Wall clock time and date at job start Sun Mar 7 2021 04:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37649 * 125.67975 * 2 1 4 4 C 1.46681 * 126.23286 * 359.97438 * 3 2 1 5 5 O 1.21702 * 119.99929 * 173.66452 * 4 3 2 6 6 N 1.34780 * 120.00135 * 353.67303 * 4 3 2 7 7 C 1.46497 * 119.99847 * 184.23462 * 6 4 3 8 8 C 1.50695 * 112.90843 * 285.87002 * 7 6 4 9 9 N 1.34778 * 120.00201 * 336.69098 * 8 7 6 10 10 O 1.21279 * 119.99963 * 156.68925 * 8 7 6 11 11 C 1.53963 * 113.61102 * 154.54706 * 7 6 4 12 12 C 1.53780 * 87.11003 * 270.84177 * 11 7 6 13 13 H 1.09001 * 113.69288 * 220.08364 * 12 11 7 14 14 O 1.42906 * 113.61720 * 89.18580 * 12 11 7 15 15 C 1.53778 * 113.61300 * 57.12533 * 7 6 4 16 16 C 1.37873 * 107.53546 * 180.24128 * 3 2 1 17 17 C 1.39837 * 107.08160 * 359.58475 * 16 3 2 18 18 C 1.35452 * 107.86665 * 0.41853 * 17 16 3 19 19 C 1.50698 * 125.56723 * 179.71777 * 18 17 16 20 20 O 1.42894 * 109.47401 * 150.02289 * 19 18 17 21 21 Si 1.86306 * 109.46840 * 30.02282 * 19 18 17 22 22 H 1.09008 * 109.46955 * 83.11093 * 1 2 3 23 23 H 1.08998 * 109.47306 * 203.11501 * 1 2 3 24 24 H 1.08997 * 109.46977 * 323.12130 * 1 2 3 25 25 H 0.97003 * 119.99549 * 4.23225 * 6 4 3 26 26 H 0.97001 * 119.99562 * 5.03560 * 9 8 7 27 27 H 0.97000 * 120.00262 * 185.03318 * 9 8 7 28 28 H 1.08992 * 113.53471 * 156.28931 * 11 7 6 29 29 H 1.08996 * 113.66120 * 25.40857 * 11 7 6 30 30 H 0.96700 * 113.99719 * 82.49875 * 14 12 11 31 31 H 1.08996 * 113.61677 * 334.56448 * 15 7 6 32 32 H 1.09005 * 113.61148 * 203.74673 * 15 7 6 33 33 H 1.07995 * 126.46028 * 179.73718 * 16 3 2 34 34 H 1.08002 * 126.06684 * 180.15171 * 17 16 3 35 35 H 1.09003 * 109.47072 * 270.02612 * 19 18 17 36 36 H 0.96698 * 114.00564 * 180.02562 * 20 19 18 37 37 H 1.48494 * 109.99742 * 60.00212 * 21 19 18 38 38 H 1.48498 * 109.99914 * 181.31702 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2679 1.1181 0.0000 4 6 1.8125 2.5124 -0.0005 5 8 2.6193 3.4161 0.1158 6 7 0.5005 2.7929 -0.1297 7 6 0.0549 4.1853 -0.2235 8 6 0.1166 4.9110 1.0957 9 7 0.0840 4.2155 2.2497 10 8 0.1955 6.1210 1.1190 11 6 -1.2863 4.3552 -0.9603 12 6 -0.4694 4.4748 -2.2577 13 1 -0.8464 5.2328 -2.9443 14 8 -0.2228 3.2205 -2.8967 15 6 0.6992 4.9613 -1.3843 16 6 3.5780 0.6888 -0.0055 17 6 3.5522 -0.7094 0.0008 18 6 2.2555 -1.1010 0.0005 19 6 1.7708 -2.5279 0.0002 20 8 0.5125 -2.6037 0.6730 21 14 3.0109 -3.6051 0.8791 22 1 -0.3633 0.1233 -1.0203 23 1 -0.3634 -0.9451 0.4034 24 1 -0.3633 0.8220 0.6167 25 1 -0.1486 2.0727 -0.1606 26 1 0.0947 3.2457 2.2319 27 1 0.0500 4.6847 3.0980 28 1 -1.8171 5.2687 -0.6928 29 1 -1.9207 3.4696 -0.9239 30 1 -0.9542 2.9092 -3.4474 31 1 1.6674 4.5651 -1.6903 32 1 0.7119 6.0408 -1.2339 33 1 4.4584 1.3143 -0.0110 34 1 4.4132 -1.3613 0.0011 35 1 1.6546 -2.8719 -1.0276 36 1 0.1399 -3.4952 0.7114 37 1 3.1784 -3.1464 2.2815 38 1 2.5600 -5.0198 0.8580 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_10803936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:57:36 Heat of formation + Delta-G solvation = -57.000168 kcal Electronic energy + Delta-G solvation = -25382.576180 eV Core-core repulsion = 21615.233450 eV Total energy + Delta-G solvation = -3767.342730 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.83243 -42.00856 -39.85769 -39.16100 -37.84456 -36.32315 -35.01083 -34.53653 -33.24886 -31.43322 -27.81767 -27.53937 -27.10617 -26.17923 -23.40449 -22.35515 -21.56461 -20.69752 -20.45202 -19.30532 -18.77925 -18.48954 -18.10280 -18.00690 -16.96429 -16.88220 -16.71523 -16.18806 -16.04447 -15.66613 -15.48294 -15.17585 -15.04194 -14.60549 -14.41364 -14.00546 -13.71320 -13.64666 -13.41532 -13.33138 -13.24613 -13.02920 -12.56043 -12.36600 -12.08753 -12.02999 -11.55077 -11.20031 -11.11875 -10.88098 -10.75146 -10.22598 -9.74442 -9.08287 -4.82954 0.28518 1.18044 1.28674 1.60801 1.68334 1.75633 1.87365 2.07425 2.20388 2.42739 2.97489 3.05090 3.21130 3.34470 3.49421 3.59132 3.67955 3.82111 3.89794 4.24405 4.26966 4.35444 4.45612 4.50961 4.56463 4.63660 4.69692 4.77010 4.85067 4.86470 5.04482 5.17987 5.20265 5.65969 5.69482 5.88921 6.11840 6.16300 6.28911 6.54254 6.86210 6.94341 7.08111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.408 5.408 3 C -0.082 4.082 4 C 0.594 3.406 5 O -0.561 6.561 6 N -0.691 5.691 7 C 0.124 3.876 8 C 0.524 3.476 9 N -0.836 5.836 10 O -0.578 6.578 11 C -0.136 4.136 12 C 0.096 3.904 13 H 0.100 0.900 14 O -0.560 6.560 15 C -0.130 4.130 16 C -0.119 4.119 17 C -0.211 4.211 18 C 0.062 3.938 19 C -0.054 4.054 20 O -0.554 6.554 21 Si 0.786 3.214 22 H 0.096 0.904 23 H 0.133 0.867 24 H 0.087 0.913 25 H 0.414 0.586 26 H 0.407 0.593 27 H 0.407 0.593 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.401 0.599 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.143 0.857 34 H 0.180 0.820 35 H 0.111 0.889 36 H 0.403 0.597 37 H -0.311 1.311 38 H -0.276 1.276 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 -9.700 -3.293 12.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.084 5.084 3 C -0.194 4.194 4 C 0.384 3.616 5 O -0.440 6.440 6 N -0.351 5.351 7 C 0.033 3.967 8 C 0.307 3.693 9 N -0.398 5.398 10 O -0.457 6.457 11 C -0.174 4.174 12 C 0.036 3.964 13 H 0.118 0.882 14 O -0.368 6.368 15 C -0.169 4.169 16 C -0.146 4.146 17 C -0.234 4.234 18 C -0.056 4.056 19 C -0.163 4.163 20 O -0.366 6.366 21 Si 0.690 3.310 22 H 0.115 0.885 23 H 0.150 0.850 24 H 0.105 0.895 25 H 0.259 0.741 26 H 0.237 0.763 27 H 0.239 0.761 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.252 0.748 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.161 0.839 34 H 0.197 0.803 35 H 0.128 0.872 36 H 0.256 0.744 37 H -0.239 1.239 38 H -0.202 1.202 Dipole moment (debyes) X Y Z Total from point charges -5.706 -8.129 -2.373 10.211 hybrid contribution -1.557 -0.525 0.532 1.727 sum -7.263 -8.654 -1.841 11.447 Atomic orbital electron populations 1.22912 0.75303 1.07246 1.04835 1.43981 1.07278 1.04116 1.52975 1.20273 0.91890 0.85862 1.21335 1.17260 0.82285 0.86834 0.75268 1.90872 1.54787 1.47236 1.51077 1.45913 1.07337 1.06948 1.74920 1.21561 1.00909 0.82854 0.91373 1.20906 0.73965 0.87318 0.87067 1.43709 1.76049 1.11646 1.08411 1.90733 1.51347 1.15599 1.87975 1.23937 0.92800 1.05999 0.94686 1.22549 0.94013 0.87112 0.92700 0.88191 1.86502 1.46643 1.36829 1.66841 1.23323 0.99383 1.00872 0.93304 1.21451 0.94781 0.95684 1.02731 1.20889 0.95994 0.94582 1.11975 1.20419 0.90672 0.87888 1.06670 1.24633 0.93227 0.95079 1.03347 1.86323 1.34244 1.36279 1.79731 0.93329 0.84928 0.74040 0.78700 0.88537 0.84957 0.89463 0.74129 0.76274 0.76094 0.86529 0.86491 0.74834 0.91827 0.87560 0.83914 0.80255 0.87155 0.74434 1.23893 1.20203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.24 9.34 127.77 1.19 0.95 16 2 N -0.41 -0.32 3.16 -519.69 -1.64 -1.97 16 3 C -0.08 -0.55 6.88 40.35 0.28 -0.27 16 4 C 0.59 5.34 7.28 86.45 0.63 5.97 16 5 O -0.56 -10.00 15.31 -4.36 -0.07 -10.06 16 6 N -0.69 -0.84 3.58 -427.56 -1.53 -2.37 16 7 C 0.12 0.43 1.01 3.44 0.00 0.43 16 8 C 0.52 4.52 7.03 87.66 0.62 5.13 16 9 N -0.84 -1.96 8.84 -173.54 -1.53 -3.49 16 10 O -0.58 -9.78 16.91 -3.03 -0.05 -9.83 16 11 C -0.14 0.60 7.22 31.18 0.23 0.83 16 12 C 0.10 -0.19 5.28 31.12 0.16 -0.03 16 13 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 14 O -0.56 1.46 13.10 -148.98 -1.95 -0.49 16 15 C -0.13 -0.91 6.61 31.12 0.21 -0.71 16 16 C -0.12 -0.84 10.66 22.57 0.24 -0.60 16 17 C -0.21 -0.27 9.37 22.01 0.21 -0.06 16 18 C 0.06 0.00 6.18 41.34 0.26 0.25 16 19 C -0.05 0.35 2.98 71.24 0.21 0.56 16 20 O -0.55 4.04 9.69 -148.98 -1.44 2.60 16 21 Si 0.79 -4.56 31.10 68.60 2.13 -2.43 16 22 H 0.10 -0.93 8.12 -2.38 -0.02 -0.95 16 23 H 0.13 -1.00 4.98 -2.39 -0.01 -1.01 16 24 H 0.09 -0.82 5.94 -2.39 -0.01 -0.83 16 25 H 0.41 -2.05 4.38 -92.71 -0.41 -2.46 16 26 H 0.41 -0.77 8.00 -92.71 -0.74 -1.51 16 27 H 0.41 0.27 8.93 -92.71 -0.83 -0.55 16 28 H 0.12 -0.51 8.09 -2.39 -0.02 -0.53 16 29 H 0.12 -1.23 8.12 -2.39 -0.02 -1.25 16 30 H 0.40 -4.92 9.12 -74.06 -0.68 -5.59 16 31 H 0.06 0.86 6.80 -2.39 -0.02 0.84 16 32 H 0.11 0.96 7.39 -2.38 -0.02 0.94 16 33 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.18 -0.95 6.85 -2.91 -0.02 -0.97 16 35 H 0.11 -1.20 7.96 -2.39 -0.02 -1.22 16 36 H 0.40 -6.03 8.74 -74.06 -0.65 -6.67 16 37 H -0.31 -1.32 7.11 99.48 0.71 -0.61 16 38 H -0.28 0.78 7.11 99.48 0.71 1.49 16 Total: 0.00 -32.03 315.38 -3.94 -35.98 By element: Atomic # 1 Polarization: -18.30 SS G_CDS: -2.08 Total: -20.38 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 4.23 Total: 12.45 kcal Atomic # 7 Polarization: -3.12 SS G_CDS: -4.71 Total: -7.83 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -3.51 Total: -17.79 kcal Atomic # 14 Polarization: -4.56 SS G_CDS: 2.13 Total: -2.43 kcal Total: -32.03 -3.94 -35.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_10803936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.023 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds