Wall clock time and date at job start Sun Mar 7 2021 04:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34780 * 1 3 3 O 1.21271 * 119.99930 * 2 1 4 4 C 1.50700 * 119.99877 * 180.02562 * 2 1 3 5 5 N 1.46502 * 112.85146 * 36.11966 * 4 2 1 6 6 C 1.34774 * 119.99654 * 67.24648 * 5 4 2 7 7 O 1.21724 * 120.00342 * 355.06097 * 6 5 4 8 8 C 1.46576 * 120.00113 * 175.05546 * 6 5 4 9 9 C 1.40846 * 126.58013 * 180.02562 * 8 6 5 10 10 C 1.40093 * 132.86857 * 359.94350 * 9 8 6 11 11 C 1.36450 * 119.25333 * 180.02562 * 10 9 8 12 12 C 1.50700 * 120.29347 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.47361 * 119.99757 * 12 11 10 14 14 Si 1.86298 * 109.47149 * 239.99808 * 12 11 10 15 15 C 1.40159 * 119.41392 * 0.27478 * 11 10 9 16 16 C 1.35189 * 120.31049 * 359.41607 * 15 11 10 17 17 N 1.36239 * 120.71121 * 0.61359 * 16 15 11 18 18 N 1.40016 * 132.01619 * 179.67293 * 17 16 15 19 19 C 1.30738 * 109.60663 * 179.97438 * 18 17 16 20 20 C 1.53782 * 113.68921 * 264.85523 * 4 2 1 21 21 C 1.53784 * 87.07888 * 220.00685 * 20 4 2 22 22 H 1.09002 * 113.68890 * 139.99527 * 21 20 4 23 23 O 1.42900 * 113.61394 * 270.88327 * 21 20 4 24 24 C 1.53775 * 113.61586 * 167.31682 * 4 2 1 25 25 H 0.96998 * 120.00236 * 175.00688 * 1 2 3 26 26 H 0.97000 * 120.00159 * 355.00410 * 1 2 3 27 27 H 0.97001 * 120.00606 * 247.24883 * 5 4 2 28 28 H 1.07997 * 120.37290 * 0.04122 * 10 9 8 29 29 H 1.09003 * 109.47113 * 359.97438 * 12 11 10 30 30 H 0.96693 * 114.00164 * 179.97438 * 13 12 11 31 31 H 1.48497 * 110.00249 * 300.00097 * 14 12 11 32 32 H 1.48506 * 109.99871 * 61.32122 * 14 12 11 33 33 H 1.07995 * 119.84640 * 179.70242 * 15 11 10 34 34 H 1.08005 * 119.64190 * 180.30297 * 16 15 11 35 35 H 1.08000 * 125.62531 * 179.97438 * 19 18 17 36 36 H 1.08996 * 113.61457 * 334.55615 * 20 4 2 37 37 H 1.09007 * 113.61507 * 105.46037 * 20 4 2 38 38 H 0.96703 * 114.00125 * 277.49996 * 23 21 20 39 39 H 1.08994 * 113.61889 * 254.61481 * 24 4 2 40 40 H 1.09002 * 113.61071 * 25.43317 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9541 1.0502 0.0000 4 6 2.1013 -1.3051 -0.0006 5 7 1.4413 -2.3427 -0.7969 6 6 1.3566 -2.2128 -2.1356 7 8 1.7473 -1.1935 -2.6742 8 6 0.7941 -3.2990 -2.9433 9 6 0.6409 -3.3113 -4.3433 10 6 0.9443 -2.3785 -5.3436 11 6 0.6723 -2.6844 -6.6452 12 6 0.9895 -1.6986 -7.7400 13 8 1.9148 -2.2862 -8.6568 14 14 -0.5767 -1.2472 -8.6422 15 6 0.0905 -3.9214 -6.9545 16 6 -0.1880 -4.8088 -5.9734 17 7 0.0794 -4.5125 -4.6708 18 7 -0.1127 -5.2349 -3.4869 19 6 0.3052 -4.5285 -2.4692 20 6 2.5196 -1.7777 1.4018 21 6 3.8518 -2.2158 0.7708 22 1 4.7212 -2.0077 1.3945 23 8 3.8354 -3.5543 0.2706 24 6 3.5997 -1.1512 -0.3099 25 1 -0.4850 -0.8368 -0.0731 26 1 -0.4850 0.8368 0.0732 27 1 1.0652 -3.1232 -0.3606 28 1 1.3886 -1.4281 -5.0873 29 1 1.4292 -0.8012 -7.3047 30 1 2.1641 -1.7068 -9.3897 31 1 -1.1865 -2.4620 -9.2403 32 1 -1.5351 -0.6060 -7.7064 33 1 -0.1322 -4.1688 -7.9819 34 1 -0.6319 -5.7609 -6.2245 35 1 0.2781 -4.8382 -1.4349 36 1 2.6236 -0.9669 2.1227 37 1 1.9216 -2.6072 1.7794 38 1 3.9933 -4.2285 0.9456 39 1 3.8739 -1.4748 -1.3139 40 1 3.9988 -0.1686 -0.0581 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_11618758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:57:38 Heat of formation + Delta-G solvation = -15.453731 kcal Electronic energy + Delta-G solvation = -29136.271539 eV Core-core repulsion = 24920.626064 eV Total energy + Delta-G solvation = -4215.645474 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.120 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.43505 -42.15970 -39.89934 -39.26660 -39.04728 -37.29966 -36.09546 -34.78579 -34.43485 -33.72545 -32.28047 -30.39896 -27.62320 -27.05644 -26.70718 -25.05935 -23.89277 -23.06417 -22.33214 -21.42396 -20.36207 -19.36467 -19.11501 -18.47265 -18.17945 -17.97973 -17.81144 -17.51070 -17.04245 -16.82649 -16.64686 -16.09436 -15.95948 -15.65148 -15.57872 -15.48473 -14.99965 -14.78746 -14.60182 -14.33285 -13.98271 -13.82424 -13.44235 -13.35163 -13.21522 -13.12201 -12.60574 -12.36368 -12.21509 -12.00972 -11.87792 -11.74603 -11.35225 -11.04173 -10.97951 -10.85563 -10.76971 -10.26034 -10.08295 -8.92110 -5.03686 -0.70674 -0.25823 0.88375 0.93748 1.19919 1.39202 1.61610 1.87960 1.93846 1.98961 2.32264 2.53732 2.93153 3.04502 3.09116 3.30862 3.39543 3.46585 3.59104 3.67571 3.68464 3.77229 3.84799 3.96745 4.11530 4.24228 4.27904 4.41192 4.46272 4.62643 4.64794 4.72797 4.82211 4.85967 4.93385 4.98713 5.03402 5.16974 5.35253 5.52439 5.77114 6.18548 6.29389 6.49695 6.82597 6.94407 7.16627 7.22145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.525 3.475 3 O -0.583 6.583 4 C 0.134 3.866 5 N -0.679 5.679 6 C 0.603 3.397 7 O -0.581 6.581 8 C -0.333 4.333 9 C 0.148 3.852 10 C -0.123 4.123 11 C -0.031 4.031 12 C -0.086 4.086 13 O -0.556 6.556 14 Si 0.804 3.196 15 C -0.153 4.153 16 C 0.112 3.888 17 N -0.274 5.274 18 N -0.335 5.335 19 C 0.138 3.862 20 C -0.136 4.136 21 C 0.095 3.905 22 H 0.096 0.904 23 O -0.559 6.559 24 C -0.132 4.132 25 H 0.412 0.588 26 H 0.405 0.595 27 H 0.421 0.579 28 H 0.149 0.851 29 H 0.087 0.913 30 H 0.409 0.591 31 H -0.269 1.269 32 H -0.305 1.305 33 H 0.183 0.817 34 H 0.208 0.792 35 H 0.242 0.758 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.401 0.599 39 H 0.056 0.944 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 -4.099 0.231 5.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.309 3.691 3 O -0.462 6.462 4 C 0.043 3.957 5 N -0.333 5.333 6 C 0.394 3.606 7 O -0.461 6.461 8 C -0.347 4.347 9 C 0.027 3.973 10 C -0.143 4.143 11 C -0.037 4.037 12 C -0.194 4.194 13 O -0.367 6.367 14 Si 0.706 3.294 15 C -0.174 4.174 16 C -0.013 4.013 17 N -0.038 5.038 18 N -0.155 5.155 19 C -0.043 4.043 20 C -0.174 4.174 21 C 0.036 3.964 22 H 0.114 0.886 23 O -0.367 6.367 24 C -0.171 4.171 25 H 0.243 0.757 26 H 0.236 0.764 27 H 0.260 0.740 28 H 0.167 0.833 29 H 0.105 0.895 30 H 0.261 0.739 31 H -0.195 1.195 32 H -0.233 1.233 33 H 0.200 0.800 34 H 0.224 0.776 35 H 0.258 0.742 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.252 0.748 39 H 0.075 0.925 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.780 -4.359 -0.587 5.799 hybrid contribution 0.157 0.236 1.246 1.278 sum -3.623 -4.123 0.659 5.528 Atomic orbital electron populations 1.43685 1.06536 1.13865 1.75628 1.20911 0.83460 0.90956 0.73771 1.90718 1.69334 1.34506 1.51682 1.21395 0.92339 0.85579 0.96365 1.44975 1.59404 1.24034 1.04919 1.16992 0.76729 0.84970 0.81946 1.90819 1.51197 1.31414 1.72714 1.19590 1.24200 1.00226 0.90716 1.19517 0.95437 0.87425 0.94914 1.20665 1.02584 1.00427 0.90595 1.19857 0.94810 0.95068 0.93930 1.24930 1.05715 0.95798 0.92921 1.86420 1.63900 1.45606 1.40760 0.94185 0.72177 0.81094 0.81904 1.21154 1.01981 0.93088 1.01127 1.22191 0.98576 1.02626 0.77951 1.46291 1.38575 1.11672 1.07250 1.77577 1.30284 1.19153 0.88460 1.24681 0.90076 0.89247 1.00298 1.23900 0.98130 1.03607 0.91773 1.22534 0.97104 0.82902 0.93908 0.88617 1.86501 1.94888 1.15078 1.40258 1.23318 0.93387 1.00019 1.00376 0.75748 0.76377 0.73960 0.83307 0.89452 0.73913 1.19458 1.23320 0.79983 0.77574 0.74215 0.86761 0.85921 0.74783 0.92549 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -0.97 8.83 -173.54 -1.53 -2.51 16 2 C 0.53 4.34 6.60 87.66 0.58 4.92 16 3 O -0.58 -10.36 16.74 -3.00 -0.05 -10.41 16 4 C 0.13 0.35 0.96 3.38 0.00 0.35 16 5 N -0.68 0.05 4.06 -427.92 -1.74 -1.69 16 6 C 0.60 5.08 7.26 86.42 0.63 5.71 16 7 O -0.58 -10.02 14.41 -4.43 -0.06 -10.08 16 8 C -0.33 -2.37 6.17 -19.90 -0.12 -2.49 16 9 C 0.15 1.45 6.76 39.49 0.27 1.72 16 10 C -0.12 -1.13 9.35 22.30 0.21 -0.92 16 11 C -0.03 -0.14 4.53 -19.82 -0.09 -0.23 16 12 C -0.09 0.09 2.81 71.24 0.20 0.29 16 13 O -0.56 1.17 12.76 -148.98 -1.90 -0.73 16 14 Si 0.80 -3.28 31.95 68.60 2.19 -1.09 16 15 C -0.15 -0.23 8.67 22.03 0.19 -0.03 16 16 C 0.11 0.21 11.17 83.31 0.93 1.14 16 17 N -0.27 -1.95 3.86 -187.28 -0.72 -2.68 16 18 N -0.33 -2.03 12.57 -56.62 -0.71 -2.75 16 19 C 0.14 0.18 11.44 85.42 0.98 1.16 16 20 C -0.14 0.76 7.20 31.12 0.22 0.99 16 21 C 0.10 -0.24 5.28 31.12 0.16 -0.08 16 22 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 23 O -0.56 1.76 13.09 -148.98 -1.95 -0.19 16 24 C -0.13 -0.90 6.66 31.12 0.21 -0.69 16 25 H 0.41 -1.78 8.33 -92.71 -0.77 -2.55 16 26 H 0.41 0.02 8.93 -92.71 -0.83 -0.81 16 27 H 0.42 -3.34 7.61 -92.71 -0.71 -4.04 16 28 H 0.15 1.67 7.01 -2.91 -0.02 1.65 16 29 H 0.09 -0.20 7.71 -2.39 -0.02 -0.22 16 30 H 0.41 -5.14 8.74 -74.06 -0.65 -5.79 16 31 H -0.27 0.17 7.06 99.48 0.70 0.87 16 32 H -0.31 -1.28 7.11 99.48 0.71 -0.58 16 33 H 0.18 -0.61 7.50 -2.91 -0.02 -0.63 16 34 H 0.21 -1.07 8.06 -2.91 -0.02 -1.09 16 35 H 0.24 -2.31 7.47 -2.91 -0.02 -2.34 16 36 H 0.11 -0.65 8.10 -2.39 -0.02 -0.67 16 37 H 0.12 -1.48 8.10 -2.38 -0.02 -1.50 16 38 H 0.40 -5.06 9.12 -74.05 -0.68 -5.73 16 39 H 0.06 0.75 7.39 -2.39 -0.02 0.74 16 40 H 0.10 0.95 7.34 -2.39 -0.02 0.93 16 Total: 0.00 -38.06 346.85 -4.53 -42.59 By element: Atomic # 1 Polarization: -19.88 SS G_CDS: -2.42 Total: -22.30 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 4.37 Total: 11.83 kcal Atomic # 7 Polarization: -4.91 SS G_CDS: -4.71 Total: -9.62 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -3.96 Total: -21.41 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: 2.19 Total: -1.09 kcal Total: -38.06 -4.53 -42.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_11618758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.137 kcal (2) G-P(sol) polarization free energy of solvation -38.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds