Wall clock time and date at job start Sun Mar 7 2021 01:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47147 * 2 1 4 4 C 1.50700 * 109.47393 * 119.99865 * 2 1 3 5 5 C 1.32770 * 124.70667 * 65.00160 * 4 2 1 6 6 C 1.44429 * 113.07854 * 179.97438 * 5 4 2 7 7 C 1.47194 * 123.45578 * 179.97438 * 6 5 4 8 8 O 1.21633 * 120.00299 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99602 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00232 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84658 * 336.19803 * 10 9 7 12 12 C 1.53952 * 113.61371 * 107.46365 * 10 9 7 13 13 C 1.53787 * 87.01797 * 89.20376 * 12 10 9 14 14 H 1.09003 * 113.61199 * 270.76816 * 13 12 10 15 15 C 1.50698 * 113.61270 * 139.95021 * 13 12 10 16 16 C 1.38219 * 119.99897 * 321.12282 * 15 13 12 17 17 C 1.38270 * 120.02033 * 180.29778 * 16 15 13 18 18 C 1.38194 * 120.00827 * 359.72234 * 17 16 15 19 19 C 1.38346 * 119.99293 * 359.97438 * 18 17 16 20 20 Br 1.89101 * 120.01208 * 180.02562 * 19 18 17 21 21 C 1.38243 * 119.99141 * 140.86021 * 15 13 12 22 22 C 1.53776 * 87.17220 * 25.36244 * 13 12 10 23 23 C 1.36009 * 113.07987 * 0.26895 * 6 5 4 24 24 S 1.70445 * 110.81611 * 359.58908 * 23 6 5 25 25 H 0.96696 * 114.00545 * 299.99829 * 1 2 3 26 26 H 1.08995 * 109.47236 * 240.00340 * 2 1 3 27 27 H 1.48503 * 110.00153 * 300.00300 * 3 2 1 28 28 H 1.48501 * 110.00129 * 61.31734 * 3 2 1 29 29 H 1.07997 * 123.46296 * 0.02562 * 5 4 2 30 30 H 0.97001 * 120.00428 * 0.02562 * 9 7 6 31 31 H 1.09007 * 113.66868 * 334.67730 * 12 10 9 32 32 H 1.09005 * 113.61845 * 203.72136 * 12 10 9 33 33 H 1.07998 * 119.99200 * 359.97438 * 16 15 13 34 34 H 1.07992 * 119.99070 * 179.69648 * 17 16 15 35 35 H 1.08005 * 120.00287 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.00880 * 359.97438 * 21 15 13 37 37 H 1.09000 * 113.61637 * 89.15729 * 22 13 12 38 38 H 1.09002 * 113.61586 * 220.06057 * 22 13 12 39 39 H 1.07998 * 124.58943 * 179.71517 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7485 -2.0003 1.4863 6 6 2.3366 -2.4183 2.7374 7 6 2.2697 -3.7985 3.2446 8 8 1.6958 -4.6559 2.6004 9 7 2.8433 -4.1118 4.4232 10 6 2.7763 -5.4853 4.9283 11 1 1.9346 -6.0455 4.5209 12 6 4.1167 -6.2382 4.8476 13 6 4.4213 -5.6827 6.2489 14 1 4.9226 -4.7149 6.2354 15 6 5.0937 -6.6774 7.1595 16 6 4.7102 -8.0052 7.1360 17 6 5.3226 -8.9171 7.9757 18 6 6.3224 -8.5024 8.8349 19 6 6.7109 -7.1748 8.8544 20 35 8.0795 -6.6069 10.0294 21 6 6.0978 -6.2629 8.0145 22 6 2.9008 -5.5861 6.4578 23 6 2.9531 -1.4042 3.4019 24 16 2.8400 0.0523 2.5239 25 1 -0.3934 0.4416 0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 1.5614 2.4679 -1.2085 28 1 1.5878 2.4586 1.2242 29 1 1.2155 -2.6686 0.8262 30 1 3.3000 -3.4277 4.9375 31 1 4.7848 -5.8605 4.0734 32 1 4.0078 -7.3225 4.8219 33 1 3.9284 -8.3294 6.4652 34 1 5.0192 -9.9534 7.9604 35 1 6.8004 -9.2148 9.4911 36 1 6.4006 -5.2263 8.0296 37 1 2.4587 -6.4917 6.8731 38 1 2.5886 -4.6827 6.9817 39 1 3.4490 -1.5083 4.3556 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:43:06 Heat of formation + Delta-G solvation = 25.900093 kcal Electronic energy + Delta-G solvation = -24285.007989 eV Core-core repulsion = 20525.905971 eV Total energy + Delta-G solvation = -3759.102018 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.003 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.69250 -40.58724 -39.19116 -38.59831 -37.17858 -34.78296 -33.18384 -32.28518 -31.46046 -30.10175 -26.99275 -26.75707 -26.69535 -25.28214 -23.53694 -22.63583 -22.14350 -20.60933 -20.13522 -18.90460 -18.35094 -17.89846 -17.68206 -16.95806 -16.46388 -16.43027 -16.20278 -15.98303 -15.73050 -15.33244 -15.12480 -14.72489 -14.52287 -14.43635 -14.25581 -14.04486 -13.77625 -13.60618 -13.44750 -13.35152 -12.90687 -12.65202 -12.43663 -12.33119 -12.01981 -11.93829 -11.83343 -11.54758 -11.36700 -11.16701 -11.06305 -10.74728 -10.21860 -9.99254 -9.84893 -9.61158 -9.45331 -5.03390 -0.34201 0.09587 0.28136 0.39448 0.64078 0.69968 0.81366 1.22554 1.55537 1.91152 2.04341 2.23886 2.57388 3.30889 3.43043 3.59053 3.60531 3.68405 3.87005 3.89778 3.95388 3.98698 4.09799 4.12021 4.28222 4.29269 4.41797 4.50165 4.62970 4.66871 4.70972 4.76185 4.83258 4.93501 4.97327 5.00708 5.01251 5.12769 5.17023 5.22135 5.36644 5.46652 5.62468 5.84008 6.40959 6.44609 7.13501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.047 4.047 3 Si 0.728 3.272 4 C -0.246 4.246 5 C -0.075 4.075 6 C -0.182 4.182 7 C 0.578 3.422 8 O -0.583 6.583 9 N -0.693 5.693 10 C 0.114 3.886 11 H 0.086 0.914 12 C -0.141 4.141 13 C -0.064 4.064 14 H 0.113 0.887 15 C -0.067 4.067 16 C -0.106 4.106 17 C -0.114 4.114 18 C -0.108 4.108 19 C -0.103 4.103 20 Br -0.061 7.061 21 C -0.096 4.096 22 C -0.123 4.123 23 C -0.189 4.189 24 S 0.250 5.750 25 H 0.388 0.612 26 H 0.129 0.871 27 H -0.277 1.277 28 H -0.249 1.249 29 H 0.132 0.868 30 H 0.415 0.585 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.172 3.527 3.160 5.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.158 4.158 3 Si 0.629 3.371 4 C -0.362 4.362 5 C -0.105 4.105 6 C -0.200 4.200 7 C 0.365 3.635 8 O -0.464 6.464 9 N -0.345 5.345 10 C 0.008 3.992 11 H 0.104 0.896 12 C -0.180 4.180 13 C -0.083 4.083 14 H 0.131 0.869 15 C -0.068 4.068 16 C -0.124 4.124 17 C -0.133 4.133 18 C -0.128 4.128 19 C -0.182 4.182 20 Br 0.025 6.975 21 C -0.116 4.116 22 C -0.161 4.161 23 C -0.327 4.327 24 S 0.516 5.484 25 H 0.238 0.762 26 H 0.146 0.854 27 H -0.203 1.203 28 H -0.174 1.174 29 H 0.150 0.850 30 H 0.253 0.747 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.680 5.135 2.885 6.945 hybrid contribution -1.653 -1.892 0.148 2.517 sum 2.027 3.243 3.033 4.881 Atomic orbital electron populations 1.86613 1.18208 1.80417 1.50097 1.24723 0.83288 1.11424 0.96335 0.94410 0.90488 0.72145 0.80064 1.24814 1.09595 0.98158 1.03676 1.20998 0.98803 0.95000 0.95666 1.20083 1.08077 0.93893 0.97966 1.17900 0.77437 0.87239 0.80893 1.90796 1.45505 1.51214 1.58871 1.45370 1.56612 1.11455 1.21022 1.21915 0.98877 0.82695 0.95694 0.89587 1.23597 0.96605 1.01322 0.96433 1.21606 0.95389 0.98008 0.93266 0.86879 1.19836 0.95605 0.94808 0.96513 1.21439 0.99794 0.92607 0.98533 1.21455 0.95489 1.01212 0.95119 1.21345 0.97803 0.94048 0.99598 1.21965 0.99041 0.96835 1.00342 1.96760 1.48552 1.90619 1.61615 1.21189 0.95807 0.99724 0.94879 1.23388 0.94468 1.04560 0.93700 1.26181 1.02967 0.97831 1.05764 1.83023 1.48476 1.07818 1.09083 0.76222 0.85370 1.20308 1.17369 0.85008 0.74735 0.91309 0.88176 0.83690 0.83264 0.84562 0.84223 0.87790 0.89253 0.77806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.46 12.88 -148.98 -1.92 -3.38 16 2 C -0.05 0.05 2.94 71.24 0.21 0.26 16 3 Si 0.73 -2.81 30.92 68.60 2.12 -0.69 16 4 C -0.25 0.16 5.65 24.51 0.14 0.30 16 5 C -0.08 -0.31 9.95 22.67 0.23 -0.08 16 6 C -0.18 -0.30 5.98 -19.87 -0.12 -0.42 16 7 C 0.58 3.08 7.79 86.60 0.67 3.76 16 8 O -0.58 -8.77 16.40 -4.14 -0.07 -8.83 16 9 N -0.69 1.76 5.23 -443.24 -2.32 -0.56 16 10 C 0.11 -0.27 4.33 45.58 0.20 -0.07 16 11 H 0.09 0.22 7.46 -2.39 -0.02 0.21 16 12 C -0.14 0.55 7.27 31.18 0.23 0.77 16 13 C -0.06 0.42 3.86 -11.01 -0.04 0.38 16 14 H 0.11 -1.03 8.09 -2.39 -0.02 -1.05 16 15 C -0.07 0.21 5.29 -19.87 -0.11 0.10 16 16 C -0.11 0.36 8.55 22.27 0.19 0.55 16 17 C -0.11 0.28 10.05 22.27 0.22 0.50 16 18 C -0.11 -0.01 9.79 22.29 0.22 0.21 16 19 C -0.10 -0.14 6.22 22.31 0.14 0.00 16 20 Br -0.06 -0.14 33.70 -20.37 -0.69 -0.83 16 21 C -0.10 0.09 9.45 22.29 0.21 0.30 16 22 C -0.12 0.84 7.29 31.12 0.23 1.07 16 23 C -0.19 1.09 10.38 67.30 0.70 1.79 16 24 S 0.25 -1.51 20.20 -56.49 -1.14 -2.65 16 25 H 0.39 -1.41 8.70 -74.06 -0.64 -2.06 16 26 H 0.13 -0.23 7.96 -2.39 -0.02 -0.25 16 27 H -0.28 -0.93 7.11 99.48 0.71 -0.22 16 28 H -0.25 0.52 7.11 99.48 0.71 1.23 16 29 H 0.13 1.08 8.06 -2.91 -0.02 1.06 16 30 H 0.41 -3.89 7.20 -92.71 -0.67 -4.56 16 31 H 0.07 -0.12 8.14 -2.38 -0.02 -0.14 16 32 H 0.10 -0.45 6.38 -2.38 -0.02 -0.47 16 33 H 0.15 -0.99 6.72 -2.91 -0.02 -1.01 16 34 H 0.15 -0.96 8.06 -2.91 -0.02 -0.98 16 35 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 36 H 0.14 -0.48 8.05 -2.91 -0.02 -0.51 16 37 H 0.10 -0.73 7.66 -2.39 -0.02 -0.75 16 38 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 39 H 0.21 -2.75 7.01 -2.91 -0.02 -2.77 16 Total: 0.00 -19.97 364.02 -0.86 -20.83 By element: Atomic # 1 Polarization: -13.13 SS G_CDS: -0.16 Total: -13.29 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 3.31 Total: 9.40 kcal Atomic # 7 Polarization: 1.76 SS G_CDS: -2.32 Total: -0.56 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -1.99 Total: -12.21 kcal Atomic # 14 Polarization: -2.81 SS G_CDS: 2.12 Total: -0.69 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -1.14 Total: -2.65 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -0.69 Total: -0.83 kcal Total: -19.97 -0.86 -20.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.731 kcal (2) G-P(sol) polarization free energy of solvation -19.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds