 0.11 0.06 7.46 -51.93 -0.39 -0.33 16 13 C -0.14 0.22 7.25 -25.92 -0.19 0.03 16 14 C -0.07 0.19 3.86 -90.96 -0.35 -0.16 16 15 H 0.10 -0.36 8.09 -51.93 -0.42 -0.78 16 16 C -0.07 0.06 5.29 -104.63 -0.55 -0.49 16 17 C -0.10 0.12 9.71 -39.58 -0.38 -0.26 16 18 C -0.11 0.10 10.05 -39.59 -0.40 -0.30 16 19 C -0.09 -0.01 9.79 -39.55 -0.39 -0.40 16 20 C -0.09 -0.07 6.22 -39.52 -0.25 -0.32 16 21 Br -0.05 -0.06 33.70 -68.01 -2.29 -2.35 16 22 C -0.09 0.01 8.34 -39.56 -0.33 -0.32 16 23 C -0.14 0.37 7.29 -25.92 -0.19 0.18 16 24 N -0.52 0.81 5.99 -5.69 -0.03 0.77 16 25 H 0.38 -1.22 8.70 45.56 0.40 -0.83 16 26 H 0.12 -0.39 7.96 -51.92 -0.41 -0.80 16 27 H -0.26 -0.17 7.11 56.52 0.40 0.23 16 28 H -0.25 0.10 7.11 56.52 0.40 0.50 16 29 H 0.15 -0.34 6.19 -52.48 -0.32 -0.66 16 30 H 0.15 0.16 8.06 -52.48 -0.42 -0.27 16 31 H 0.39 -1.55 7.83 -40.82 -0.32 -1.87 16 32 H 0.10 -0.15 6.32 -51.93 -0.33 -0.48 16 33 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 34 H 0.13 -0.39 8.05 -52.48 -0.42 -0.81 16 35 H 0.13 -0.37 8.06 -52.49 -0.42 -0.79 16 36 H 0.13 -0.12 8.06 -52.49 -0.42 -0.55 16 37 H 0.13 -0.13 6.67 -52.48 -0.35 -0.48 16 38 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 39 H 0.10 -0.26 7.72 -51.93 -0.40 -0.66 16 40 H 0.42 -1.63 8.19 -40.82 -0.33 -1.97 16 LS Contribution 359.22 15.07 5.41 5.41 Total: 0.00 -7.76 359.22 -12.58 -20.34 By element: Atomic # 1 Polarization: -7.06 SS G_CDS: -4.62 Total: -11.68 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -5.20 Total: -3.18 kcal Atomic # 7 Polarization: 1.74 SS G_CDS: -0.32 Total: 1.42 kcal Atomic # 8 Polarization: -2.57 SS G_CDS: -0.37 Total: -2.94 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: -5.19 Total: -7.02 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -2.29 Total: -2.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -7.76 -12.58 -20.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.713 kcal (2) G-P(sol) polarization free energy of solvation -7.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds