Wall clock time and date at job start Sun Mar 7 2021 01:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37932 * 120.07845 * 2 1 4 4 C 1.38386 * 120.14990 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.85301 * 179.97438 * 4 3 2 6 6 C 1.38331 * 120.28977 * 359.97438 * 4 3 2 7 7 C 1.50697 * 119.92835 * 180.02562 * 6 4 3 8 8 O 1.42903 * 109.47045 * 285.00314 * 7 6 4 9 9 Si 1.86294 * 109.47402 * 165.00042 * 7 6 4 10 10 C 1.37982 * 120.14832 * 359.74390 * 6 4 3 11 11 C 1.39559 * 119.84754 * 0.52973 * 10 6 4 12 12 C 1.47844 * 120.14235 * 179.74382 * 11 10 6 13 13 O 1.21559 * 120.00039 * 173.74070 * 12 11 10 14 14 N 1.34778 * 120.00155 * 353.74387 * 12 11 10 15 15 C 1.46502 * 120.00000 * 179.97438 * 14 12 11 16 16 H 1.08997 * 112.90874 * 336.25604 * 15 14 12 17 17 C 1.54051 * 113.60950 * 107.62076 * 15 14 12 18 18 C 1.53778 * 87.07707 * 89.07291 * 17 15 14 19 19 H 1.09004 * 113.68984 * 270.86997 * 18 17 15 20 20 C 1.50699 * 113.61728 * 139.97665 * 18 17 15 21 21 C 1.38196 * 120.00064 * 142.49959 * 20 18 17 22 22 C 1.38348 * 119.99377 * 180.02562 * 21 20 18 23 23 Br 1.89098 * 120.00682 * 179.97438 * 22 21 20 24 24 C 1.38297 * 119.97961 * 0.02562 * 22 21 20 25 25 C 1.38244 * 119.99074 * 359.97438 * 24 22 21 26 26 C 1.38225 * 120.00873 * 359.72926 * 25 24 22 27 27 C 1.53777 * 87.08109 * 25.42936 * 18 17 15 28 28 H 1.08995 * 109.47576 * 263.43404 * 1 2 3 29 29 H 1.09009 * 109.47105 * 23.43273 * 1 2 3 30 30 H 1.09001 * 109.47346 * 143.42990 * 1 2 3 31 31 H 1.08006 * 119.92166 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47606 * 89.99853 * 5 4 3 33 33 H 1.09001 * 109.46915 * 210.00345 * 5 4 3 34 34 H 1.09010 * 109.47446 * 329.99789 * 5 4 3 35 35 H 1.09000 * 109.47183 * 44.99837 * 7 6 4 36 36 H 0.96701 * 113.99887 * 299.99929 * 8 7 6 37 37 H 1.48506 * 110.00244 * 180.02562 * 9 7 6 38 38 H 1.48501 * 110.00253 * 301.31991 * 9 7 6 39 39 H 1.07993 * 120.07925 * 180.25585 * 10 6 4 40 40 H 0.96998 * 120.00166 * 0.02562 * 14 12 11 41 41 H 1.08998 * 113.62037 * 334.52885 * 17 15 14 42 42 H 1.08998 * 113.61585 * 203.61643 * 17 15 14 43 43 H 1.08004 * 120.00127 * 0.03207 * 21 20 18 44 44 H 1.07995 * 120.00711 * 180.02562 * 24 22 21 45 45 H 1.07997 * 119.99445 * 179.97438 * 25 24 22 46 46 H 1.07996 * 119.99152 * 180.26802 * 26 25 24 47 47 H 1.08996 * 113.61750 * 89.11660 * 27 18 17 48 48 H 1.09004 * 113.61668 * 219.93548 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5821 1.1953 0.0005 5 6 4.3306 2.5032 -0.0001 6 6 4.2813 0.0017 0.0016 7 6 5.7882 0.0131 0.0028 8 8 6.2629 0.3649 -1.2984 9 14 6.4217 -1.6785 0.4586 10 6 3.6020 -1.1993 0.0075 11 6 2.2065 -1.2081 0.0012 12 6 1.4721 -2.4912 0.0017 13 8 0.2615 -2.4986 0.1110 14 7 2.1449 -3.6528 -0.1190 15 6 1.4172 -4.9243 -0.1179 16 1 0.4497 -4.8591 0.3799 17 6 1.3579 -5.6024 -1.4998 18 6 2.6793 -6.2960 -1.1288 19 1 3.5660 -5.7254 -1.4051 20 6 2.7496 -7.7358 -1.5681 21 6 3.9408 -8.2585 -2.0346 22 6 4.0050 -9.5802 -2.4384 23 35 5.6346 -10.2957 -3.0775 24 6 2.8769 -10.3776 -2.3755 25 6 1.6856 -9.8539 -1.9087 26 6 1.6234 -8.5351 -1.4997 27 6 2.2673 -6.1203 0.3423 28 1 -0.3634 -0.1175 1.0208 29 1 -0.3634 0.9430 -0.4087 30 1 -0.3634 -0.8253 -0.6123 31 1 1.6582 2.1289 -0.0004 32 1 4.5107 2.8194 1.0274 33 1 5.2836 2.3762 -0.5135 34 1 3.7388 3.2604 -0.5147 35 1 6.1455 0.7428 0.7294 36 1 5.9827 -0.2424 -1.9968 37 1 7.9068 -1.6803 0.4639 38 1 5.9091 -2.0694 1.7964 39 1 4.1490 -2.1305 0.0125 40 1 3.1110 -3.6470 -0.2057 41 1 1.4496 -4.9053 -2.3327 42 1 0.5203 -6.2908 -1.6129 43 1 4.8215 -7.6353 -2.0839 44 1 2.9266 -11.4095 -2.6902 45 1 0.8045 -10.4765 -1.8600 46 1 0.6938 -8.1275 -1.1310 47 1 1.6784 -6.9501 0.7329 48 1 3.0935 -5.8425 0.9970 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_9599494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:43:18 Heat of formation + Delta-G solvation = 17.293391 kcal Electronic energy + Delta-G solvation = -30575.535136 eV Core-core repulsion = 26415.832419 eV Total energy + Delta-G solvation = -4159.702717 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.077 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.88620 -41.07775 -39.98848 -38.80204 -37.56806 -35.02364 -34.37388 -33.38940 -32.95769 -31.91506 -30.10192 -29.29399 -28.55523 -26.63229 -26.23496 -25.52316 -23.76888 -23.49113 -22.99322 -22.12320 -21.04578 -19.95740 -19.09606 -18.04931 -17.48839 -17.38727 -16.72710 -16.49041 -16.31308 -16.19211 -16.11207 -15.93986 -15.58641 -15.11385 -15.04412 -14.71360 -14.66177 -14.48460 -14.41316 -14.21223 -14.14398 -13.91518 -13.45499 -13.39363 -13.31075 -13.06151 -12.89135 -12.76301 -12.60925 -12.51535 -12.27530 -12.15417 -11.96639 -11.88478 -11.83599 -11.48976 -11.31624 -11.11119 -10.70765 -10.42008 -10.14049 -9.89432 -9.80390 -9.61566 -9.55569 -5.08548 -0.25542 0.13818 0.17168 0.32609 0.68046 1.27813 1.61352 1.74914 1.96724 2.05320 2.61421 2.65006 3.45947 3.49348 3.51620 3.62579 3.66683 3.72821 3.76138 3.82006 3.93074 4.01808 4.14800 4.16032 4.16700 4.23193 4.34342 4.45950 4.46803 4.51435 4.56763 4.66367 4.70006 4.71756 4.75552 4.79943 4.83046 4.87650 4.93175 4.98257 5.01808 5.05158 5.09031 5.15371 5.18803 5.26467 5.27412 5.41089 5.48102 5.50134 5.54135 5.69422 5.80145 5.88426 6.48483 6.77833 7.17553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.026 4.026 3 C -0.138 4.138 4 C -0.032 4.032 5 C -0.127 4.127 6 C -0.140 4.140 7 C -0.069 4.069 8 O -0.549 6.549 9 Si 0.763 3.237 10 C -0.063 4.063 11 C -0.158 4.158 12 C 0.560 3.440 13 O -0.561 6.561 14 N -0.698 5.698 15 C 0.115 3.885 16 H 0.090 0.910 17 C -0.140 4.140 18 C -0.067 4.067 19 H 0.118 0.882 20 C -0.065 4.065 21 C -0.096 4.096 22 C -0.103 4.103 23 Br -0.062 7.062 24 C -0.109 4.109 25 C -0.115 4.115 26 C -0.106 4.106 27 C -0.127 4.127 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.395 0.605 37 H -0.296 1.296 38 H -0.282 1.282 39 H 0.153 0.847 40 H 0.413 0.587 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.143 0.857 44 H 0.135 0.865 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.103 0.897 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.469 -0.672 -0.701 1.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.027 4.027 3 C -0.156 4.156 4 C -0.033 4.033 5 C -0.184 4.184 6 C -0.140 4.140 7 C -0.179 4.179 8 O -0.358 6.358 9 Si 0.668 3.332 10 C -0.081 4.081 11 C -0.161 4.161 12 C 0.350 3.650 13 O -0.441 6.441 14 N -0.350 5.350 15 C 0.010 3.990 16 H 0.108 0.892 17 C -0.178 4.178 18 C -0.086 4.086 19 H 0.136 0.864 20 C -0.066 4.066 21 C -0.116 4.116 22 C -0.182 4.182 23 Br 0.023 6.977 24 C -0.129 4.129 25 C -0.134 4.134 26 C -0.124 4.124 27 C -0.165 4.165 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.161 0.839 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.245 0.755 37 H -0.224 1.224 38 H -0.208 1.208 39 H 0.170 0.830 40 H 0.251 0.749 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.160 0.840 44 H 0.153 0.847 45 H 0.166 0.834 46 H 0.164 0.836 47 H 0.121 0.879 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.969 -0.957 0.023 1.362 hybrid contribution -0.078 0.641 0.304 0.714 sum 0.891 -0.316 0.327 1.000 Atomic orbital electron populations 1.21026 0.90119 1.03286 1.03043 1.20220 0.96982 0.91998 0.93460 1.21185 0.93678 0.98050 1.02640 1.20222 0.93486 0.95931 0.93632 1.21009 1.01009 0.93194 1.03165 1.20185 0.96548 0.92821 1.04449 1.25104 0.91047 1.12303 0.89411 1.86480 1.75947 1.56776 1.16550 0.94238 0.77654 0.78271 0.83025 1.21173 0.92365 0.97843 0.96746 1.19673 0.93762 0.92829 1.09804 1.18374 0.86767 0.84296 0.75608 1.90742 1.15089 1.87454 1.50825 1.45496 1.11213 1.04559 1.73717 1.21920 0.96760 0.82389 0.97941 0.89195 1.23602 0.97767 0.99321 0.97150 1.21659 0.99545 0.90970 0.96397 0.86395 1.19850 0.92584 0.96148 0.98021 1.21217 0.99158 0.93204 0.97994 1.21964 0.92574 0.97014 1.06677 1.96760 1.28247 1.85608 1.87067 1.21329 0.91985 1.00258 0.99355 1.21446 0.97801 0.96134 0.98027 1.21444 0.99110 0.93589 0.98219 1.23411 1.00277 0.97046 0.95775 0.91306 0.90946 0.90102 0.83914 0.90243 0.90095 0.90390 0.87352 0.75464 1.22375 1.20826 0.82978 0.74910 0.91072 0.88240 0.83961 0.84749 0.83419 0.83645 0.87903 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 8.73 71.23 0.62 0.15 16 2 C -0.03 -0.08 5.91 -19.61 -0.12 -0.20 16 3 C -0.14 -0.12 9.31 22.23 0.21 0.08 16 4 C -0.03 0.00 5.89 -19.81 -0.12 -0.11 16 5 C -0.13 0.27 9.31 71.23 0.66 0.94 16 6 C -0.14 0.27 5.26 -19.90 -0.10 0.17 16 7 C -0.07 0.23 1.88 71.23 0.13 0.36 16 8 O -0.55 1.75 11.91 -148.98 -1.78 -0.03 16 9 Si 0.76 -3.98 29.91 68.60 2.05 -1.93 16 10 C -0.06 0.21 8.13 22.53 0.18 0.39 16 11 C -0.16 -0.25 5.87 -20.09 -0.12 -0.36 16 12 C 0.56 1.67 7.70 86.79 0.67 2.34 16 13 O -0.56 -5.59 12.94 -3.90 -0.05 -5.64 16 14 N -0.70 2.77 5.21 -442.47 -2.31 0.46 16 15 C 0.12 -0.49 4.34 45.61 0.20 -0.29 16 16 H 0.09 0.00 7.47 -2.39 -0.02 -0.01 16 17 C -0.14 0.80 7.26 31.21 0.23 1.03 16 18 C -0.07 0.53 3.86 -11.02 -0.04 0.49 16 19 H 0.12 -1.30 8.09 -2.39 -0.02 -1.32 16 20 C -0.07 0.27 5.29 -19.87 -0.11 0.17 16 21 C -0.10 0.18 9.45 22.29 0.21 0.39 16 22 C -0.10 -0.09 6.22 22.31 0.14 0.05 16 23 Br -0.06 -0.13 33.70 -20.37 -0.69 -0.81 16 24 C -0.11 0.03 9.79 22.29 0.22 0.25 16 25 C -0.12 0.34 10.05 22.27 0.22 0.56 16 26 C -0.11 0.44 8.60 22.27 0.19 0.64 16 27 C -0.13 1.01 7.28 31.12 0.23 1.24 16 28 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.05 8.04 -2.38 -0.02 0.03 16 30 H 0.08 0.61 5.85 -2.39 -0.01 0.60 16 31 H 0.14 -0.30 8.06 -2.91 -0.02 -0.32 16 32 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.08 -0.07 6.18 -2.39 -0.01 -0.09 16 34 H 0.08 -0.27 8.08 -2.38 -0.02 -0.29 16 35 H 0.11 -0.22 7.38 -2.39 -0.02 -0.24 16 36 H 0.40 -4.35 8.70 -74.06 -0.64 -4.99 16 37 H -0.30 -0.80 7.11 99.48 0.71 -0.10 16 38 H -0.28 0.07 7.11 99.48 0.71 0.77 16 39 H 0.15 -1.53 3.51 -2.91 -0.01 -1.54 16 40 H 0.41 -4.15 6.78 -92.71 -0.63 -4.78 16 41 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.10 -0.63 6.32 -2.39 -0.02 -0.64 16 43 H 0.14 -0.66 8.05 -2.91 -0.02 -0.69 16 44 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 45 H 0.15 -0.99 8.06 -2.91 -0.02 -1.02 16 46 H 0.15 -1.13 6.67 -2.91 -0.02 -1.15 16 47 H 0.10 -0.83 7.71 -2.39 -0.02 -0.85 16 48 H 0.09 -0.83 8.14 -2.38 -0.02 -0.85 16 Total: 0.00 -18.16 403.61 0.53 -17.63 By element: Atomic # 1 Polarization: -17.73 SS G_CDS: -0.21 Total: -17.95 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 3.51 Total: 8.26 kcal Atomic # 7 Polarization: 2.77 SS G_CDS: -2.31 Total: 0.46 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -1.83 Total: -5.67 kcal Atomic # 14 Polarization: -3.98 SS G_CDS: 2.05 Total: -1.93 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -0.69 Total: -0.81 kcal Total: -18.16 0.53 -17.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_9599494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.922 kcal (2) G-P(sol) polarization free energy of solvation -18.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds