Wall clock time and date at job start Sun Mar 7 2021 01:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47147 * 2 1 4 4 C 1.50700 * 109.47393 * 119.99865 * 2 1 3 5 5 C 1.32770 * 124.70667 * 65.00160 * 4 2 1 6 6 C 1.44429 * 113.07854 * 179.97438 * 5 4 2 7 7 C 1.47194 * 123.45578 * 179.97438 * 6 5 4 8 8 O 1.21633 * 120.00299 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99602 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00232 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84658 * 336.19803 * 10 9 7 12 12 C 1.53952 * 113.61371 * 107.46365 * 10 9 7 13 13 C 1.53787 * 87.01797 * 89.20376 * 12 10 9 14 14 H 1.09003 * 113.61199 * 270.76816 * 13 12 10 15 15 C 1.50698 * 113.61270 * 139.95021 * 13 12 10 16 16 C 1.38219 * 119.99897 * 321.12282 * 15 13 12 17 17 C 1.38270 * 120.02033 * 180.29778 * 16 15 13 18 18 C 1.38194 * 120.00827 * 359.72234 * 17 16 15 19 19 C 1.38346 * 119.99293 * 359.97438 * 18 17 16 20 20 Br 1.89101 * 120.01208 * 180.02562 * 19 18 17 21 21 C 1.38243 * 119.99141 * 140.86021 * 15 13 12 22 22 C 1.53776 * 87.17220 * 25.36244 * 13 12 10 23 23 C 1.36009 * 113.07987 * 0.26895 * 6 5 4 24 24 S 1.70445 * 110.81611 * 359.58908 * 23 6 5 25 25 H 0.96696 * 114.00545 * 299.99829 * 1 2 3 26 26 H 1.08995 * 109.47236 * 240.00340 * 2 1 3 27 27 H 1.48503 * 110.00153 * 300.00300 * 3 2 1 28 28 H 1.48501 * 110.00129 * 61.31734 * 3 2 1 29 29 H 1.07997 * 123.46296 * 0.02562 * 5 4 2 30 30 H 0.97001 * 120.00428 * 0.02562 * 9 7 6 31 31 H 1.09007 * 113.66868 * 334.67730 * 12 10 9 32 32 H 1.09005 * 113.61845 * 203.72136 * 12 10 9 33 33 H 1.07998 * 119.99200 * 359.97438 * 16 15 13 34 34 H 1.07992 * 119.99070 * 179.69648 * 17 16 15 35 35 H 1.08005 * 120.00287 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.00880 * 359.97438 * 21 15 13 37 37 H 1.09000 * 113.61637 * 89.15729 * 22 13 12 38 38 H 1.09002 * 113.61586 * 220.06057 * 22 13 12 39 39 H 1.07998 * 124.58943 * 179.71517 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7485 -2.0003 1.4863 6 6 2.3366 -2.4183 2.7374 7 6 2.2697 -3.7985 3.2446 8 8 1.6958 -4.6559 2.6004 9 7 2.8433 -4.1118 4.4232 10 6 2.7763 -5.4853 4.9283 11 1 1.9346 -6.0455 4.5209 12 6 4.1167 -6.2382 4.8476 13 6 4.4213 -5.6827 6.2489 14 1 4.9226 -4.7149 6.2354 15 6 5.0937 -6.6774 7.1595 16 6 4.7102 -8.0052 7.1360 17 6 5.3226 -8.9171 7.9757 18 6 6.3224 -8.5024 8.8349 19 6 6.7109 -7.1748 8.8544 20 35 8.0795 -6.6069 10.0294 21 6 6.0978 -6.2629 8.0145 22 6 2.9008 -5.5861 6.4578 23 6 2.9531 -1.4042 3.4019 24 16 2.8400 0.0523 2.5239 25 1 -0.3934 0.4416 0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 1.5614 2.4679 -1.2085 28 1 1.5878 2.4586 1.2242 29 1 1.2155 -2.6686 0.8262 30 1 3.3000 -3.4277 4.9375 31 1 4.7848 -5.8605 4.0734 32 1 4.0078 -7.3225 4.8219 33 1 3.9284 -8.3294 6.4652 34 1 5.0192 -9.9534 7.9604 35 1 6.8004 -9.2148 9.4911 36 1 6.4006 -5.2263 8.0296 37 1 2.4587 -6.4917 6.8731 38 1 2.5886 -4.6827 6.9817 39 1 3.4490 -1.5083 4.3556 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14189268_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:43:07 Heat of formation + Delta-G solvation = 21.480034 kcal Electronic energy + Delta-G solvation = -24285.199657 eV Core-core repulsion = 20525.905971 eV Total energy + Delta-G solvation = -3759.293686 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.003 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.75005 -40.59519 -39.26146 -38.58888 -37.15447 -34.75786 -33.22768 -32.35928 -31.52185 -30.14562 -27.04497 -26.88237 -26.80467 -25.33890 -23.63426 -22.71182 -22.14707 -20.61404 -20.23773 -18.98441 -18.39644 -17.95682 -17.70390 -17.04971 -16.50820 -16.46499 -16.28593 -15.93629 -15.72954 -15.40184 -15.18656 -14.81020 -14.60157 -14.48644 -14.31482 -14.07418 -13.85020 -13.63116 -13.61200 -13.38014 -12.99729 -12.72173 -12.44262 -12.42678 -12.07969 -12.05348 -11.85487 -11.62271 -11.43835 -11.19981 -10.96845 -10.76945 -10.20208 -10.06233 -9.92917 -9.67049 -9.56358 -5.14755 -0.42150 0.02728 0.19312 0.28754 0.62814 0.63502 0.85809 1.13983 1.46911 1.83334 1.99523 2.29988 2.48604 3.21091 3.28098 3.46641 3.48363 3.55023 3.72228 3.77096 3.80874 3.90518 3.93940 3.98484 4.16738 4.22417 4.31198 4.42301 4.50028 4.54463 4.58403 4.65384 4.70787 4.79690 4.84194 4.87840 4.95315 5.02177 5.13569 5.16953 5.26197 5.38821 5.51584 5.72611 6.26289 6.38195 7.15752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.522 6.522 2 C -0.033 4.033 3 Si 0.649 3.351 4 C -0.241 4.241 5 C -0.053 4.053 6 C -0.155 4.155 7 C 0.581 3.419 8 O -0.528 6.528 9 N -0.710 5.710 10 C 0.121 3.879 11 H 0.108 0.892 12 C -0.143 4.143 13 C -0.074 4.074 14 H 0.099 0.901 15 C -0.065 4.065 16 C -0.102 4.102 17 C -0.109 4.109 18 C -0.095 4.095 19 C -0.088 4.088 20 Br -0.050 7.050 21 C -0.088 4.088 22 C -0.135 4.135 23 C -0.207 4.207 24 S 0.199 5.801 25 H 0.378 0.622 26 H 0.128 0.872 27 H -0.234 1.234 28 H -0.238 1.238 29 H 0.157 0.843 30 H 0.399 0.601 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 2.341 1.916 3.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.329 6.329 2 C -0.145 4.145 3 Si 0.548 3.452 4 C -0.358 4.358 5 C -0.082 4.082 6 C -0.174 4.174 7 C 0.367 3.633 8 O -0.405 6.405 9 N -0.361 5.361 10 C 0.015 3.985 11 H 0.126 0.874 12 C -0.182 4.182 13 C -0.092 4.092 14 H 0.117 0.883 15 C -0.066 4.066 16 C -0.120 4.120 17 C -0.128 4.128 18 C -0.115 4.115 19 C -0.167 4.167 20 Br 0.036 6.964 21 C -0.108 4.108 22 C -0.173 4.173 23 C -0.345 4.345 24 S 0.465 5.535 25 H 0.226 0.774 26 H 0.146 0.854 27 H -0.157 1.157 28 H -0.162 1.162 29 H 0.174 0.826 30 H 0.234 0.766 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.824 3.953 1.593 5.112 hybrid contribution -1.371 -1.546 0.565 2.142 sum 1.452 2.406 2.157 3.543 Atomic orbital electron populations 1.86649 1.17143 1.79876 1.49203 1.24407 0.83890 1.10079 0.96151 0.95268 0.91827 0.74960 0.83174 1.24748 1.09579 0.98512 1.02957 1.21061 0.97663 0.94438 0.95003 1.20234 1.05810 0.93910 0.97407 1.17606 0.78030 0.87049 0.80587 1.90830 1.42844 1.49675 1.57174 1.45499 1.57680 1.10930 1.21992 1.21887 0.99253 0.82873 0.94460 0.87369 1.23612 0.97341 1.01143 0.96068 1.21619 0.95331 0.97817 0.94467 0.88306 1.19683 0.95885 0.94396 0.96645 1.21181 0.99644 0.92596 0.98578 1.21205 0.95897 1.00210 0.95503 1.21176 0.97250 0.94039 0.99033 1.21844 0.98746 0.96266 0.99845 1.96784 1.47958 1.90538 1.61150 1.21021 0.95598 0.99325 0.94832 1.23440 0.94754 1.03847 0.95270 1.25796 1.04990 0.98602 1.05092 1.83178 1.50290 1.09067 1.10917 0.77448 0.85412 1.15668 1.16226 0.82562 0.76570 0.90446 0.88469 0.85157 0.84892 0.84948 0.85099 0.88133 0.90332 0.81179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.39 12.88 -35.23 -0.45 -0.85 16 2 C -0.03 0.03 2.94 36.01 0.11 0.13 16 3 Si 0.65 -1.13 30.92 -169.99 -5.26 -6.39 16 4 C -0.24 0.12 5.65 -36.18 -0.20 -0.09 16 5 C -0.05 -0.06 9.95 -39.02 -0.39 -0.45 16 6 C -0.16 -0.10 5.98 -104.63 -0.63 -0.72 16 7 C 0.58 1.21 7.79 -12.62 -0.10 1.11 16 8 O -0.53 -3.23 16.40 5.25 0.09 -3.14 16 9 N -0.71 0.82 5.23 -54.07 -0.28 0.54 16 10 C 0.12 -0.15 4.33 -67.03 -0.29 -0.44 16 11 H 0.11 0.05 7.46 -51.93 -0.39 -0.33 16 12 C -0.14 0.26 7.27 -25.83 -0.19 0.07 16 13 C -0.07 0.19 3.86 -90.96 -0.35 -0.16 16 14 H 0.10 -0.34 8.09 -51.93 -0.42 -0.76 16 15 C -0.07 0.07 5.29 -104.63 -0.55 -0.48 16 16 C -0.10 0.13 8.55 -39.58 -0.34 -0.21 16 17 C -0.11 0.10 10.05 -39.59 -0.40 -0.29 16 18 C -0.10 -0.01 9.79 -39.56 -0.39 -0.39 16 19 C -0.09 -0.06 6.22 -39.51 -0.25 -0.31 16 20 Br -0.05 -0.05 33.70 -68.01 -2.29 -2.35 16 21 C -0.09 0.01 9.45 -39.55 -0.37 -0.36 16 22 C -0.14 0.38 7.29 -25.92 -0.19 0.19 16 23 C -0.21 0.42 10.38 29.93 0.31 0.73 16 24 S 0.20 -0.42 20.20 -107.50 -2.17 -2.60 16 25 H 0.38 -0.83 8.70 45.56 0.40 -0.44 16 26 H 0.13 -0.20 7.96 -51.93 -0.41 -0.61 16 27 H -0.23 -0.28 7.11 56.52 0.40 0.12 16 28 H -0.24 0.08 7.11 56.52 0.40 0.48 16 29 H 0.16 0.34 8.06 -52.49 -0.42 -0.08 16 30 H 0.40 -1.53 7.20 -40.82 -0.29 -1.82 16 31 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.10 -0.21 6.38 -51.93 -0.33 -0.55 16 33 H 0.13 -0.38 6.72 -52.49 -0.35 -0.73 16 34 H 0.13 -0.37 8.06 -52.49 -0.42 -0.79 16 35 H 0.13 -0.13 8.06 -52.48 -0.42 -0.55 16 36 H 0.13 -0.17 8.05 -52.49 -0.42 -0.59 16 37 H 0.10 -0.30 7.66 -51.93 -0.40 -0.70 16 38 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 39 H 0.17 -0.85 7.01 -52.49 -0.37 -1.22 16 LS Contribution 364.02 15.07 5.49 5.49 Total: 0.00 -7.31 364.02 -13.40 -20.71 By element: Atomic # 1 Polarization: -5.43 SS G_CDS: -4.30 Total: -9.73 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -4.21 Total: -1.68 kcal Atomic # 7 Polarization: 0.82 SS G_CDS: -0.28 Total: 0.54 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -0.37 Total: -3.99 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: -5.26 Total: -6.39 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -2.17 Total: -2.60 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -2.29 Total: -2.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -7.31 -13.40 -20.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.186 kcal (2) G-P(sol) polarization free energy of solvation -7.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds