Wall clock time and date at job start Sun Mar 7 2021 01:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33817 * 122.45162 * 2 1 4 4 C 1.50697 * 124.52076 * 0.02562 * 3 2 1 5 5 O 1.42903 * 109.47441 * 314.93499 * 4 3 2 6 6 Si 1.86299 * 109.47104 * 194.93270 * 4 3 2 7 7 S 1.70608 * 110.95371 * 179.70137 * 3 2 1 8 8 C 1.75833 * 91.56587 * 0.35024 * 7 3 2 9 9 C 1.46583 * 125.45710 * 179.91006 * 8 7 3 10 10 O 1.21699 * 119.99706 * 179.69695 * 9 8 7 11 11 N 1.34774 * 120.00371 * 359.70393 * 9 8 7 12 12 C 1.46496 * 120.00328 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.84793 * 23.79742 * 12 11 9 14 14 C 1.53775 * 113.61780 * 154.99519 * 12 11 9 15 15 C 1.53778 * 87.08200 * 89.11694 * 14 12 11 16 16 H 1.09005 * 113.61264 * 270.80370 * 15 14 12 17 17 C 1.50699 * 113.61791 * 139.98070 * 15 14 12 18 18 C 1.38202 * 119.99130 * 119.99733 * 17 15 14 19 19 C 1.38351 * 119.98276 * 180.02562 * 18 17 15 20 20 Br 1.89103 * 120.00533 * 179.97438 * 19 18 17 21 21 C 1.38295 * 119.98262 * 0.25164 * 19 18 17 22 22 C 1.38237 * 119.99033 * 359.51716 * 21 19 18 23 23 C 1.38218 * 120.01175 * 0.48636 * 22 21 19 24 24 C 1.53776 * 87.08123 * 25.43399 * 15 14 12 25 25 C 1.36647 * 109.08067 * 359.65626 * 8 7 3 26 26 H 1.08999 * 109.47674 * 275.77970 * 1 2 3 27 27 H 1.09007 * 109.46843 * 35.78066 * 1 2 3 28 28 H 1.09000 * 109.47160 * 155.77780 * 1 2 3 29 29 H 1.09005 * 109.46986 * 74.93225 * 4 3 2 30 30 H 0.96701 * 114.00037 * 180.02562 * 5 4 3 31 31 H 1.48497 * 110.00103 * 60.00287 * 6 4 3 32 32 H 1.48505 * 109.99955 * 181.32339 * 6 4 3 33 33 H 0.97002 * 119.99530 * 359.97438 * 11 9 8 34 34 H 1.09004 * 113.61330 * 334.56509 * 14 12 11 35 35 H 1.09009 * 113.61705 * 203.66438 * 14 12 11 36 36 H 1.07992 * 120.00979 * 0.02562 * 18 17 15 37 37 H 1.08001 * 120.00452 * 179.72172 * 21 19 18 38 38 H 1.08003 * 119.99279 * 180.24951 * 22 21 19 39 39 H 1.08000 * 119.99234 * 179.77058 * 23 22 21 40 40 H 1.08999 * 113.61931 * 89.12060 * 24 15 14 41 41 H 1.09008 * 113.61642 * 220.02212 * 24 15 14 42 42 H 1.07995 * 123.34810 * 180.28851 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5161 0.0006 5 8 0.5730 2.5825 -0.9528 6 14 2.9543 3.7516 -0.4523 7 16 3.8968 0.7891 0.0083 8 6 3.5936 -0.9428 0.0011 9 6 4.6231 -1.9863 0.0016 10 8 4.3001 -3.1597 0.0018 11 7 5.9272 -1.6464 0.0021 12 6 6.9561 -2.6893 0.0032 13 1 6.5992 -3.6363 -0.4017 14 6 8.2980 -2.2315 -0.5919 15 6 8.6820 -1.7766 0.8260 16 1 8.3896 -0.7506 1.0496 17 6 10.1160 -2.0682 1.1860 18 6 10.9692 -1.0328 1.5177 19 6 12.2858 -1.3006 1.8476 20 35 13.4540 0.1157 2.3008 21 6 12.7488 -2.6037 1.8403 22 6 11.8934 -3.6391 1.5131 23 6 10.5781 -3.3713 1.1834 24 6 7.6898 -2.8294 1.3475 25 6 2.2445 -1.1601 0.0005 26 1 -0.3634 0.1035 1.0224 27 1 -0.3633 0.8338 -0.6009 28 1 -0.3633 -0.9372 -0.4216 29 1 1.2479 2.7457 0.9931 30 1 0.1466 3.4488 -1.0067 31 1 3.4909 3.4495 -1.8035 32 1 2.3935 5.1264 -0.4241 33 1 6.1846 -0.7112 0.0017 34 1 8.2030 -1.4109 -1.3030 35 1 8.9108 -3.0505 -0.9686 36 1 10.6083 -0.0150 1.5193 37 1 13.7778 -2.8127 2.0935 38 1 12.2539 -4.6572 1.5113 39 1 9.9110 -4.1801 0.9242 40 1 8.1361 -3.8119 1.5011 41 1 7.1036 -2.4914 2.2021 42 1 1.8019 -2.1452 0.0011 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:43:03 Heat of formation + Delta-G solvation = 27.199872 kcal Electronic energy + Delta-G solvation = -26355.079600 eV Core-core repulsion = 22440.496326 eV Total energy + Delta-G solvation = -3914.583274 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.018 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.66644 -40.57565 -39.73672 -38.78649 -37.51420 -34.80026 -33.17581 -32.47621 -31.80565 -30.19079 -30.09054 -27.17635 -26.69426 -25.75573 -24.35178 -23.50038 -22.53200 -21.96646 -20.28243 -19.80588 -19.30085 -18.60595 -18.03211 -17.35391 -17.10256 -16.55336 -16.35998 -16.04042 -15.99121 -15.85696 -15.14763 -15.00637 -14.77865 -14.64615 -14.50122 -14.45682 -14.28060 -14.19795 -13.51816 -13.40086 -13.28341 -13.03281 -13.02461 -12.85159 -12.56620 -12.31300 -12.22722 -12.01311 -11.95460 -11.89009 -11.53293 -11.37982 -11.27904 -11.15058 -10.67416 -10.25394 -9.82545 -9.71733 -9.58707 -9.36958 -5.12810 -0.67436 0.11978 0.26549 0.30493 0.65451 0.66308 1.07222 1.29993 1.53199 1.87497 1.93665 2.04246 2.59690 3.22671 3.43588 3.61779 3.63017 3.66436 3.73894 3.89661 3.97185 4.10829 4.12715 4.14270 4.31505 4.34883 4.39271 4.43959 4.56892 4.62721 4.68156 4.77513 4.78921 4.83859 4.89512 4.95037 4.98843 5.01047 5.03239 5.12079 5.24341 5.37966 5.38647 5.45324 5.46183 5.62889 5.86372 6.31888 6.54772 7.00187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.040 4.040 5 O -0.543 6.543 6 Si 0.720 3.280 7 S 0.259 5.741 8 C -0.286 4.286 9 C 0.595 3.405 10 O -0.569 6.569 11 N -0.697 5.697 12 C 0.113 3.887 13 H 0.092 0.908 14 C -0.125 4.125 15 C -0.067 4.067 16 H 0.113 0.887 17 C -0.066 4.066 18 C -0.096 4.096 19 C -0.103 4.103 20 Br -0.061 7.061 21 C -0.108 4.108 22 C -0.114 4.114 23 C -0.105 4.105 24 C -0.140 4.140 25 C -0.060 4.060 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.399 0.601 31 H -0.280 1.280 32 H -0.254 1.254 33 H 0.411 0.589 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.684 4.232 1.556 4.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.119 4.119 3 C -0.322 4.322 4 C -0.151 4.151 5 O -0.355 6.355 6 Si 0.621 3.379 7 S 0.529 5.471 8 C -0.405 4.405 9 C 0.382 3.618 10 O -0.450 6.450 11 N -0.348 5.348 12 C 0.007 3.993 13 H 0.110 0.890 14 C -0.163 4.163 15 C -0.085 4.085 16 H 0.131 0.869 17 C -0.067 4.067 18 C -0.116 4.116 19 C -0.182 4.182 20 Br 0.024 6.976 21 C -0.128 4.128 22 C -0.133 4.133 23 C -0.123 4.123 24 C -0.179 4.179 25 C -0.094 4.094 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.129 0.871 30 H 0.251 0.749 31 H -0.207 1.207 32 H -0.178 1.178 33 H 0.248 0.752 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.678 4.881 1.090 5.673 hybrid contribution -2.541 -0.580 -0.473 2.649 sum 0.137 4.301 0.617 4.347 Atomic orbital electron populations 1.20707 0.88528 1.03702 1.03115 1.18791 0.98970 0.90705 1.03416 1.23618 0.99066 0.99241 1.10308 1.24266 0.97112 0.96851 0.96881 1.86530 1.48809 1.38721 1.61395 0.94754 0.81554 0.77379 0.84182 1.82287 1.01386 0.96019 1.67452 1.24626 0.97641 0.98445 1.19827 1.17111 0.82417 0.86985 0.75295 1.90826 1.82293 1.19967 1.51865 1.45432 1.04234 1.10636 1.74462 1.21944 0.87312 0.91790 0.98205 0.89007 1.23414 0.94013 1.02812 0.96029 1.21626 0.89534 1.00661 0.96698 0.86922 1.19816 0.95479 0.92863 0.98521 1.21194 0.91329 1.00593 0.98502 1.21959 0.95199 0.93290 1.07733 1.96758 1.62770 1.45662 1.92391 1.21342 1.01117 0.91026 0.99314 1.21453 0.93560 0.99882 0.98386 1.21443 0.95990 0.96883 0.97998 1.23575 0.96834 1.00391 0.97051 1.20769 0.91451 1.00162 0.97041 0.90704 0.89188 0.91868 0.87070 0.74886 1.20669 1.17814 0.75190 0.89400 0.87466 0.84199 0.84591 0.83255 0.83568 0.87790 0.91142 0.83702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.15 9.74 71.24 0.69 0.54 16 2 C -0.11 -0.39 5.75 -21.05 -0.12 -0.51 16 3 C -0.20 -0.12 5.64 24.68 0.14 0.02 16 4 C -0.04 0.15 2.69 71.23 0.19 0.34 16 5 O -0.54 1.19 10.16 -148.98 -1.51 -0.33 16 6 Si 0.72 -3.55 30.99 68.60 2.13 -1.43 16 7 S 0.26 -0.59 19.36 -56.49 -1.09 -1.68 16 8 C -0.29 -1.22 6.45 24.08 0.16 -1.06 16 9 C 0.59 3.88 7.78 86.42 0.67 4.55 16 10 O -0.57 -8.39 16.44 -4.34 -0.07 -8.46 16 11 N -0.70 0.51 5.26 -444.11 -2.33 -1.83 16 12 C 0.11 -0.22 4.32 45.52 0.20 -0.02 16 13 H 0.09 0.20 7.46 -2.39 -0.02 0.18 16 14 C -0.12 0.78 7.29 31.12 0.23 1.00 16 15 C -0.07 0.40 3.86 -11.02 -0.04 0.36 16 16 H 0.11 -0.93 8.09 -2.38 -0.02 -0.95 16 17 C -0.07 0.20 5.29 -19.87 -0.11 0.09 16 18 C -0.10 0.07 9.45 22.29 0.21 0.28 16 19 C -0.10 -0.15 6.22 22.31 0.14 -0.02 16 20 Br -0.06 -0.15 33.70 -20.37 -0.69 -0.84 16 21 C -0.11 -0.01 9.79 22.28 0.22 0.21 16 22 C -0.11 0.29 10.05 22.26 0.22 0.51 16 23 C -0.11 0.37 8.61 22.27 0.19 0.56 16 24 C -0.14 0.54 7.25 31.12 0.23 0.77 16 25 C -0.06 -0.35 9.78 21.72 0.21 -0.14 16 26 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.09 0.17 5.48 -2.38 -0.01 0.15 16 28 H 0.06 0.09 8.10 -2.39 -0.02 0.07 16 29 H 0.11 -0.90 7.96 -2.38 -0.02 -0.92 16 30 H 0.40 -4.16 8.74 -74.06 -0.65 -4.81 16 31 H -0.28 -0.68 7.11 99.48 0.71 0.03 16 32 H -0.25 0.54 7.11 99.48 0.71 1.25 16 33 H 0.41 -2.48 7.81 -92.71 -0.72 -3.21 16 34 H 0.09 -0.65 8.14 -2.39 -0.02 -0.66 16 35 H 0.11 -0.75 7.72 -2.38 -0.02 -0.77 16 36 H 0.14 -0.45 8.05 -2.91 -0.02 -0.47 16 37 H 0.14 -0.21 8.06 -2.91 -0.02 -0.24 16 38 H 0.15 -0.97 8.06 -2.91 -0.02 -1.00 16 39 H 0.15 -1.04 6.66 -2.91 -0.02 -1.06 16 40 H 0.10 -0.53 6.31 -2.39 -0.02 -0.54 16 41 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 42 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 Total: 0.00 -18.87 381.09 -0.40 -19.27 By element: Atomic # 1 Polarization: -11.94 SS G_CDS: -0.25 Total: -12.19 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 3.43 Total: 7.49 kcal Atomic # 7 Polarization: 0.51 SS G_CDS: -2.33 Total: -1.83 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -1.59 Total: -8.79 kcal Atomic # 14 Polarization: -3.55 SS G_CDS: 2.13 Total: -1.43 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -1.09 Total: -1.68 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.69 Total: -0.84 kcal Total: -18.87 -0.40 -19.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.468 kcal (2) G-P(sol) polarization free energy of solvation -18.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds